Wall clock time and date at job start Mon Mar 30 2020 03:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86805 * 119.99735 * 2 1 4 4 H 1.48497 * 109.47322 * 179.72977 * 3 2 1 5 5 H 1.48506 * 109.47056 * 299.72720 * 3 2 1 6 6 H 1.48501 * 109.47099 * 59.72749 * 3 2 1 7 7 C 1.38755 * 120.00431 * 179.72999 * 2 1 3 8 8 H 1.08000 * 119.99611 * 179.97438 * 7 2 1 9 9 O 1.34916 * 119.99909 * 359.97438 * 7 2 1 10 10 C 1.34313 * 116.99956 * 180.02562 * 9 7 2 11 11 O 1.21211 * 119.99871 * 0.02562 * 10 9 7 12 12 C 1.50693 * 119.99793 * 180.02562 * 10 9 7 13 13 H 1.08992 * 110.71064 * 333.12229 * 12 10 9 14 14 C 1.51427 * 110.79611 * 209.57268 * 12 10 9 15 15 C 1.28873 * 117.50174 * 258.02573 * 14 12 10 16 16 C 1.51425 * 117.49900 * 0.02562 * 15 14 12 17 17 Cl 1.80304 * 110.79797 * 101.97404 * 16 15 14 18 18 S 1.83834 * 102.54078 * 343.71322 * 16 15 14 19 19 H 0.97000 * 120.00093 * 0.26909 * 1 2 3 20 20 H 1.07998 * 121.24724 * 77.99834 * 14 12 10 21 21 H 1.07996 * 121.25361 * 179.97438 * 15 14 12 22 22 H 1.09007 * 110.79549 * 225.45030 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.7083 1.3466 0.0066 5 1 1.8946 2.3936 -1.2159 6 1 1.8846 2.3994 1.2092 7 6 2.0083 -1.2016 0.0057 8 1 3.0883 -1.2014 0.0052 9 8 1.3338 -2.3700 0.0117 10 6 2.0654 -3.4964 0.0175 11 8 3.2758 -3.4329 0.0176 12 6 1.3813 -4.8391 0.0238 13 1 0.3959 -4.7675 0.4840 14 6 2.2340 -5.8736 0.7279 15 6 2.8953 -6.7000 -0.0073 16 6 2.7607 -6.5618 -1.5092 17 17 4.2013 -5.7324 -2.2075 18 16 1.2586 -5.5159 -1.6808 19 1 -0.4850 0.8400 -0.0039 20 1 2.2863 -5.9170 1.8057 21 1 3.5226 -7.4619 0.4312 22 1 2.6096 -7.5355 -1.9755 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725563626.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:10 Heat of formation + Delta-G solvation = -59.426828 kcal Electronic energy + Delta-G solvation = -12239.531781 eV Core-core repulsion = 9720.029099 eV Total energy + Delta-G solvation = -2519.502682 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 233.990 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.14572 -36.88031 -35.51465 -34.70523 -32.18490 -29.48991 -26.27926 -24.99171 -20.92286 -18.90207 -17.78619 -17.27234 -16.78412 -15.35378 -14.99472 -14.45277 -14.36662 -14.19120 -13.06883 -12.59894 -12.35064 -12.06221 -11.60752 -11.31669 -10.87785 -10.41549 -10.37968 -10.25148 -9.92301 -9.88418 -9.64976 -9.10502 -8.60540 -7.71836 -6.44332 -4.10371 1.43913 1.59756 1.88241 2.69078 3.12048 3.18973 3.26590 3.67423 3.89985 4.25504 4.48998 4.69868 4.84796 5.12964 5.34740 5.56269 6.06062 6.39460 6.61842 7.37019 7.91479 8.66174 9.04000 9.79227 10.73224 Molecular weight = 233.99amu Principal moments of inertia in cm(-1) A = 0.040958 B = 0.007754 C = 0.007279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.459809 B = 3609.975335 C = 3845.948290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.042 3.958 3 Si 0.944 3.056 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.375 4.375 8 H 0.098 0.902 9 O -0.205 6.205 10 C 0.408 3.592 11 O -0.529 6.529 12 C -0.016 4.016 13 H 0.141 0.859 14 C -0.098 4.098 15 C -0.165 4.165 16 C 0.052 3.948 17 Cl -0.137 7.137 18 S -0.192 6.192 19 H 0.270 0.730 20 H 0.149 0.851 21 H 0.149 0.851 22 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.511 -12.259 -0.002 12.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.162 4.162 3 Si 0.768 3.232 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.452 4.452 8 H 0.116 0.884 9 O -0.112 6.112 10 C 0.251 3.749 11 O -0.425 6.425 12 C -0.145 4.145 13 H 0.159 0.841 14 C -0.118 4.118 15 C -0.184 4.184 16 C -0.103 4.103 17 Cl -0.111 7.111 18 S 0.035 5.965 19 H 0.080 0.920 20 H 0.167 0.833 21 H 0.166 0.834 22 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.930 -11.849 -1.014 12.048 hybrid contribution 1.198 0.669 0.852 1.615 sum 3.129 -11.180 -0.162 11.611 Atomic orbital electron populations 1.70002 1.06030 1.27721 1.46055 1.25361 0.95841 0.98896 0.96136 0.85601 0.79516 0.79922 0.78158 1.18868 1.20083 1.20128 1.21323 0.92487 0.79496 1.51880 0.88415 1.83846 1.39247 1.13146 1.75000 1.22060 0.86513 0.85918 0.80369 1.90613 1.14638 1.87308 1.49952 1.22621 1.03753 0.93904 0.94232 0.84099 1.22487 0.95975 0.92065 1.01261 1.22598 1.01669 1.02440 0.91667 1.25576 0.89118 0.98956 0.96633 1.98792 1.45737 1.80909 1.85652 1.88278 1.30972 1.55694 1.21518 0.92021 0.83340 0.83385 0.84120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.21 13.67 55.48 0.76 -24.45 14 2 C 0.04 1.19 5.49 -17.53 -0.10 1.09 14 3 Si 0.94 21.38 29.55 -169.99 -5.02 16.36 14 4 H -0.26 -5.93 7.11 56.52 0.40 -5.53 14 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 14 6 H -0.28 -6.01 7.11 56.52 0.40 -5.60 14 7 C -0.38 -11.10 9.64 30.92 0.30 -10.80 14 8 H 0.10 2.92 6.86 -52.49 -0.36 2.56 14 9 O -0.21 -5.89 9.75 -20.70 -0.20 -6.09 14 10 C 0.41 10.01 7.11 36.00 0.26 10.27 14 11 O -0.53 -13.93 15.66 -19.05 -0.30 -14.23 14 12 C -0.02 -0.29 3.87 -28.68 -0.11 -0.41 14 13 H 0.14 2.34 8.14 -51.93 -0.42 1.92 14 14 C -0.10 -1.43 9.10 -35.10 -0.32 -1.75 14 15 C -0.16 -2.14 9.74 -35.10 -0.34 -2.49 14 16 C 0.05 0.74 4.50 36.36 0.16 0.90 14 17 Cl -0.14 -2.34 28.80 -51.86 -1.49 -3.83 14 18 S -0.19 -3.34 22.58 -107.50 -2.43 -5.77 14 19 H 0.27 7.21 8.31 -40.82 -0.34 6.87 14 20 H 0.15 1.77 8.06 -52.49 -0.42 1.35 14 21 H 0.15 1.44 8.06 -52.49 -0.42 1.01 14 22 H 0.14 1.51 8.14 -51.93 -0.42 1.08 14 LS Contribution 238.34 15.07 3.59 3.59 Total: -1.00 -33.16 238.34 -6.43 -39.59 By element: Atomic # 1 Polarization: -0.81 SS G_CDS: -1.19 Total: -1.99 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -0.15 Total: -3.18 kcal Atomic # 7 Polarization: -25.21 SS G_CDS: 0.76 Total: -24.45 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.50 Total: -20.32 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -3.34 SS G_CDS: -2.43 Total: -5.77 kcal Atomic # 17 Polarization: -2.34 SS G_CDS: -1.49 Total: -3.83 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -33.16 -6.43 -39.59 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725563626.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.835 kcal (2) G-P(sol) polarization free energy of solvation -33.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds