Wall clock time and date at job start Mon Mar 30 2020 03:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46904 * 111.00053 * 2 1 4 4 C 1.50695 * 109.46798 * 293.95162 * 3 2 1 5 5 H 1.08004 * 120.00546 * 0.27742 * 4 3 2 6 6 C 1.37885 * 119.99721 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 3 9 9 H 1.48494 * 109.47228 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46793 * 120.00131 * 8 6 4 11 11 H 1.48500 * 109.47000 * 240.00224 * 8 6 4 12 12 C 1.46900 * 110.99484 * 123.95108 * 2 1 3 13 13 H 1.09004 * 110.76011 * 179.00133 * 12 2 1 14 14 N 1.47301 * 110.85721 * 55.27956 * 12 2 1 15 15 C 1.38022 * 114.48856 * 241.81802 * 14 12 2 16 16 C 1.31691 * 121.13307 * 0.02562 * 15 14 12 17 17 Cl 1.73598 * 126.86650 * 179.97438 * 16 15 14 18 18 S 1.77673 * 106.26335 * 359.97438 * 16 15 14 19 19 H 1.09007 * 109.46744 * 60.00016 * 1 2 3 20 20 H 1.08999 * 109.47042 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47348 * 300.00503 * 1 2 3 22 22 H 1.08992 * 109.47223 * 173.95231 * 3 2 1 23 23 H 1.08997 * 109.46992 * 53.94783 * 3 2 1 24 24 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 25 25 H 0.96993 * 122.75863 * 61.78525 * 14 12 2 26 26 H 1.08004 * 119.43829 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0705 1.5128 -2.0469 6 6 2.0269 3.3495 -1.5285 7 7 2.7120 4.0019 -0.6150 8 14 1.5831 4.1867 -3.1384 9 1 0.8159 3.2441 -3.9915 10 1 0.7552 5.3876 -2.8599 11 1 2.8251 4.5943 -3.8431 12 6 1.9954 -0.7660 1.1377 13 1 3.0852 -0.7782 1.1241 14 7 1.4513 -2.1348 1.1450 15 6 0.7013 -2.4464 2.2609 16 6 0.5094 -1.5648 3.2202 17 17 -0.4023 -1.7953 4.6795 18 16 1.3702 -0.0924 2.7224 19 1 -0.3633 0.5139 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 3.0797 1.3444 0.1083 23 1 1.5611 1.9274 0.8308 24 1 2.9866 4.9180 -0.7770 25 1 1.6069 -2.7652 0.4245 26 1 0.2643 -3.4301 2.3491 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725563972.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:51 Heat of formation + Delta-G solvation = 36.730535 kcal Electronic energy + Delta-G solvation = -12480.586236 eV Core-core repulsion = 10133.379095 eV Total energy + Delta-G solvation = -2347.207140 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 234.029 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.36115 -36.53618 -35.35743 -32.49737 -29.61518 -27.27662 -26.40530 -23.71737 -20.96156 -20.28919 -18.26373 -16.64546 -15.90965 -15.35151 -14.56357 -14.47481 -14.42302 -13.47360 -12.89759 -12.44993 -12.32585 -12.02260 -11.42578 -11.15333 -10.99873 -10.78083 -10.66945 -10.56545 -10.07216 -9.96831 -9.35607 -8.73319 -8.52325 -7.56182 -6.76432 -6.09860 -4.12851 1.58231 2.13857 2.45903 2.58696 3.27439 3.34892 3.38588 3.52121 4.35795 4.76796 5.26273 5.29981 5.45275 5.62787 5.99500 6.35622 6.67048 6.79635 6.96603 7.23736 7.51799 7.63386 7.84041 7.98625 8.31016 8.92859 9.51326 11.00581 Molecular weight = 234.03amu Principal moments of inertia in cm(-1) A = 0.053417 B = 0.006286 C = 0.006071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.049255 B = 4453.502570 C = 4611.085086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.517 5.517 3 C 0.191 3.809 4 C -0.512 4.512 5 H 0.065 0.935 6 C 0.058 3.942 7 N -0.893 5.893 8 Si 0.900 3.100 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.352 3.648 13 H 0.120 0.880 14 N -0.720 5.720 15 C 0.123 3.877 16 C -0.182 4.182 17 Cl -0.021 7.021 18 S -0.197 6.197 19 H 0.078 0.922 20 H 0.045 0.955 21 H 0.041 0.959 22 H 0.032 0.968 23 H 0.014 0.986 24 H 0.263 0.737 25 H 0.419 0.581 26 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.669 -12.493 5.394 14.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.242 5.242 3 C 0.066 3.934 4 C -0.551 4.551 5 H 0.083 0.917 6 C -0.144 4.144 7 N -0.532 5.532 8 Si 0.728 3.272 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.047 3.953 13 H 0.137 0.863 14 N -0.353 5.353 15 C -0.011 4.011 16 C -0.332 4.332 17 Cl 0.007 6.993 18 S 0.032 5.968 19 H 0.096 0.904 20 H 0.064 0.936 21 H 0.060 0.940 22 H 0.050 0.950 23 H 0.032 0.968 24 H 0.072 0.928 25 H 0.258 0.742 26 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.269 -11.318 5.595 13.042 hybrid contribution -0.672 -0.526 -0.739 1.129 sum -3.941 -11.845 4.856 13.394 Atomic orbital electron populations 1.22316 0.87346 0.99959 1.02402 1.62336 1.08929 1.19034 1.33942 1.19837 0.95602 0.79965 0.98006 1.21076 1.35443 0.97173 1.01389 0.91717 1.24979 0.95129 0.97211 0.97096 1.69967 1.37838 1.11491 1.33893 0.86407 0.78184 0.79362 0.83271 1.19679 1.20985 1.20937 1.25164 0.99530 0.83008 0.87579 0.86264 1.45094 1.55495 1.13512 1.21244 1.20226 0.94619 0.98938 0.87360 1.22714 1.14845 0.99057 0.96550 1.98297 1.72142 1.96335 1.32505 1.87192 1.63544 1.19475 1.26586 0.90382 0.93571 0.94048 0.94966 0.96788 0.92765 0.74229 0.83073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 8.84 60.07 0.53 1.09 15 2 N -0.52 -10.57 4.91 -243.14 -1.19 -11.76 15 3 C 0.19 4.79 4.37 -4.98 -0.02 4.76 15 4 C -0.51 -13.94 8.52 -34.44 -0.29 -14.23 15 5 H 0.06 1.74 7.09 -52.48 -0.37 1.37 15 6 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 7 N -0.89 -26.05 13.29 55.43 0.74 -25.32 15 8 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 15 9 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 10 H -0.28 -6.66 7.11 56.52 0.40 -6.25 15 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 12 C 0.35 6.13 4.19 -62.44 -0.26 5.87 15 13 H 0.12 2.04 8.11 -51.93 -0.42 1.62 15 14 N -0.72 -9.68 4.93 -60.08 -0.30 -9.97 15 15 C 0.12 1.60 10.98 -16.64 -0.18 1.42 15 16 C -0.18 -2.79 7.30 28.86 0.21 -2.58 15 17 Cl -0.02 -0.28 29.31 -51.86 -1.52 -1.80 15 18 S -0.20 -3.67 20.38 -107.50 -2.19 -5.86 15 19 H 0.08 1.59 6.85 -51.92 -0.36 1.24 15 20 H 0.05 0.78 7.27 -51.93 -0.38 0.40 15 21 H 0.04 0.85 6.96 -51.93 -0.36 0.49 15 22 H 0.03 0.86 8.05 -51.93 -0.42 0.44 15 23 H 0.01 0.39 7.51 -51.93 -0.39 0.00 15 24 H 0.26 7.24 8.31 -40.82 -0.34 6.90 15 25 H 0.42 4.57 8.96 -40.82 -0.37 4.21 15 26 H 0.15 1.46 8.06 -52.48 -0.42 1.04 15 LS Contribution 250.51 15.07 3.78 3.78 Total: -1.00 -29.13 250.51 -8.45 -37.58 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -2.62 Total: -0.66 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -0.12 Total: -2.16 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: -0.75 Total: -47.05 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -2.19 Total: -5.86 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.52 Total: -1.80 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.13 -8.45 -37.58 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725563972.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.308 kcal (2) G-P(sol) polarization free energy of solvation -29.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds