Wall clock time and date at job start Mon Mar 30 2020 03:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46904 * 111.00053 * 2 1 4 4 C 1.50695 * 109.46798 * 293.95162 * 3 2 1 5 5 H 1.08004 * 120.00546 * 0.27742 * 4 3 2 6 6 C 1.37885 * 119.99721 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 3 9 9 H 1.48494 * 109.47228 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46793 * 120.00131 * 8 6 4 11 11 H 1.48500 * 109.47000 * 240.00224 * 8 6 4 12 12 C 1.46900 * 110.99484 * 123.95108 * 2 1 3 13 13 H 1.09004 * 110.76011 * 179.00133 * 12 2 1 14 14 N 1.47301 * 110.85721 * 55.27956 * 12 2 1 15 15 C 1.38022 * 114.48856 * 241.81802 * 14 12 2 16 16 C 1.31691 * 121.13307 * 0.02562 * 15 14 12 17 17 Cl 1.73598 * 126.86650 * 179.97438 * 16 15 14 18 18 S 1.77673 * 106.26335 * 359.97438 * 16 15 14 19 19 H 1.09007 * 109.46744 * 60.00016 * 1 2 3 20 20 H 1.08999 * 109.47042 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47348 * 300.00503 * 1 2 3 22 22 H 1.08992 * 109.47223 * 173.95231 * 3 2 1 23 23 H 1.08997 * 109.46992 * 53.94783 * 3 2 1 24 24 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 25 25 H 0.96993 * 122.75863 * 61.78525 * 14 12 2 26 26 H 1.08004 * 119.43829 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0705 1.5128 -2.0469 6 6 2.0269 3.3495 -1.5285 7 7 2.7120 4.0019 -0.6150 8 14 1.5831 4.1867 -3.1384 9 1 0.8159 3.2441 -3.9915 10 1 0.7552 5.3876 -2.8599 11 1 2.8251 4.5943 -3.8431 12 6 1.9954 -0.7660 1.1377 13 1 3.0852 -0.7782 1.1241 14 7 1.4513 -2.1348 1.1450 15 6 0.7013 -2.4464 2.2609 16 6 0.5094 -1.5648 3.2202 17 17 -0.4023 -1.7953 4.6795 18 16 1.3702 -0.0924 2.7224 19 1 -0.3633 0.5139 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 3.0797 1.3444 0.1083 23 1 1.5611 1.9274 0.8308 24 1 2.9866 4.9180 -0.7770 25 1 1.6069 -2.7652 0.4245 26 1 0.2643 -3.4301 2.3491 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725563972.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:51 Heat of formation + Delta-G solvation = 16.291339 kcal Electronic energy + Delta-G solvation = -12481.472546 eV Core-core repulsion = 10133.379095 eV Total energy + Delta-G solvation = -2348.093450 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 234.029 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.71767 -37.73130 -36.84979 -34.53198 -30.89666 -29.20908 -27.90788 -25.48605 -22.70132 -21.50480 -19.53929 -18.60498 -17.39594 -16.97768 -16.34397 -16.03945 -15.65963 -15.05735 -14.29535 -14.07332 -13.76603 -13.61449 -13.19420 -12.82822 -12.69715 -12.38580 -12.26961 -12.00710 -11.91900 -11.35735 -11.26346 -10.63831 -10.03880 -9.27674 -8.24067 -8.07690 -6.32371 0.28740 1.02831 1.19855 1.37045 1.42485 1.43045 1.56031 2.23699 2.42481 3.11086 3.20437 4.00934 4.37102 4.40354 4.48430 4.74328 5.00184 5.16039 5.19133 5.50686 5.65191 5.88200 6.06653 6.32306 6.64306 6.81626 7.36931 8.89559 Molecular weight = 234.03amu Principal moments of inertia in cm(-1) A = 0.053417 B = 0.006286 C = 0.006071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.049255 B = 4453.502570 C = 4611.085086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.518 5.518 3 C 0.210 3.790 4 C -0.525 4.525 5 H 0.067 0.933 6 C 0.004 3.996 7 N -0.931 5.931 8 Si 0.970 3.030 9 H -0.262 1.262 10 H -0.281 1.281 11 H -0.278 1.278 12 C 0.361 3.639 13 H 0.121 0.879 14 N -0.704 5.704 15 C 0.148 3.852 16 C -0.200 4.200 17 Cl -0.007 7.007 18 S -0.269 6.269 19 H 0.063 0.937 20 H 0.076 0.924 21 H 0.025 0.975 22 H 0.008 0.992 23 H -0.017 1.017 24 H 0.265 0.735 25 H 0.435 0.565 26 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.570 -14.398 4.488 15.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.243 5.243 3 C 0.083 3.917 4 C -0.563 4.563 5 H 0.085 0.915 6 C -0.194 4.194 7 N -0.571 5.571 8 Si 0.795 3.205 9 H -0.185 1.185 10 H -0.207 1.207 11 H -0.204 1.204 12 C 0.055 3.945 13 H 0.138 0.862 14 N -0.339 5.339 15 C 0.014 3.986 16 C -0.350 4.350 17 Cl 0.021 6.979 18 S -0.041 6.041 19 H 0.082 0.918 20 H 0.095 0.905 21 H 0.044 0.956 22 H 0.027 0.973 23 H 0.000 1.000 24 H 0.074 0.926 25 H 0.278 0.722 26 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -4.179 -13.279 4.681 14.687 hybrid contribution -0.408 -0.024 -0.367 0.549 sum -4.587 -13.303 4.315 14.718 Atomic orbital electron populations 1.22224 0.86534 1.01392 1.00918 1.62251 1.09530 1.16581 1.35957 1.19380 0.93926 0.82214 0.96144 1.21412 1.35186 0.97652 1.02088 0.91507 1.25892 0.94931 0.97991 1.00634 1.70097 1.39058 1.11917 1.36049 0.85317 0.78046 0.78196 0.78946 1.18544 1.20696 1.20384 1.24927 0.99509 0.84262 0.85779 0.86159 1.45011 1.55000 1.11837 1.22062 1.20739 0.92271 0.99967 0.85604 1.22664 1.16762 0.97178 0.98348 1.98298 1.71730 1.96011 1.31852 1.87451 1.65259 1.23361 1.28009 0.91774 0.90504 0.95647 0.97342 0.99961 0.92619 0.72196 0.78312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.44 8.84 127.69 1.13 2.57 15 2 N -0.52 -21.05 4.91 -923.16 -4.53 -25.58 15 3 C 0.21 10.83 4.37 85.55 0.37 11.21 15 4 C -0.53 -28.88 8.52 25.60 0.22 -28.67 15 5 H 0.07 3.57 7.09 -2.91 -0.02 3.55 15 6 C 0.00 0.23 5.46 84.66 0.46 0.69 15 7 N -0.93 -55.51 13.29 21.45 0.28 -55.22 15 8 Si 0.97 43.51 29.54 68.60 2.03 45.54 15 9 H -0.26 -11.17 7.11 99.48 0.71 -10.46 15 10 H -0.28 -12.41 7.11 99.48 0.71 -11.71 15 11 H -0.28 -12.18 7.11 99.48 0.71 -11.47 15 12 C 0.36 12.29 4.19 170.50 0.71 13.00 15 13 H 0.12 4.09 8.11 -2.39 -0.02 4.08 15 14 N -0.70 -16.77 4.93 -344.00 -1.70 -18.47 15 15 C 0.15 3.32 10.98 83.04 0.91 4.23 15 16 C -0.20 -5.75 7.30 67.14 0.49 -5.26 15 17 Cl -0.01 -0.17 29.31 -2.72 -0.08 -0.25 15 18 S -0.27 -10.10 20.38 -56.49 -1.15 -11.25 15 19 H 0.06 2.58 6.85 -2.38 -0.02 2.57 15 20 H 0.08 2.39 7.27 -2.39 -0.02 2.38 15 21 H 0.02 1.04 6.96 -2.39 -0.02 1.02 15 22 H 0.01 0.47 8.05 -2.39 -0.02 0.45 15 23 H -0.02 -1.00 7.51 -2.39 -0.02 -1.02 15 24 H 0.26 14.85 8.31 -92.71 -0.77 14.08 15 25 H 0.44 7.77 8.96 -92.71 -0.83 6.94 15 26 H 0.20 2.70 8.06 -2.91 -0.02 2.68 15 Total: -1.00 -63.89 250.51 -0.48 -64.37 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: 0.37 Total: 3.09 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 4.30 Total: -2.23 kcal Atomic # 7 Polarization: -93.33 SS G_CDS: -5.95 Total: -99.27 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: -10.10 SS G_CDS: -1.15 Total: -11.25 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -0.08 Total: -0.25 kcal Total: -63.89 -0.48 -64.37 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725563972.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.662 kcal (2) G-P(sol) polarization free energy of solvation -63.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds