Wall clock time and date at job start Mon Mar 30 2020 03:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86805 * 119.99735 * 2 1 4 4 H 1.48497 * 109.47322 * 179.72977 * 3 2 1 5 5 H 1.48506 * 109.47056 * 299.72720 * 3 2 1 6 6 H 1.48501 * 109.47099 * 59.72749 * 3 2 1 7 7 C 1.38755 * 120.00431 * 179.72999 * 2 1 3 8 8 H 1.08000 * 119.99611 * 179.97438 * 7 2 1 9 9 O 1.34916 * 119.99909 * 359.97438 * 7 2 1 10 10 C 1.34313 * 116.99956 * 180.02562 * 9 7 2 11 11 O 1.21211 * 119.99871 * 0.02562 * 10 9 7 12 12 C 1.50693 * 119.99793 * 180.02562 * 10 9 7 13 13 H 1.08992 * 110.71064 * 333.12229 * 12 10 9 14 14 C 1.51427 * 110.79611 * 209.57268 * 12 10 9 15 15 C 1.28873 * 117.50174 * 258.02573 * 14 12 10 16 16 C 1.51425 * 117.49900 * 0.02562 * 15 14 12 17 17 Cl 1.80304 * 110.79797 * 101.97404 * 16 15 14 18 18 S 1.83834 * 102.54078 * 343.71322 * 16 15 14 19 19 H 0.97000 * 120.00093 * 0.26909 * 1 2 3 20 20 H 1.07998 * 121.24724 * 77.99834 * 14 12 10 21 21 H 1.07996 * 121.25361 * 179.97438 * 15 14 12 22 22 H 1.09007 * 110.79549 * 225.45030 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.7083 1.3466 0.0066 5 1 1.8946 2.3936 -1.2159 6 1 1.8846 2.3994 1.2092 7 6 2.0083 -1.2016 0.0057 8 1 3.0883 -1.2014 0.0052 9 8 1.3338 -2.3700 0.0117 10 6 2.0654 -3.4964 0.0175 11 8 3.2758 -3.4329 0.0176 12 6 1.3813 -4.8391 0.0238 13 1 0.3959 -4.7675 0.4840 14 6 2.2340 -5.8736 0.7279 15 6 2.8953 -6.7000 -0.0073 16 6 2.7607 -6.5618 -1.5092 17 17 4.2013 -5.7324 -2.2075 18 16 1.2586 -5.5159 -1.6808 19 1 -0.4850 0.8400 -0.0039 20 1 2.2863 -5.9170 1.8057 21 1 3.5226 -7.4619 0.4312 22 1 2.6096 -7.5355 -1.9755 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725563626.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:09 Heat of formation + Delta-G solvation = -80.451213 kcal Electronic energy + Delta-G solvation = -12240.443466 eV Core-core repulsion = 9720.029099 eV Total energy + Delta-G solvation = -2520.414368 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 233.990 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.10488 -38.28422 -37.12138 -36.30822 -34.32740 -30.93377 -27.83824 -26.78423 -22.70573 -20.16087 -19.90748 -18.86205 -18.46568 -16.81695 -16.63975 -16.29157 -16.16554 -15.71901 -14.48862 -14.20585 -13.85635 -13.65961 -13.22196 -13.11349 -12.48296 -12.18951 -12.08558 -12.01402 -11.56222 -11.33469 -11.20277 -10.71513 -10.59875 -9.15654 -8.55804 -6.34777 0.07408 0.38367 0.56670 1.32579 1.35315 1.48946 1.55433 1.82404 2.11445 2.68224 2.96644 3.09955 3.53744 3.85566 3.99594 4.56748 4.60277 5.07721 5.15989 5.30505 5.80547 6.61128 6.88855 7.71419 8.64631 Molecular weight = 233.99amu Principal moments of inertia in cm(-1) A = 0.040958 B = 0.007754 C = 0.007279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.459809 B = 3609.975335 C = 3845.948290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.004 4.004 3 Si 1.016 2.984 4 H -0.265 1.265 5 H -0.262 1.262 6 H -0.257 1.257 7 C -0.414 4.414 8 H 0.083 0.917 9 O -0.240 6.240 10 C 0.409 3.591 11 O -0.549 6.549 12 C -0.015 4.015 13 H 0.152 0.848 14 C -0.118 4.118 15 C -0.145 4.145 16 C 0.058 3.942 17 Cl -0.162 7.162 18 S -0.224 6.224 19 H 0.279 0.721 20 H 0.177 0.823 21 H 0.194 0.806 22 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.273 -13.336 0.375 13.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.204 4.204 3 Si 0.835 3.165 4 H -0.189 1.189 5 H -0.186 1.186 6 H -0.182 1.182 7 C -0.490 4.490 8 H 0.101 0.899 9 O -0.149 6.149 10 C 0.253 3.747 11 O -0.445 6.445 12 C -0.144 4.144 13 H 0.170 0.830 14 C -0.137 4.137 15 C -0.163 4.163 16 C -0.096 4.096 17 Cl -0.136 7.136 18 S 0.003 5.997 19 H 0.088 0.912 20 H 0.195 0.805 21 H 0.211 0.789 22 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 2.683 -12.948 -0.641 13.239 hybrid contribution 0.986 0.819 0.686 1.454 sum 3.669 -12.130 0.046 12.673 Atomic orbital electron populations 1.70080 1.07635 1.29346 1.46799 1.26531 0.96877 1.02295 0.94708 0.84586 0.77809 0.74809 0.79273 1.18867 1.18623 1.18166 1.21454 0.92143 0.80856 1.54542 0.89929 1.83874 1.40323 1.14112 1.76544 1.23288 0.86648 0.87050 0.77714 1.90575 1.15821 1.87998 1.50117 1.22731 1.04692 0.91315 0.95677 0.83012 1.22681 0.96668 0.91587 1.02758 1.23026 1.00482 1.02423 0.90406 1.26114 0.86154 0.99170 0.98153 1.98798 1.46962 1.81691 1.86116 1.88393 1.33405 1.56506 1.21369 0.91165 0.80537 0.78884 0.79732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.69 13.67 21.62 0.30 -53.39 14 2 C 0.00 -0.21 5.49 84.87 0.47 0.25 14 3 Si 1.02 43.95 29.55 68.60 2.03 45.98 14 4 H -0.26 -11.29 7.11 99.48 0.71 -10.59 14 5 H -0.26 -10.66 7.11 99.48 0.71 -9.96 14 6 H -0.26 -10.30 7.11 99.48 0.71 -9.59 14 7 C -0.41 -25.31 9.64 67.94 0.66 -24.66 14 8 H 0.08 5.13 6.86 -2.91 -0.02 5.11 14 9 O -0.24 -14.26 9.75 14.89 0.15 -14.11 14 10 C 0.41 20.38 7.11 71.23 0.51 20.89 14 11 O -0.55 -29.24 15.66 20.77 0.33 -28.91 14 12 C -0.02 -0.55 3.87 29.33 0.11 -0.43 14 13 H 0.15 5.03 8.14 -2.39 -0.02 5.01 14 14 C -0.12 -3.11 9.10 28.00 0.25 -2.86 14 15 C -0.14 -3.20 9.74 28.00 0.27 -2.93 14 16 C 0.06 1.48 4.50 71.47 0.32 1.80 14 17 Cl -0.16 -5.24 28.80 -2.72 -0.08 -5.32 14 18 S -0.22 -7.57 22.58 -56.49 -1.28 -8.85 14 19 H 0.28 15.02 8.31 -92.71 -0.77 14.25 14 20 H 0.18 3.63 8.06 -2.91 -0.02 3.61 14 21 H 0.19 2.62 8.06 -2.91 -0.02 2.60 14 22 H 0.19 3.13 8.14 -2.38 -0.02 3.11 14 Total: -1.00 -74.26 238.34 5.27 -68.98 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: 1.24 Total: 3.55 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: 2.59 Total: -7.93 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.30 Total: -53.39 kcal Atomic # 8 Polarization: -43.49 SS G_CDS: 0.47 Total: -43.02 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -7.57 SS G_CDS: -1.28 Total: -8.85 kcal Atomic # 17 Polarization: -5.24 SS G_CDS: -0.08 Total: -5.32 kcal Total: -74.26 5.27 -68.98 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725563626.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.467 kcal (2) G-P(sol) polarization free energy of solvation -74.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds