Wall clock time and date at job start Mon Mar 30 2020 03:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36943 * 120.00239 * 2 1 4 4 H 1.08003 * 119.99798 * 202.29855 * 3 2 1 5 5 C 1.38808 * 119.99748 * 22.29232 * 3 2 1 6 6 N 1.31621 * 120.00570 * 11.40218 * 5 3 2 7 7 Si 1.86804 * 119.99875 * 191.40239 * 5 3 2 8 8 H 1.48502 * 109.47127 * 89.99879 * 7 5 3 9 9 H 1.48500 * 109.47042 * 210.00173 * 7 5 3 10 10 H 1.48501 * 109.47067 * 330.00092 * 7 5 3 11 11 C 1.46501 * 120.00086 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47105 * 269.99782 * 11 2 1 13 13 H 1.09010 * 110.87390 * 59.30407 * 12 11 2 14 14 C 1.51728 * 111.02422 * 183.16476 * 12 11 2 15 15 N 1.25678 * 117.50710 * 133.92306 * 14 12 11 16 16 C 1.47185 * 119.26964 * 0.10580 * 15 14 12 17 17 Cl 1.80291 * 110.80078 * 102.22993 * 16 15 14 18 18 S 1.83930 * 102.50460 * 343.97835 * 16 15 14 19 19 H 1.08997 * 109.47142 * 274.22960 * 1 2 3 20 20 H 1.08999 * 109.47037 * 34.22679 * 1 2 3 21 21 H 1.08997 * 109.46815 * 154.23129 * 1 2 3 22 22 H 0.96995 * 120.00550 * 180.02562 * 6 5 3 23 23 H 1.08997 * 109.47449 * 150.00138 * 11 2 1 24 24 H 1.08994 * 109.47288 * 29.99926 * 11 2 1 25 25 H 1.07998 * 121.25124 * 313.90941 * 14 12 11 26 26 H 1.08998 * 110.80077 * 225.72808 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1692 1.2208 -0.3549 5 6 1.5335 2.3431 0.4560 6 7 0.3838 2.2696 1.0926 7 14 2.3358 4.0050 0.1662 8 1 1.8669 4.5621 -1.1281 9 1 1.9671 4.9314 1.2666 10 1 3.8115 3.8425 0.1294 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7097 1.4433 13 1 1.5137 -1.8350 1.9829 14 6 3.2776 -2.9823 1.4857 15 7 4.2431 -3.0217 2.2893 16 6 4.5209 -1.8518 3.1381 17 17 3.9247 -2.1234 4.8178 18 16 3.5577 -0.5213 2.3103 19 1 -0.3633 0.0758 1.0248 20 1 -0.3633 0.8497 -0.5780 21 1 -0.3633 -0.9255 -0.4468 22 1 -0.0470 3.0782 1.4110 23 1 3.1499 -1.1387 -0.5133 24 1 1.6084 -2.0286 -0.5129 25 1 3.0439 -3.8231 0.8493 26 1 5.5853 -1.6169 3.1372 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725577792.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:43 Heat of formation + Delta-G solvation = 25.577769 kcal Electronic energy + Delta-G solvation = -12644.569596 eV Core-core repulsion = 10296.878835 eV Total energy + Delta-G solvation = -2347.690760 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 234.029 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.20816 -37.53791 -36.80027 -33.67130 -31.11960 -28.08513 -27.88429 -25.61435 -22.52758 -21.07246 -18.80388 -18.16787 -17.04581 -16.56555 -16.45128 -15.62234 -15.08755 -14.93651 -14.59751 -14.29414 -13.33990 -12.95750 -12.84819 -12.57879 -12.40332 -12.19199 -12.05270 -11.97498 -11.91505 -11.44070 -11.19472 -10.68263 -10.31010 -8.92125 -8.74774 -7.81589 -5.26094 0.22644 0.55762 1.13377 1.44040 1.46381 1.52855 1.68201 2.50992 2.76763 3.32909 3.41616 3.83854 3.95467 4.15895 4.35607 4.80923 4.89660 4.94118 5.09434 5.39908 5.68457 5.80198 6.28083 6.34998 7.18389 7.88990 8.28704 9.21261 Molecular weight = 234.03amu Principal moments of inertia in cm(-1) A = 0.031747 B = 0.009000 C = 0.007952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.761902 B = 3110.203121 C = 3520.268731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.611 5.611 3 C -0.233 4.233 4 H 0.067 0.933 5 C -0.043 4.043 6 N -0.931 5.931 7 Si 0.950 3.050 8 H -0.284 1.284 9 H -0.301 1.301 10 H -0.273 1.273 11 C 0.171 3.829 12 C -0.078 4.078 13 H 0.106 0.894 14 C 0.210 3.790 15 N -0.525 5.525 16 C 0.170 3.830 17 Cl -0.164 7.164 18 S -0.275 6.275 19 H -0.001 1.001 20 H 0.017 0.983 21 H 0.043 0.957 22 H 0.244 0.756 23 H 0.061 0.939 24 H 0.106 0.894 25 H 0.242 0.758 26 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.827 -11.841 -0.624 12.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.332 5.332 3 C -0.365 4.365 4 H 0.084 0.916 5 C -0.239 4.239 6 N -0.578 5.578 7 Si 0.780 3.220 8 H -0.211 1.211 9 H -0.228 1.228 10 H -0.198 1.198 11 C 0.042 3.958 12 C -0.213 4.213 13 H 0.124 0.876 14 C -0.006 4.006 15 N -0.233 5.233 16 C -0.075 4.075 17 Cl -0.138 7.138 18 S -0.049 6.049 19 H 0.017 0.983 20 H 0.036 0.964 21 H 0.061 0.939 22 H 0.054 0.946 23 H 0.080 0.920 24 H 0.124 0.876 25 H 0.258 0.742 26 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.546 -10.977 -0.005 12.299 hybrid contribution -0.481 1.022 0.478 1.226 sum 5.064 -9.956 0.473 11.180 Atomic orbital electron populations 1.20606 0.82304 0.96698 0.97489 1.44252 1.02345 1.01561 1.85063 1.19259 0.97303 0.86118 1.33828 0.91564 1.25570 0.98246 1.01158 0.98922 1.70202 1.19029 1.26991 1.41598 0.85515 0.78527 0.81248 0.76750 1.21094 1.22805 1.19836 1.21031 0.97471 0.88130 0.89165 1.25661 1.00202 0.91307 1.04166 0.87570 1.27444 0.85268 0.96653 0.91225 1.71104 1.20107 1.24507 1.07566 1.28546 1.03545 0.90475 0.84929 1.98757 1.90216 1.97190 1.27667 1.90041 1.42282 1.15322 1.57231 0.98280 0.96427 0.93877 0.94640 0.92031 0.87591 0.74183 0.82308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 7.83 9.01 127.77 1.15 8.98 15 2 N -0.61 -27.43 2.87 -726.97 -2.09 -29.51 15 3 C -0.23 -12.09 8.31 84.03 0.70 -11.39 15 4 H 0.07 3.46 7.85 -2.91 -0.02 3.43 15 5 C -0.04 -2.38 5.13 84.86 0.44 -1.95 15 6 N -0.93 -54.26 10.59 21.65 0.23 -54.03 15 7 Si 0.95 45.52 29.57 68.60 2.03 47.55 15 8 H -0.28 -13.28 7.11 99.48 0.71 -12.57 15 9 H -0.30 -14.82 7.11 99.48 0.71 -14.11 15 10 H -0.27 -12.73 7.11 99.48 0.71 -12.02 15 11 C 0.17 5.53 5.37 86.38 0.46 5.99 15 12 C -0.08 -2.44 3.67 30.18 0.11 -2.33 15 13 H 0.11 3.58 8.14 -2.38 -0.02 3.56 15 14 C 0.21 4.67 10.99 89.32 0.98 5.65 15 15 N -0.53 -14.05 10.68 -322.57 -3.44 -17.50 15 16 C 0.17 5.23 5.28 127.64 0.67 5.91 15 17 Cl -0.16 -5.20 29.08 -2.72 -0.08 -5.28 15 18 S -0.27 -10.75 21.29 -56.49 -1.20 -11.95 15 19 H 0.00 -0.06 7.42 -2.39 -0.02 -0.08 15 20 H 0.02 0.87 7.19 -2.39 -0.02 0.85 15 21 H 0.04 1.53 7.84 -2.39 -0.02 1.51 15 22 H 0.24 14.12 8.31 -92.71 -0.77 13.34 15 23 H 0.06 1.99 8.03 -2.39 -0.02 1.97 15 24 H 0.11 2.52 7.86 -2.39 -0.02 2.50 15 25 H 0.24 2.57 8.06 -2.91 -0.02 2.55 15 26 H 0.16 4.46 8.14 -2.39 -0.02 4.44 15 Total: -1.00 -65.60 251.98 1.13 -64.47 By element: Atomic # 1 Polarization: -5.78 SS G_CDS: 1.17 Total: -4.61 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 4.51 Total: 10.86 kcal Atomic # 7 Polarization: -95.74 SS G_CDS: -5.30 Total: -101.04 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Atomic # 16 Polarization: -10.75 SS G_CDS: -1.20 Total: -11.95 kcal Atomic # 17 Polarization: -5.20 SS G_CDS: -0.08 Total: -5.28 kcal Total: -65.60 1.13 -64.47 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725577792.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.049 kcal (2) G-P(sol) polarization free energy of solvation -65.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds