Wall clock time and date at job start Mon Mar 30 2020 03:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86801 * 120.00076 * 2 1 4 4 H 1.48493 * 109.47079 * 239.99791 * 3 2 1 5 5 H 1.48508 * 109.46903 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47336 * 119.99494 * 3 2 1 7 7 C 1.38755 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00068 * 180.02562 * 7 2 1 9 9 O 1.34922 * 120.00272 * 0.02562 * 7 2 1 10 10 C 1.34310 * 117.00349 * 179.97438 * 9 7 2 11 11 O 1.21213 * 119.99644 * 0.02562 * 10 9 7 12 12 C 1.50693 * 119.99805 * 180.27868 * 10 9 7 13 13 H 1.08999 * 110.71385 * 31.60302 * 12 10 9 14 14 C 1.51429 * 110.79411 * 155.15102 * 12 10 9 15 15 C 1.28884 * 117.49929 * 134.54221 * 14 12 10 16 16 C 1.51422 * 117.49568 * 0.02562 * 15 14 12 17 17 Cl 1.80306 * 110.79293 * 225.44580 * 16 15 14 18 18 S 1.83826 * 102.54432 * 343.71204 * 16 15 14 19 19 H 0.97002 * 120.00099 * 0.02562 * 1 2 3 20 20 H 1.07998 * 121.24947 * 314.56836 * 14 12 10 21 21 H 1.07997 * 121.24996 * 179.97438 * 15 14 12 22 22 H 1.09004 * 110.79486 * 101.97616 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.1022 1.6964 -1.2124 5 1 1.2834 2.7465 -0.0006 6 1 3.1021 1.6965 1.2125 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2016 0.0010 9 8 1.3337 -2.3701 0.0005 10 6 2.0652 -3.4966 0.0005 11 8 3.2756 -3.4330 0.0010 12 6 1.3810 -4.8392 -0.0058 13 1 0.4345 -4.7871 -0.5438 14 6 2.2839 -5.8999 -0.5998 15 6 2.3698 -7.0251 0.0228 16 6 1.5596 -7.1854 1.2919 17 17 2.5570 -7.9263 2.5986 18 16 1.1231 -5.4491 1.7090 19 1 -0.4850 0.8401 -0.0004 20 1 2.8355 -5.7200 -1.5108 21 1 2.9954 -7.8238 -0.3473 22 1 0.6625 -7.7761 1.1063 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725563625.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:08 Heat of formation + Delta-G solvation = -81.574199 kcal Electronic energy + Delta-G solvation = -11997.880198 eV Core-core repulsion = 9477.417134 eV Total energy + Delta-G solvation = -2520.463064 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 233.990 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.17690 -38.31045 -37.32363 -36.54941 -34.37808 -30.99411 -27.83289 -26.83812 -22.81349 -20.21829 -19.96564 -19.11083 -18.24799 -16.92122 -16.55326 -16.44800 -16.12097 -15.85234 -14.50581 -14.38700 -14.23365 -13.65669 -13.20640 -13.09550 -12.44444 -12.18394 -12.14382 -12.05668 -11.73304 -11.55296 -11.32470 -10.74845 -10.52934 -9.16440 -8.59359 -6.39601 -0.11130 0.36527 0.70646 1.22817 1.34170 1.39685 1.49989 1.76853 2.06013 2.56950 2.93249 3.02196 3.45406 3.90302 3.98878 4.47559 4.61195 5.04625 5.10604 5.19336 5.75300 6.52096 6.84275 7.63107 8.60351 Molecular weight = 233.99amu Principal moments of inertia in cm(-1) A = 0.057131 B = 0.006144 C = 0.006074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.983808 B = 4556.074545 C = 4608.985130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C -0.002 4.002 3 Si 1.020 2.980 4 H -0.258 1.258 5 H -0.259 1.259 6 H -0.263 1.263 7 C -0.421 4.421 8 H 0.085 0.915 9 O -0.235 6.235 10 C 0.411 3.589 11 O -0.562 6.562 12 C -0.007 4.007 13 H 0.153 0.847 14 C -0.118 4.118 15 C -0.148 4.148 16 C 0.070 3.930 17 Cl -0.134 7.134 18 S -0.248 6.248 19 H 0.281 0.719 20 H 0.162 0.838 21 H 0.190 0.810 22 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.197 -13.771 -0.785 13.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.204 4.204 3 Si 0.838 3.162 4 H -0.182 1.182 5 H -0.182 1.182 6 H -0.188 1.188 7 C -0.497 4.497 8 H 0.103 0.897 9 O -0.143 6.143 10 C 0.256 3.744 11 O -0.460 6.460 12 C -0.136 4.136 13 H 0.170 0.830 14 C -0.138 4.138 15 C -0.167 4.167 16 C -0.084 4.084 17 Cl -0.107 7.107 18 S -0.021 6.021 19 H 0.090 0.910 20 H 0.180 0.820 21 H 0.207 0.793 22 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 1.010 -13.123 0.404 13.168 hybrid contribution 0.609 0.352 -0.815 1.076 sum 1.619 -12.770 -0.411 12.879 Atomic orbital electron populations 1.70067 1.07708 1.29725 1.45928 1.26608 0.96931 1.02439 0.94374 0.84657 0.77619 0.74034 0.79885 1.18201 1.18227 1.18784 1.21450 0.92306 0.80786 1.55175 0.89719 1.83878 1.40276 1.14151 1.75949 1.23081 0.86431 0.87005 0.77881 1.90541 1.16287 1.88121 1.51002 1.22669 1.03622 0.91470 0.95847 0.82962 1.22520 0.97056 0.91550 1.02650 1.22991 1.00103 0.99985 0.93639 1.25948 0.99141 0.93963 0.89357 1.98760 1.73914 1.83553 1.54510 1.88872 1.89101 1.09091 1.15048 0.90957 0.82032 0.79271 0.80189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.95 13.67 21.62 0.30 -52.65 14 2 C 0.00 -0.13 5.49 84.87 0.47 0.33 14 3 Si 1.02 43.20 29.55 68.60 2.03 45.22 14 4 H -0.26 -10.39 7.11 99.48 0.71 -9.68 14 5 H -0.26 -10.05 7.11 99.48 0.71 -9.34 14 6 H -0.26 -10.85 7.11 99.48 0.71 -10.14 14 7 C -0.42 -25.62 9.65 67.94 0.66 -24.96 14 8 H 0.09 5.19 6.86 -2.91 -0.02 5.17 14 9 O -0.23 -13.91 9.75 14.85 0.14 -13.76 14 10 C 0.41 20.69 7.17 71.23 0.51 21.20 14 11 O -0.56 -30.69 15.58 20.77 0.32 -30.37 14 12 C -0.01 -0.27 3.87 29.33 0.11 -0.16 14 13 H 0.15 4.93 8.14 -2.39 -0.02 4.91 14 14 C -0.12 -3.22 9.04 27.99 0.25 -2.97 14 15 C -0.15 -3.12 9.74 27.99 0.27 -2.84 14 16 C 0.07 1.57 4.50 71.47 0.32 1.89 14 17 Cl -0.13 -3.19 28.80 -2.72 -0.08 -3.27 14 18 S -0.25 -8.57 22.58 -56.49 -1.28 -9.85 14 19 H 0.28 15.01 8.31 -92.71 -0.77 14.24 14 20 H 0.16 4.04 8.06 -2.91 -0.02 4.02 14 21 H 0.19 2.62 8.06 -2.91 -0.02 2.59 14 22 H 0.18 2.77 8.14 -2.38 -0.02 2.75 14 Total: -1.00 -72.95 238.26 5.27 -67.67 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: 1.24 Total: 4.51 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: 2.59 Total: -7.51 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 0.30 Total: -52.65 kcal Atomic # 8 Polarization: -44.60 SS G_CDS: 0.47 Total: -44.13 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.28 Total: -9.85 kcal Atomic # 17 Polarization: -3.19 SS G_CDS: -0.08 Total: -3.27 kcal Total: -72.95 5.27 -67.67 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725563625.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.901 kcal (2) G-P(sol) polarization free energy of solvation -72.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds