Wall clock time and date at job start Mon Mar 30 2020 03:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46893 * 111.00644 * 2 1 4 4 C 1.50706 * 109.47176 * 66.04281 * 3 2 1 5 5 H 1.07999 * 119.99515 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00176 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99883 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00043 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47216 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47389 * 119.99848 * 8 6 4 11 11 H 1.48501 * 109.47057 * 239.99829 * 8 6 4 12 12 C 1.46902 * 110.99945 * 236.04460 * 2 1 3 13 13 H 1.08995 * 110.76007 * 186.00570 * 12 2 1 14 14 N 1.47310 * 110.85824 * 309.72580 * 12 2 1 15 15 C 1.38025 * 114.48942 * 118.17308 * 14 12 2 16 16 C 1.31682 * 121.13199 * 0.02562 * 15 14 12 17 17 Cl 1.73596 * 126.86758 * 179.97438 * 16 15 14 18 18 S 1.77674 * 106.26594 * 359.97438 * 16 15 14 19 19 H 1.08997 * 109.47186 * 59.99756 * 1 2 3 20 20 H 1.08993 * 109.47654 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47132 * 300.00059 * 1 2 3 22 22 H 1.09001 * 109.46739 * 306.04690 * 3 2 1 23 23 H 1.09000 * 109.47767 * 186.04949 * 3 2 1 24 24 H 0.97004 * 119.99507 * 180.02562 * 7 6 4 25 25 H 0.96999 * 122.75620 * 298.14629 * 14 12 2 26 26 H 1.08000 * 119.43269 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0746 1.5112 2.0487 6 6 2.0269 3.3494 1.5285 7 7 2.7114 4.0020 0.6145 8 14 1.5832 4.1867 3.1382 9 1 0.8158 3.2442 3.9914 10 1 2.8251 4.5942 3.8431 11 1 0.7553 5.3877 2.8597 12 6 1.9954 -0.7660 -1.1376 13 1 3.0801 -0.8530 -1.0759 14 7 1.3620 -2.0938 -1.2139 15 6 0.6455 -2.3202 -2.3717 16 6 0.5586 -1.3999 -3.3095 17 17 -0.2965 -1.5247 -4.8151 18 16 1.4914 -0.0050 -2.7258 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.5612 1.9272 -0.8309 23 1 3.0798 1.3443 -0.1083 24 1 2.9860 4.9182 0.7766 25 1 1.4422 -2.7549 -0.5086 26 1 0.1484 -3.2688 -2.5112 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725563971.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:49 Heat of formation + Delta-G solvation = 16.843734 kcal Electronic energy + Delta-G solvation = -12493.655383 eV Core-core repulsion = 10145.585887 eV Total energy + Delta-G solvation = -2348.069497 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 234.029 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.73937 -37.73081 -36.83613 -34.52604 -30.89483 -29.18679 -27.94403 -25.47750 -22.69489 -21.49907 -19.55031 -18.61180 -17.40090 -16.95500 -16.35948 -16.02667 -15.66264 -15.05780 -14.28421 -14.07656 -13.77405 -13.61560 -13.18295 -12.83032 -12.68994 -12.38906 -12.25794 -12.00882 -11.92980 -11.35395 -11.24779 -10.63629 -10.04894 -9.26377 -8.23551 -8.08102 -6.32064 0.29282 1.02780 1.20627 1.37093 1.42557 1.43038 1.56060 2.23470 2.42497 3.11355 3.19658 4.02945 4.37243 4.40432 4.47959 4.73676 4.99985 5.16605 5.20222 5.50559 5.64476 5.88626 6.07538 6.32378 6.64124 6.82028 7.37210 8.89941 Molecular weight = 234.03amu Principal moments of inertia in cm(-1) A = 0.051526 B = 0.006389 C = 0.006131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.284351 B = 4381.796222 C = 4565.951502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.519 5.519 3 C 0.210 3.790 4 C -0.525 4.525 5 H 0.067 0.933 6 C 0.004 3.996 7 N -0.931 5.931 8 Si 0.970 3.030 9 H -0.261 1.261 10 H -0.278 1.278 11 H -0.281 1.281 12 C 0.362 3.638 13 H 0.123 0.877 14 N -0.705 5.705 15 C 0.148 3.852 16 C -0.201 4.201 17 Cl -0.007 7.007 18 S -0.271 6.271 19 H 0.021 0.979 20 H 0.079 0.921 21 H 0.064 0.936 22 H -0.014 1.014 23 H 0.007 0.993 24 H 0.265 0.735 25 H 0.436 0.564 26 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.842 -14.283 -4.680 15.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.244 5.244 3 C 0.083 3.917 4 C -0.563 4.563 5 H 0.085 0.915 6 C -0.195 4.195 7 N -0.571 5.571 8 Si 0.795 3.205 9 H -0.185 1.185 10 H -0.204 1.204 11 H -0.207 1.207 12 C 0.056 3.944 13 H 0.140 0.860 14 N -0.340 5.340 15 C 0.014 3.986 16 C -0.350 4.350 17 Cl 0.021 6.979 18 S -0.043 6.043 19 H 0.040 0.960 20 H 0.098 0.902 21 H 0.082 0.918 22 H 0.003 0.997 23 H 0.025 0.975 24 H 0.074 0.926 25 H 0.279 0.721 26 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -4.347 -13.162 -4.828 14.678 hybrid contribution -0.493 -0.011 0.308 0.582 sum -4.841 -13.173 -4.520 14.744 Atomic orbital electron populations 1.22210 0.86565 1.01487 1.00761 1.62311 1.09547 1.16631 1.35868 1.19378 0.93870 0.82242 0.96207 1.21415 1.35314 0.97609 1.01994 0.91491 1.25893 0.94923 0.98009 1.00642 1.70105 1.39079 1.11903 1.36050 0.85315 0.78041 0.78201 0.78940 1.18515 1.20404 1.20700 1.24979 0.99168 0.84494 0.85746 0.85995 1.44993 1.54623 1.14391 1.19981 1.20731 0.93056 0.99683 0.85126 1.22692 1.16734 0.98380 0.97151 1.98297 1.74806 1.97340 1.27486 1.87522 1.64754 1.26597 1.25408 0.96031 0.90210 0.91765 0.99673 0.97504 0.92639 0.72138 0.78292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.44 8.87 127.69 1.13 2.57 15 2 N -0.52 -21.04 4.93 -923.19 -4.55 -25.59 15 3 C 0.21 10.85 4.28 85.56 0.37 11.22 15 4 C -0.52 -28.94 8.51 25.60 0.22 -28.72 15 5 H 0.07 3.58 7.10 -2.91 -0.02 3.56 15 6 C 0.00 0.22 5.46 84.65 0.46 0.68 15 7 N -0.93 -55.70 13.29 21.45 0.28 -55.41 15 8 Si 0.97 43.59 29.54 68.60 2.03 45.61 15 9 H -0.26 -11.16 7.11 99.48 0.71 -10.45 15 10 H -0.28 -12.21 7.11 99.48 0.71 -11.50 15 11 H -0.28 -12.43 7.11 99.48 0.71 -11.73 15 12 C 0.36 12.29 4.26 170.50 0.73 13.02 15 13 H 0.12 4.11 8.14 -2.39 -0.02 4.09 15 14 N -0.70 -16.66 4.71 -344.00 -1.62 -18.28 15 15 C 0.15 3.32 11.01 83.04 0.91 4.23 15 16 C -0.20 -5.80 7.30 67.15 0.49 -5.31 15 17 Cl -0.01 -0.19 29.31 -2.72 -0.08 -0.27 15 18 S -0.27 -10.28 20.37 -56.49 -1.15 -11.43 15 19 H 0.02 0.87 7.14 -2.39 -0.02 0.86 15 20 H 0.08 2.42 7.18 -2.39 -0.02 2.41 15 21 H 0.06 2.57 6.86 -2.39 -0.02 2.56 15 22 H -0.01 -0.83 7.33 -2.39 -0.02 -0.85 15 23 H 0.01 0.38 8.08 -2.39 -0.02 0.36 15 24 H 0.26 14.89 8.31 -92.71 -0.77 14.12 15 25 H 0.44 7.62 8.96 -92.71 -0.83 6.78 15 26 H 0.20 2.70 8.06 -2.91 -0.02 2.68 15 Total: -1.00 -64.37 250.32 -0.41 -64.78 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: 0.37 Total: 2.89 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: 4.31 Total: -2.31 kcal Atomic # 7 Polarization: -93.40 SS G_CDS: -5.88 Total: -99.28 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: -10.28 SS G_CDS: -1.15 Total: -11.43 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -0.08 Total: -0.27 kcal Total: -64.37 -0.41 -64.78 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725563971.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.625 kcal (2) G-P(sol) polarization free energy of solvation -64.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds