Wall clock time and date at job start Mon Mar 30 2020 03:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86803 * 120.00307 * 2 1 4 4 H 1.48500 * 109.46810 * 270.00315 * 3 2 1 5 5 H 1.48498 * 109.46707 * 30.00196 * 3 2 1 6 6 H 1.48494 * 109.47090 * 150.00043 * 3 2 1 7 7 C 1.38836 * 119.99608 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99493 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00170 * 359.97438 * 7 2 1 10 10 C 1.34809 * 117.00102 * 179.97438 * 9 7 2 11 11 O 1.21575 * 119.99794 * 0.02562 * 10 9 7 12 12 C 1.46871 * 120.00380 * 180.02562 * 10 9 7 13 13 C 1.31115 * 121.44317 * 180.02562 * 12 10 9 14 14 C 1.51375 * 117.12137 * 179.97438 * 13 12 10 15 15 Cl 1.80299 * 110.76105 * 225.05642 * 14 13 12 16 16 S 1.83769 * 102.88951 * 343.45872 * 14 13 12 17 17 C 1.51381 * 121.43795 * 0.02562 * 12 10 9 18 18 H 0.97000 * 119.99867 * 359.97438 * 1 2 3 19 19 H 1.08003 * 121.43944 * 359.97438 * 13 12 10 20 20 H 1.09002 * 110.76065 * 101.86023 * 14 13 12 21 21 H 1.09002 * 110.76020 * 314.78459 * 17 12 10 22 22 H 1.09003 * 110.75813 * 77.97902 * 17 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5456 1.4401 0.7000 7 6 2.0081 -1.2024 -0.0005 8 1 3.0881 -1.2024 -0.0010 9 8 1.3339 -2.3700 -0.0005 10 6 2.0681 -3.5007 -0.0016 11 8 3.2822 -3.4371 -0.0021 12 6 1.4013 -4.8093 -0.0022 13 6 2.0875 -5.9266 -0.0028 14 6 1.3006 -7.2197 -0.0028 15 17 1.9862 -8.3851 1.1899 16 16 -0.3793 -6.6774 0.5080 17 6 -0.1079 -4.9265 -0.0023 18 1 -0.4850 0.8401 0.0004 19 1 3.1675 -5.9244 -0.0032 20 1 1.2783 -7.6584 -1.0004 21 1 -0.5487 -4.2409 0.7214 22 1 -0.5095 -4.7442 -0.9991 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725563939.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:54 Heat of formation + Delta-G solvation = -85.988497 kcal Electronic energy + Delta-G solvation = -12001.359291 eV Core-core repulsion = 9480.704809 eV Total energy + Delta-G solvation = -2520.654482 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 233.990 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.24480 -38.31809 -37.31888 -36.54974 -34.38345 -30.46966 -27.97142 -27.01517 -23.79552 -20.21835 -19.94774 -18.86456 -17.88119 -17.02438 -16.71913 -16.28429 -16.11948 -15.32408 -14.80580 -14.62158 -13.93574 -13.68123 -13.40356 -13.27248 -12.48096 -12.29590 -12.15876 -12.07131 -11.86924 -11.64899 -11.22338 -10.76197 -10.58874 -9.05205 -8.61775 -6.38507 -0.32705 0.25044 0.67387 0.97126 1.34978 1.40343 1.52246 1.95646 2.05108 2.49492 2.94870 3.18674 3.40566 3.82491 4.19353 4.31616 4.51414 4.69523 5.04923 5.16684 5.73314 6.49019 6.82551 7.60299 8.57704 Molecular weight = 233.99amu Principal moments of inertia in cm(-1) A = 0.055929 B = 0.006132 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.518281 B = 4564.895235 C = 4967.798670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.001 3.999 3 Si 1.019 2.981 4 H -0.259 1.259 5 H -0.260 1.260 6 H -0.264 1.264 7 C -0.420 4.420 8 H 0.086 0.914 9 O -0.223 6.223 10 C 0.436 3.564 11 O -0.574 6.574 12 C -0.122 4.122 13 C -0.091 4.091 14 C 0.071 3.929 15 Cl -0.124 7.124 16 S -0.228 6.228 17 C -0.028 4.028 18 H 0.282 0.718 19 H 0.162 0.838 20 H 0.184 0.816 21 H 0.112 0.888 22 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.299 -11.213 -1.249 11.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.201 4.201 3 Si 0.837 3.163 4 H -0.183 1.183 5 H -0.184 1.184 6 H -0.188 1.188 7 C -0.495 4.495 8 H 0.103 0.897 9 O -0.130 6.130 10 C 0.284 3.716 11 O -0.474 6.474 12 C -0.125 4.125 13 C -0.111 4.111 14 C -0.083 4.083 15 Cl -0.097 7.097 16 S -0.001 6.001 17 C -0.175 4.175 18 H 0.092 0.908 19 H 0.179 0.821 20 H 0.201 0.799 21 H 0.130 0.870 22 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.157 -11.755 -0.641 11.829 hybrid contribution 1.369 1.330 -0.337 1.938 sum 0.211 -10.425 -0.978 10.473 Atomic orbital electron populations 1.70033 1.07625 1.29804 1.45184 1.26575 0.96911 1.02294 0.94338 0.84601 0.77710 0.74312 0.79638 1.18304 1.18361 1.18792 1.21519 0.92421 0.80802 1.54763 0.89670 1.83928 1.39741 1.13914 1.75401 1.21084 0.85711 0.86105 0.78712 1.90646 1.16089 1.88267 1.52435 1.20527 0.95844 0.90713 1.05430 1.23474 1.02294 0.90486 0.94855 1.25587 0.91870 0.92143 0.98691 1.98768 1.86292 1.62194 1.62487 1.88257 1.17766 1.09343 1.84777 1.23171 0.92623 0.94506 1.07216 0.90830 0.82077 0.79936 0.87000 0.85151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.22 13.67 21.64 0.30 -49.92 14 2 C 0.00 0.05 5.50 84.90 0.47 0.51 14 3 Si 1.02 41.61 29.55 68.60 2.03 43.64 14 4 H -0.26 -9.97 7.11 99.48 0.71 -9.26 14 5 H -0.26 -9.82 7.11 99.48 0.71 -9.11 14 6 H -0.26 -10.61 7.11 99.48 0.71 -9.90 14 7 C -0.42 -24.57 9.65 67.96 0.66 -23.92 14 8 H 0.09 5.07 6.86 -2.91 -0.02 5.05 14 9 O -0.22 -12.58 9.40 10.79 0.10 -12.48 14 10 C 0.44 21.47 7.84 70.08 0.55 22.01 14 11 O -0.57 -30.83 15.62 19.59 0.31 -30.52 14 12 C -0.12 -4.43 5.88 -17.54 -0.10 -4.54 14 13 C -0.09 -2.68 9.33 25.75 0.24 -2.44 14 14 C 0.07 1.62 4.47 71.45 0.32 1.94 14 15 Cl -0.12 -2.87 28.79 -2.72 -0.08 -2.95 14 16 S -0.23 -6.04 23.15 -56.49 -1.31 -7.34 14 17 C -0.03 -0.87 7.01 71.45 0.50 -0.37 14 18 H 0.28 14.39 8.31 -92.71 -0.77 13.62 14 19 H 0.16 4.81 7.65 -2.91 -0.02 4.78 14 20 H 0.18 2.94 8.14 -2.39 -0.02 2.92 14 21 H 0.11 3.88 8.14 -2.39 -0.02 3.86 14 22 H 0.13 3.71 8.14 -2.39 -0.02 3.69 14 Total: -1.00 -65.96 238.42 5.22 -60.74 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: 1.25 Total: 5.64 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: 2.63 Total: -6.80 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: 0.30 Total: -49.92 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: 0.41 Total: -43.00 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Atomic # 16 Polarization: -6.04 SS G_CDS: -1.31 Total: -7.34 kcal Atomic # 17 Polarization: -2.87 SS G_CDS: -0.08 Total: -2.95 kcal Total: -65.96 5.22 -60.74 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725563939.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.248 kcal (2) G-P(sol) polarization free energy of solvation -65.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds