Wall clock time and date at job start Mon Mar 30 2020 03:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36929 * 120.00183 * 2 1 4 4 H 1.08001 * 120.00492 * 160.16128 * 3 2 1 5 5 C 1.38811 * 119.99810 * 340.16026 * 3 2 1 6 6 N 1.31612 * 120.00538 * 344.21538 * 5 3 2 7 7 Si 1.86802 * 119.99735 * 164.21224 * 5 3 2 8 8 H 1.48498 * 109.47370 * 265.42150 * 7 5 3 9 9 H 1.48508 * 109.46905 * 145.42336 * 7 5 3 10 10 H 1.48495 * 109.47443 * 25.42331 * 7 5 3 11 11 C 1.46504 * 119.99684 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47082 * 269.99768 * 11 2 1 13 13 H 1.09008 * 110.87611 * 303.85074 * 12 11 2 14 14 C 1.51730 * 110.99464 * 180.02562 * 12 11 2 15 15 N 1.25671 * 117.50831 * 226.09735 * 14 12 11 16 16 C 1.47186 * 119.26726 * 359.89370 * 15 14 12 17 17 Cl 1.80304 * 110.79925 * 134.27986 * 16 15 14 18 18 S 1.83922 * 102.51105 * 16.02260 * 16 15 14 19 19 H 1.08996 * 109.46962 * 85.36148 * 1 2 3 20 20 H 1.09001 * 109.46899 * 205.36246 * 1 2 3 21 21 H 1.08996 * 109.47041 * 325.36335 * 1 2 3 22 22 H 0.97001 * 120.01105 * 180.02562 * 6 5 3 23 23 H 1.08996 * 109.47513 * 29.99481 * 11 2 1 24 24 H 1.08998 * 109.46962 * 150.00285 * 11 2 1 25 25 H 1.07996 * 121.24452 * 46.06682 * 14 12 11 26 26 H 1.09006 * 110.80141 * 257.76590 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1817 1.2136 0.3174 5 6 1.5175 2.3523 -0.4080 6 7 0.3872 2.2881 -1.0792 7 14 2.2709 4.0133 -0.0043 8 1 1.6720 4.5369 1.2496 9 1 2.0022 4.9618 -1.1150 10 1 3.7374 3.8617 0.1733 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7111 1.4417 13 1 2.9824 -0.9373 1.9974 14 6 3.2114 -3.0244 1.4815 15 7 2.7960 -3.9112 2.2691 16 6 1.6145 -3.6369 3.1029 17 17 0.4694 -5.0293 3.0686 18 16 0.8788 -2.1659 2.2798 19 1 -0.3633 0.0831 -1.0243 20 1 -0.3633 -0.9286 0.4402 21 1 -0.3633 0.8455 0.5841 22 1 -0.0545 3.1031 -1.3647 23 1 1.6084 -2.0282 -0.5146 24 1 3.1499 -1.1383 -0.5143 25 1 4.0758 -3.1910 0.8560 26 1 1.9087 -3.4015 4.1257 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725577791.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:42 Heat of formation + Delta-G solvation = 45.145846 kcal Electronic energy + Delta-G solvation = -12469.050590 eV Core-core repulsion = 10122.208365 eV Total energy + Delta-G solvation = -2346.842225 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 234.029 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.11943 -36.10187 -35.54329 -31.95290 -29.51524 -27.01045 -25.89725 -24.07783 -20.87575 -20.02958 -17.24663 -16.52700 -15.92696 -15.30581 -14.72476 -14.21537 -13.95855 -13.55194 -12.84214 -12.70694 -11.77425 -11.43467 -11.27045 -10.95700 -10.88107 -10.83103 -10.56761 -10.39631 -10.05672 -9.96245 -9.87309 -9.26997 -8.61896 -7.71645 -6.89382 -5.80821 -3.26787 1.24934 1.73825 2.12583 2.56587 3.33673 3.40091 3.41797 3.79032 4.35535 4.54766 4.80726 5.24141 5.44842 5.64907 5.69438 5.82165 6.25101 6.48202 6.83233 7.27497 7.37203 7.65945 7.75236 8.27703 9.12874 9.76123 10.23479 11.23589 Molecular weight = 234.03amu Principal moments of inertia in cm(-1) A = 0.052737 B = 0.006616 C = 0.006329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.805092 B = 4231.083371 C = 4423.239199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.594 5.594 3 C -0.266 4.266 4 H 0.071 0.929 5 C 0.007 3.993 6 N -0.901 5.901 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.172 3.828 12 C -0.089 4.089 13 H 0.126 0.874 14 C 0.190 3.810 15 N -0.521 5.521 16 C 0.168 3.832 17 Cl -0.126 7.126 18 S -0.237 6.237 19 H 0.030 0.970 20 H 0.013 0.987 21 H 0.043 0.957 22 H 0.254 0.746 23 H 0.053 0.947 24 H 0.071 0.929 25 H 0.189 0.811 26 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.357 -9.886 5.774 12.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.314 5.314 3 C -0.396 4.396 4 H 0.089 0.911 5 C -0.192 4.192 6 N -0.545 5.545 7 Si 0.734 3.266 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.040 3.960 12 C -0.224 4.224 13 H 0.144 0.856 14 C -0.027 4.027 15 N -0.228 5.228 16 C -0.077 4.077 17 Cl -0.100 7.100 18 S -0.013 6.013 19 H 0.049 0.951 20 H 0.031 0.969 21 H 0.062 0.938 22 H 0.064 0.936 23 H 0.072 0.928 24 H 0.090 0.910 25 H 0.206 0.794 26 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.066 -10.259 6.104 12.325 hybrid contribution 0.982 1.243 0.272 1.607 sum 4.049 -9.016 6.377 11.762 Atomic orbital electron populations 1.20901 0.81991 0.96298 0.99338 1.43949 1.02198 1.00226 1.85065 1.19189 0.96704 0.84915 1.38753 0.91101 1.24959 0.97686 0.98427 0.98158 1.70103 1.18866 1.26943 1.38594 0.86252 0.78634 0.84046 0.77657 1.21479 1.21728 1.20380 1.20568 0.97666 0.89667 0.88065 1.25956 0.91562 0.98727 1.06156 0.85640 1.26705 0.97091 0.88505 0.90411 1.70864 1.11897 1.32161 1.07858 1.27792 0.88173 0.88926 1.02794 1.98745 1.62386 1.49735 1.99133 1.89178 1.20608 1.30504 1.60995 0.95148 0.96901 0.93839 0.93595 0.92847 0.91049 0.79404 0.84212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.91 8.58 59.85 0.51 4.42 15 2 N -0.59 -14.03 2.87 -181.12 -0.52 -14.55 15 3 C -0.27 -6.90 9.67 -15.06 -0.15 -7.04 15 4 H 0.07 1.75 7.88 -52.49 -0.41 1.34 15 5 C 0.01 0.19 5.04 -17.43 -0.09 0.10 15 6 N -0.90 -25.76 10.69 55.49 0.59 -25.16 15 7 Si 0.90 21.19 29.58 -169.99 -5.03 16.16 15 8 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 9 H -0.29 -6.92 7.11 56.52 0.40 -6.51 15 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 11 C 0.17 3.11 5.26 -4.04 -0.02 3.09 15 12 C -0.09 -1.37 3.65 -27.38 -0.10 -1.47 15 13 H 0.13 2.00 8.14 -51.92 -0.42 1.58 15 14 C 0.19 2.33 10.99 -14.29 -0.16 2.17 15 15 N -0.52 -7.19 10.68 -56.08 -0.60 -7.79 15 16 C 0.17 2.41 5.28 60.22 0.32 2.73 15 17 Cl -0.13 -1.84 29.08 -51.86 -1.51 -3.34 15 18 S -0.24 -4.07 20.44 -107.50 -2.20 -6.26 15 19 H 0.03 0.81 7.44 -51.93 -0.39 0.42 15 20 H 0.01 0.29 6.17 -51.93 -0.32 -0.03 15 21 H 0.04 1.16 7.17 -51.93 -0.37 0.79 15 22 H 0.25 7.05 8.31 -40.82 -0.34 6.71 15 23 H 0.05 0.96 8.07 -51.93 -0.42 0.54 15 24 H 0.07 1.18 8.04 -51.93 -0.42 0.77 15 25 H 0.19 1.56 8.06 -52.49 -0.42 1.14 15 26 H 0.14 1.78 8.14 -51.93 -0.42 1.36 15 LS Contribution 250.54 15.07 3.78 3.78 Total: -1.00 -29.52 250.54 -7.90 -37.42 By element: Atomic # 1 Polarization: -1.49 SS G_CDS: -2.73 Total: -4.23 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 0.32 Total: 3.99 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: -0.53 Total: -47.51 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Atomic # 16 Polarization: -4.07 SS G_CDS: -2.20 Total: -6.26 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -1.51 Total: -3.34 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.52 -7.90 -37.42 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725577791.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.564 kcal (2) G-P(sol) polarization free energy of solvation -29.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds