Wall clock time and date at job start Mon Mar 30 2020 03:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36934 * 119.99897 * 2 1 4 4 H 1.08003 * 120.00256 * 203.04136 * 3 2 1 5 5 C 1.38817 * 120.00136 * 23.04454 * 3 2 1 6 6 N 1.31624 * 119.99691 * 12.94697 * 5 3 2 7 7 Si 1.86800 * 120.00169 * 192.94837 * 5 3 2 8 8 H 1.48500 * 109.46517 * 89.99982 * 7 5 3 9 9 H 1.48490 * 109.46827 * 209.99814 * 7 5 3 10 10 H 1.48494 * 109.47021 * 330.00207 * 7 5 3 11 11 C 1.46498 * 120.00251 * 180.02562 * 2 1 3 12 12 C 1.50702 * 109.47020 * 89.99438 * 11 2 1 13 13 N 1.26099 * 121.13483 * 359.95814 * 12 11 2 14 14 C 1.47187 * 118.96084 * 179.84230 * 13 12 11 15 15 Cl 1.80305 * 110.80290 * 134.46921 * 14 13 12 16 16 S 1.83928 * 102.68675 * 16.11697 * 14 13 12 17 17 C 1.51729 * 121.24165 * 179.97438 * 12 11 2 18 18 H 1.09003 * 109.47271 * 275.11917 * 1 2 3 19 19 H 1.08998 * 109.47290 * 35.12011 * 1 2 3 20 20 H 1.09000 * 109.47056 * 155.12622 * 1 2 3 21 21 H 0.96997 * 119.99853 * 179.97438 * 6 5 3 22 22 H 1.09010 * 109.47160 * 330.00061 * 11 2 1 23 23 H 1.08995 * 109.47700 * 209.99827 * 11 2 1 24 24 H 1.09001 * 110.80053 * 257.76545 * 14 13 12 25 25 H 1.09000 * 110.99195 * 46.10847 * 17 12 11 26 26 H 1.09003 * 110.99701 * 282.28231 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1651 1.2233 -0.3661 5 6 1.5387 2.3401 0.4706 6 7 0.4119 2.2597 1.1461 7 14 2.3155 4.0074 0.1451 8 1 1.7979 4.5531 -1.1354 9 1 1.9757 4.9365 1.2525 10 1 3.7904 3.8580 0.0593 11 6 2.1976 -1.2687 -0.0006 12 6 2.4486 -1.7031 -1.4216 13 7 2.0477 -1.0101 -2.3958 14 6 2.3221 -1.4779 -3.7641 15 17 0.8506 -1.3364 -4.7964 16 16 2.7711 -3.2426 -3.5052 17 6 3.1918 -2.9891 -1.7317 18 1 -0.3634 0.0917 1.0236 19 1 -0.3634 0.8405 -0.5912 20 1 -0.3633 -0.9323 -0.4323 21 1 -0.0149 3.0661 1.4753 22 1 1.6085 -2.0287 0.5130 23 1 3.1500 -1.1386 0.5133 24 1 3.1545 -0.9269 -4.2019 25 1 2.8203 -3.8118 -1.1209 26 1 4.2662 -2.8608 -1.5997 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725564266.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:40 Heat of formation + Delta-G solvation = 28.831218 kcal Electronic energy + Delta-G solvation = -12610.802880 eV Core-core repulsion = 10263.253200 eV Total energy + Delta-G solvation = -2347.549680 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 234.029 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.48251 -37.30099 -36.66112 -33.24274 -30.90023 -28.46491 -27.79123 -26.64228 -23.33870 -19.94091 -18.75020 -17.94158 -17.19088 -16.81168 -16.38550 -15.48402 -15.25037 -14.82357 -14.66832 -14.03602 -13.52810 -13.40080 -12.82303 -12.65864 -12.50064 -12.17784 -12.03204 -11.96841 -11.85650 -11.74719 -11.02973 -10.57583 -10.34500 -9.13569 -8.75686 -7.77607 -5.24430 0.03513 0.65286 0.79349 1.46655 1.49826 1.50947 1.56451 2.52303 2.79584 3.19643 3.45512 3.72841 3.89390 4.26216 4.48035 4.75362 4.78033 4.88860 4.95263 5.41466 5.68910 5.76872 6.35352 6.66344 7.19795 7.90661 8.33616 9.25849 Molecular weight = 234.03amu Principal moments of inertia in cm(-1) A = 0.031306 B = 0.008037 C = 0.007418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.184857 B = 3482.936478 C = 3773.766952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.188 3.812 2 N -0.595 5.595 3 C -0.239 4.239 4 H 0.067 0.933 5 C -0.052 4.052 6 N -0.938 5.938 7 Si 0.958 3.042 8 H -0.298 1.298 9 H -0.296 1.296 10 H -0.266 1.266 11 C 0.189 3.811 12 C 0.177 3.823 13 N -0.513 5.513 14 C 0.198 3.802 15 Cl -0.136 7.136 16 S -0.320 6.320 17 C -0.066 4.066 18 H 0.011 0.989 19 H 0.003 0.997 20 H 0.019 0.981 21 H 0.245 0.755 22 H 0.103 0.897 23 H 0.102 0.898 24 H 0.150 0.850 25 H 0.157 0.843 26 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.488 -11.283 -5.254 14.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.314 5.314 3 C -0.369 4.369 4 H 0.085 0.915 5 C -0.246 4.246 6 N -0.585 5.585 7 Si 0.788 3.212 8 H -0.225 1.225 9 H -0.223 1.223 10 H -0.191 1.191 11 C 0.060 3.940 12 C -0.022 4.022 13 N -0.222 5.222 14 C -0.046 4.046 15 Cl -0.109 7.109 16 S -0.097 6.097 17 C -0.217 4.217 18 H 0.030 0.970 19 H 0.022 0.978 20 H 0.038 0.962 21 H 0.055 0.945 22 H 0.121 0.879 23 H 0.120 0.880 24 H 0.168 0.832 25 H 0.174 0.826 26 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.809 -11.297 -6.349 14.201 hybrid contribution 0.266 1.519 0.012 1.543 sum 6.075 -9.778 -6.336 13.140 Atomic orbital electron populations 1.20403 0.82990 0.95127 0.97183 1.43782 1.01801 1.01347 1.84513 1.19310 0.97943 0.86698 1.32964 0.91492 1.25623 0.98611 1.01348 0.99054 1.70203 1.20861 1.27258 1.40167 0.85391 0.78589 0.80856 0.76347 1.22548 1.22254 1.19085 1.20173 0.98878 0.88293 0.86699 1.27292 0.86619 0.89555 0.98753 1.71157 1.22110 1.31314 0.97607 1.27975 0.90781 0.92736 0.93157 1.98744 1.45222 1.97999 1.68971 1.88524 1.86795 1.16960 1.17373 1.24840 1.06196 0.99821 0.90854 0.97026 0.97817 0.96244 0.94539 0.87918 0.88014 0.83248 0.82562 0.83489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.19 8.98 127.77 1.15 10.33 15 2 N -0.59 -27.52 2.39 -731.29 -1.75 -29.27 15 3 C -0.24 -12.43 9.65 84.04 0.81 -11.62 15 4 H 0.07 3.40 7.86 -2.91 -0.02 3.37 15 5 C -0.05 -2.84 5.10 84.86 0.43 -2.41 15 6 N -0.94 -54.88 10.71 21.65 0.23 -54.65 15 7 Si 0.96 45.13 29.57 68.60 2.03 47.15 15 8 H -0.30 -14.34 7.11 99.48 0.71 -13.64 15 9 H -0.30 -14.00 7.11 99.48 0.71 -13.29 15 10 H -0.27 -11.76 7.11 99.48 0.71 -11.05 15 11 C 0.19 6.12 6.12 85.63 0.52 6.64 15 12 C 0.18 5.21 6.95 47.13 0.33 5.54 15 13 N -0.51 -18.42 9.98 -309.16 -3.08 -21.51 15 14 C 0.20 6.14 5.26 127.64 0.67 6.82 15 15 Cl -0.14 -4.46 29.08 -2.72 -0.08 -4.54 15 16 S -0.32 -8.39 23.22 -56.49 -1.31 -9.70 15 17 C -0.07 -1.30 7.40 71.56 0.53 -0.77 15 18 H 0.01 0.61 7.34 -2.39 -0.02 0.59 15 19 H 0.00 0.17 7.34 -2.39 -0.02 0.15 15 20 H 0.02 0.83 8.03 -2.39 -0.02 0.81 15 21 H 0.25 14.12 8.31 -92.71 -0.77 13.35 15 22 H 0.10 2.77 8.07 -2.38 -0.02 2.75 15 23 H 0.10 2.93 8.04 -2.39 -0.02 2.91 15 24 H 0.15 4.23 8.14 -2.39 -0.02 4.21 15 25 H 0.16 2.20 8.14 -2.39 -0.02 2.18 15 26 H 0.15 2.17 8.14 -2.39 -0.02 2.15 15 Total: -1.00 -65.14 255.16 1.66 -63.48 By element: Atomic # 1 Polarization: -6.68 SS G_CDS: 1.18 Total: -5.50 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: 4.44 Total: 14.53 kcal Atomic # 7 Polarization: -100.82 SS G_CDS: -4.60 Total: -105.42 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.31 Total: -9.70 kcal Atomic # 17 Polarization: -4.46 SS G_CDS: -0.08 Total: -4.54 kcal Total: -65.14 1.66 -63.48 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725564266.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.311 kcal (2) G-P(sol) polarization free energy of solvation -65.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds