Wall clock time and date at job start Mon Mar 30 2020 03:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46893 * 111.00644 * 2 1 4 4 C 1.50706 * 109.47176 * 66.04281 * 3 2 1 5 5 H 1.07999 * 119.99515 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00176 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99883 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00043 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47216 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47389 * 119.99848 * 8 6 4 11 11 H 1.48501 * 109.47057 * 239.99829 * 8 6 4 12 12 C 1.46902 * 110.99945 * 236.04460 * 2 1 3 13 13 H 1.08995 * 110.76007 * 186.00570 * 12 2 1 14 14 N 1.47310 * 110.85824 * 309.72580 * 12 2 1 15 15 C 1.38025 * 114.48942 * 118.17308 * 14 12 2 16 16 C 1.31682 * 121.13199 * 0.02562 * 15 14 12 17 17 Cl 1.73596 * 126.86758 * 179.97438 * 16 15 14 18 18 S 1.77674 * 106.26594 * 359.97438 * 16 15 14 19 19 H 1.08997 * 109.47186 * 59.99756 * 1 2 3 20 20 H 1.08993 * 109.47654 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47132 * 300.00059 * 1 2 3 22 22 H 1.09001 * 109.46739 * 306.04690 * 3 2 1 23 23 H 1.09000 * 109.47767 * 186.04949 * 3 2 1 24 24 H 0.97004 * 119.99507 * 180.02562 * 7 6 4 25 25 H 0.96999 * 122.75620 * 298.14629 * 14 12 2 26 26 H 1.08000 * 119.43269 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0746 1.5112 2.0487 6 6 2.0269 3.3494 1.5285 7 7 2.7114 4.0020 0.6145 8 14 1.5832 4.1867 3.1382 9 1 0.8158 3.2442 3.9914 10 1 2.8251 4.5942 3.8431 11 1 0.7553 5.3877 2.8597 12 6 1.9954 -0.7660 -1.1376 13 1 3.0801 -0.8530 -1.0759 14 7 1.3620 -2.0938 -1.2139 15 6 0.6455 -2.3202 -2.3717 16 6 0.5586 -1.3999 -3.3095 17 17 -0.2965 -1.5247 -4.8151 18 16 1.4914 -0.0050 -2.7258 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.5612 1.9272 -0.8309 23 1 3.0798 1.3443 -0.1083 24 1 2.9860 4.9182 0.7766 25 1 1.4422 -2.7549 -0.5086 26 1 0.1484 -3.2688 -2.5112 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725563971.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:49 Heat of formation + Delta-G solvation = 37.369893 kcal Electronic energy + Delta-G solvation = -12492.765302 eV Core-core repulsion = 10145.585887 eV Total energy + Delta-G solvation = -2347.179416 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 234.029 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.38195 -36.53230 -35.33895 -32.48949 -29.60760 -27.25673 -26.44208 -23.70729 -20.95427 -20.28057 -18.27253 -16.64694 -15.91772 -15.32853 -14.55996 -14.49184 -14.40980 -13.46780 -12.88219 -12.45206 -12.33692 -12.01294 -11.40737 -11.15615 -10.99653 -10.79395 -10.66793 -10.55389 -10.05924 -9.96359 -9.34433 -8.73765 -8.51700 -7.54681 -6.76103 -6.09133 -4.12127 1.59052 2.14186 2.46737 2.59617 3.27786 3.35221 3.38854 3.51683 4.36131 4.76162 5.26956 5.30105 5.46699 5.62734 5.98737 6.34204 6.65855 6.78648 6.96947 7.25586 7.51449 7.63724 7.84518 7.99375 8.31680 8.93547 9.51975 11.01321 Molecular weight = 234.03amu Principal moments of inertia in cm(-1) A = 0.051526 B = 0.006389 C = 0.006131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.284351 B = 4381.796222 C = 4565.951502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.517 5.517 3 C 0.190 3.810 4 C -0.512 4.512 5 H 0.065 0.935 6 C 0.058 3.942 7 N -0.893 5.893 8 Si 0.900 3.100 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.284 1.284 12 C 0.352 3.648 13 H 0.120 0.880 14 N -0.721 5.721 15 C 0.122 3.878 16 C -0.182 4.182 17 Cl -0.021 7.021 18 S -0.196 6.196 19 H 0.038 0.962 20 H 0.046 0.954 21 H 0.078 0.922 22 H 0.017 0.983 23 H 0.032 0.968 24 H 0.263 0.737 25 H 0.418 0.582 26 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.836 -12.356 -5.569 14.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.243 5.243 3 C 0.065 3.935 4 C -0.551 4.551 5 H 0.083 0.917 6 C -0.144 4.144 7 N -0.532 5.532 8 Si 0.728 3.272 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.210 1.210 12 C 0.047 3.953 13 H 0.138 0.862 14 N -0.355 5.355 15 C -0.012 4.012 16 C -0.331 4.331 17 Cl 0.007 6.993 18 S 0.034 5.966 19 H 0.056 0.944 20 H 0.065 0.935 21 H 0.096 0.904 22 H 0.035 0.965 23 H 0.050 0.950 24 H 0.072 0.928 25 H 0.258 0.742 26 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.329 -11.179 -5.725 12.994 hybrid contribution -0.789 -0.521 0.674 1.161 sum -4.118 -11.700 -5.051 13.392 Atomic orbital electron populations 1.22290 0.87449 0.99917 1.02281 1.62405 1.08881 1.19113 1.33869 1.19843 0.95620 0.79963 0.98056 1.21073 1.35583 0.97131 1.01286 0.91731 1.24974 0.95126 0.97223 0.97091 1.69973 1.37839 1.11479 1.33873 0.86409 0.78180 0.79364 0.83279 1.19688 1.20946 1.20989 1.25214 0.98939 0.83422 0.87680 0.86243 1.45069 1.55283 1.15941 1.19182 1.20216 0.95300 0.98921 0.86809 1.22751 1.14962 0.99977 0.95421 1.98298 1.75203 1.97577 1.28193 1.87253 1.62853 1.22816 1.23706 0.94371 0.93505 0.90352 0.96527 0.94997 0.92774 0.74235 0.83085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 8.87 60.06 0.53 1.10 15 2 N -0.52 -10.57 4.93 -243.15 -1.20 -11.77 15 3 C 0.19 4.78 4.28 -4.98 -0.02 4.76 15 4 C -0.51 -13.96 8.51 -34.44 -0.29 -14.25 15 5 H 0.06 1.74 7.10 -52.49 -0.37 1.36 15 6 C 0.06 1.61 5.46 -17.82 -0.10 1.52 15 7 N -0.89 -26.11 13.29 55.43 0.74 -25.37 15 8 Si 0.90 21.24 29.54 -169.99 -5.02 16.21 15 9 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 11 H -0.28 -6.67 7.11 56.52 0.40 -6.26 15 12 C 0.35 6.13 4.26 -62.43 -0.27 5.86 15 13 H 0.12 2.03 8.14 -51.93 -0.42 1.61 15 14 N -0.72 -9.66 4.71 -60.08 -0.28 -9.94 15 15 C 0.12 1.59 11.01 -16.64 -0.18 1.41 15 16 C -0.18 -2.80 7.30 28.86 0.21 -2.59 15 17 Cl -0.02 -0.28 29.31 -51.86 -1.52 -1.80 15 18 S -0.20 -3.67 20.37 -107.50 -2.19 -5.86 15 19 H 0.04 0.78 7.14 -51.93 -0.37 0.41 15 20 H 0.05 0.78 7.18 -51.93 -0.37 0.40 15 21 H 0.08 1.60 6.86 -51.93 -0.36 1.24 15 22 H 0.02 0.46 7.33 -51.93 -0.38 0.08 15 23 H 0.03 0.85 8.08 -51.93 -0.42 0.44 15 24 H 0.26 7.25 8.31 -40.82 -0.34 6.91 15 25 H 0.42 4.53 8.96 -40.82 -0.37 4.16 15 26 H 0.15 1.47 8.06 -52.49 -0.42 1.04 15 LS Contribution 250.32 15.07 3.77 3.77 Total: -1.00 -29.24 250.32 -8.44 -37.68 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -2.62 Total: -0.73 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -0.12 Total: -2.19 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: -0.74 Total: -47.08 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -2.19 Total: -5.86 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.52 Total: -1.80 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -29.24 -8.44 -37.68 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725563971.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.053 kcal (2) G-P(sol) polarization free energy of solvation -29.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds