Wall clock time and date at job start Mon Mar 30 2020 03:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36934 * 119.99897 * 2 1 4 4 H 1.08003 * 120.00256 * 203.04136 * 3 2 1 5 5 C 1.38817 * 120.00136 * 23.04454 * 3 2 1 6 6 N 1.31624 * 119.99691 * 12.94697 * 5 3 2 7 7 Si 1.86800 * 120.00169 * 192.94837 * 5 3 2 8 8 H 1.48500 * 109.46517 * 89.99982 * 7 5 3 9 9 H 1.48490 * 109.46827 * 209.99814 * 7 5 3 10 10 H 1.48494 * 109.47021 * 330.00207 * 7 5 3 11 11 C 1.46498 * 120.00251 * 180.02562 * 2 1 3 12 12 C 1.50702 * 109.47020 * 89.99438 * 11 2 1 13 13 N 1.26099 * 121.13483 * 359.95814 * 12 11 2 14 14 C 1.47187 * 118.96084 * 179.84230 * 13 12 11 15 15 Cl 1.80305 * 110.80290 * 134.46921 * 14 13 12 16 16 S 1.83928 * 102.68675 * 16.11697 * 14 13 12 17 17 C 1.51729 * 121.24165 * 179.97438 * 12 11 2 18 18 H 1.09003 * 109.47271 * 275.11917 * 1 2 3 19 19 H 1.08998 * 109.47290 * 35.12011 * 1 2 3 20 20 H 1.09000 * 109.47056 * 155.12622 * 1 2 3 21 21 H 0.96997 * 119.99853 * 179.97438 * 6 5 3 22 22 H 1.09010 * 109.47160 * 330.00061 * 11 2 1 23 23 H 1.08995 * 109.47700 * 209.99827 * 11 2 1 24 24 H 1.09001 * 110.80053 * 257.76545 * 14 13 12 25 25 H 1.09000 * 110.99195 * 46.10847 * 17 12 11 26 26 H 1.09003 * 110.99701 * 282.28231 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1651 1.2233 -0.3661 5 6 1.5387 2.3401 0.4706 6 7 0.4119 2.2597 1.1461 7 14 2.3155 4.0074 0.1451 8 1 1.7979 4.5531 -1.1354 9 1 1.9757 4.9365 1.2525 10 1 3.7904 3.8580 0.0593 11 6 2.1976 -1.2687 -0.0006 12 6 2.4486 -1.7031 -1.4216 13 7 2.0477 -1.0101 -2.3958 14 6 2.3221 -1.4779 -3.7641 15 17 0.8506 -1.3364 -4.7964 16 16 2.7711 -3.2426 -3.5052 17 6 3.1918 -2.9891 -1.7317 18 1 -0.3634 0.0917 1.0236 19 1 -0.3634 0.8405 -0.5912 20 1 -0.3633 -0.9323 -0.4323 21 1 -0.0149 3.0661 1.4753 22 1 1.6085 -2.0287 0.5130 23 1 3.1500 -1.1386 0.5133 24 1 3.1545 -0.9269 -4.2019 25 1 2.8203 -3.8118 -1.1209 26 1 4.2662 -2.8608 -1.5997 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725564266.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:41 Heat of formation + Delta-G solvation = 48.288971 kcal Electronic energy + Delta-G solvation = -12609.959128 eV Core-core repulsion = 10263.253200 eV Total energy + Delta-G solvation = -2346.705929 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 234.029 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.13408 -35.94384 -34.97383 -31.37465 -29.58203 -27.07787 -25.84916 -25.21209 -21.50393 -18.61521 -17.08964 -16.46873 -15.85733 -15.44754 -14.66136 -14.01344 -13.70124 -13.32241 -13.10656 -12.88137 -11.86237 -11.72371 -11.08320 -10.85208 -10.82937 -10.71546 -10.57477 -10.32785 -10.09094 -9.90633 -9.65929 -9.10857 -8.55108 -8.02023 -6.81979 -5.73958 -3.20430 1.23380 1.78794 1.95914 2.72610 3.39116 3.45767 3.46265 4.00547 4.41914 4.57388 4.92028 5.13566 5.33869 5.44624 5.61595 6.10778 6.13742 6.30229 6.79285 7.43258 7.71599 7.81425 7.89361 8.37052 9.20114 9.81697 10.29317 11.30869 Molecular weight = 234.03amu Principal moments of inertia in cm(-1) A = 0.031306 B = 0.008037 C = 0.007418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.184857 B = 3482.936478 C = 3773.766952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.167 3.833 2 N -0.576 5.576 3 C -0.248 4.248 4 H 0.065 0.935 5 C 0.006 3.994 6 N -0.905 5.905 7 Si 0.905 3.095 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.195 3.805 12 C 0.169 3.831 13 N -0.462 5.462 14 C 0.199 3.801 15 Cl -0.121 7.121 16 S -0.318 6.318 17 C -0.081 4.081 18 H 0.033 0.967 19 H 0.042 0.958 20 H -0.003 1.003 21 H 0.253 0.747 22 H 0.075 0.925 23 H 0.083 0.917 24 H 0.141 0.859 25 H 0.125 0.875 26 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.808 -9.634 -5.222 11.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.295 5.295 3 C -0.378 4.378 4 H 0.083 0.917 5 C -0.192 4.192 6 N -0.549 5.549 7 Si 0.735 3.265 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.062 3.938 12 C -0.032 4.032 13 N -0.169 5.169 14 C -0.046 4.046 15 Cl -0.095 7.095 16 S -0.095 6.095 17 C -0.233 4.233 18 H 0.051 0.949 19 H 0.061 0.939 20 H 0.015 0.985 21 H 0.063 0.937 22 H 0.093 0.907 23 H 0.101 0.899 24 H 0.159 0.841 25 H 0.143 0.857 26 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.081 -9.596 -6.306 12.187 hybrid contribution 0.732 1.142 0.025 1.357 sum 4.814 -8.455 -6.281 11.580 Atomic orbital electron populations 1.20789 0.81986 0.95809 0.99158 1.43655 1.02031 0.99857 1.83919 1.19053 0.98045 0.85523 1.35153 0.91731 1.24965 0.97738 0.98441 0.98085 1.70067 1.19362 1.27267 1.38234 0.86258 0.78650 0.84166 0.77430 1.21483 1.21779 1.20572 1.19840 0.98167 0.90227 0.85572 1.27659 0.87023 0.88314 1.00218 1.71217 1.20335 1.29219 0.96168 1.27986 0.91150 0.91260 0.94214 1.98748 1.44273 1.97843 1.68597 1.88475 1.86972 1.18590 1.15486 1.24783 1.04914 1.01171 0.92459 0.94890 0.93883 0.98488 0.93705 0.90703 0.89906 0.84125 0.85731 0.86479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.07 8.98 59.85 0.54 4.60 15 2 N -0.58 -13.67 2.39 -182.50 -0.44 -14.11 15 3 C -0.25 -6.56 9.65 -15.06 -0.15 -6.70 15 4 H 0.06 1.69 7.86 -52.48 -0.41 1.27 15 5 C 0.01 0.17 5.10 -17.43 -0.09 0.08 15 6 N -0.90 -25.93 10.71 55.49 0.59 -25.33 15 7 Si 0.90 21.79 29.57 -169.99 -5.03 16.76 15 8 H -0.29 -7.06 7.11 56.52 0.40 -6.65 15 9 H -0.29 -7.05 7.11 56.52 0.40 -6.65 15 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 11 C 0.19 3.45 6.12 -5.19 -0.03 3.42 15 12 C 0.17 2.76 6.95 -79.17 -0.55 2.21 15 13 N -0.46 -8.74 9.98 -51.15 -0.51 -9.25 15 14 C 0.20 3.25 5.26 60.22 0.32 3.57 15 15 Cl -0.12 -2.03 29.08 -51.86 -1.51 -3.54 15 16 S -0.32 -4.67 23.22 -107.50 -2.50 -7.16 15 17 C -0.08 -0.99 7.40 36.51 0.27 -0.72 15 18 H 0.03 0.85 7.34 -51.93 -0.38 0.47 15 19 H 0.04 1.16 7.34 -51.93 -0.38 0.78 15 20 H 0.00 -0.08 8.03 -51.93 -0.42 -0.49 15 21 H 0.25 7.06 8.31 -40.82 -0.34 6.72 15 22 H 0.08 1.16 8.07 -51.92 -0.42 0.74 15 23 H 0.08 1.35 8.04 -51.93 -0.42 0.94 15 24 H 0.14 2.09 8.14 -51.93 -0.42 1.67 15 25 H 0.12 1.24 8.14 -51.93 -0.42 0.82 15 26 H 0.12 1.19 8.14 -51.93 -0.42 0.77 15 LS Contribution 255.16 15.07 3.85 3.85 Total: -1.00 -30.02 255.16 -8.06 -38.08 By element: Atomic # 1 Polarization: -2.94 SS G_CDS: -2.83 Total: -5.77 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: 0.31 Total: 6.47 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: -0.35 Total: -48.69 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Atomic # 16 Polarization: -4.67 SS G_CDS: -2.50 Total: -7.16 kcal Atomic # 17 Polarization: -2.03 SS G_CDS: -1.51 Total: -3.54 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.02 -8.06 -38.08 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725564266.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.371 kcal (2) G-P(sol) polarization free energy of solvation -30.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds