Wall clock time and date at job start Mon Mar 30 2020 03:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99912 * 2 1 4 4 H 1.48502 * 109.46821 * 269.99877 * 3 2 1 5 5 H 1.48497 * 109.47229 * 30.00011 * 3 2 1 6 6 H 1.48504 * 109.46997 * 149.99736 * 3 2 1 7 7 C 1.37878 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00011 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00107 * 0.02562 * 7 2 1 10 10 S 1.81396 * 109.47288 * 179.97438 * 9 7 2 11 11 O 1.52197 * 108.33204 * 62.21261 * 10 9 7 12 12 O 1.42095 * 114.64993 * 301.10189 * 10 9 7 13 13 C 1.55356 * 108.33075 * 179.97438 * 10 9 7 14 14 C 1.37335 * 126.20968 * 180.02562 * 13 10 9 15 15 C 1.33522 * 119.92716 * 179.97438 * 14 13 10 16 16 C 1.51048 * 114.10194 * 359.97438 * 15 14 13 17 17 S 1.77182 * 126.21152 * 359.97204 * 13 10 9 18 18 H 0.96996 * 119.99987 * 0.02562 * 1 2 3 19 19 H 1.08995 * 109.47180 * 59.99349 * 9 7 2 20 20 H 1.09006 * 109.46776 * 300.00104 * 9 7 2 21 21 H 0.96697 * 114.00683 * 55.06521 * 11 10 9 22 22 H 1.08003 * 120.03847 * 359.69818 * 14 13 10 23 23 H 1.08004 * 122.94830 * 179.97438 * 15 14 13 24 24 H 1.09008 * 110.57464 * 241.44093 * 16 15 14 25 25 H 1.08996 * 110.70601 * 118.61761 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 16 2.4298 -3.8779 0.0005 11 8 3.2528 -3.8041 1.2787 12 8 3.3220 -3.8949 -1.1053 13 6 1.6264 -5.2076 0.0012 14 6 2.1553 -6.4750 0.0019 15 6 1.3439 -7.5354 0.0029 16 6 -0.1259 -7.1874 0.0038 17 16 -0.1385 -5.3642 0.0025 18 1 -0.4850 0.8400 -0.0004 19 1 0.6247 -2.5571 -0.8896 20 1 0.6241 -2.5567 0.8903 21 1 2.7230 -3.7882 2.0874 22 1 3.2264 -6.6139 -0.0029 23 1 1.7067 -8.5527 0.0031 24 1 -0.6105 -7.5735 0.9007 25 1 -0.6141 -7.5742 -0.8907 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725585647.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:35 Heat of formation + Delta-G solvation = -71.227544 kcal Electronic energy + Delta-G solvation = -12616.038231 eV Core-core repulsion = 10233.900632 eV Total energy + Delta-G solvation = -2382.137598 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 234.017 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.29148 -37.57349 -37.13619 -35.47820 -31.29900 -30.69869 -26.50788 -25.41427 -22.17559 -20.83728 -19.28538 -18.63026 -17.97865 -17.56159 -16.55032 -15.96073 -15.64887 -14.99468 -14.66297 -14.41998 -14.28341 -14.03787 -13.50139 -13.29779 -12.79551 -12.73909 -12.57858 -12.46237 -11.92649 -11.84778 -11.48749 -11.07819 -10.79758 -9.31977 -8.42324 -7.52680 -6.64746 -1.15926 0.94662 1.43651 1.44946 1.47771 1.55982 1.57481 2.01657 2.31466 2.48060 2.93453 3.16383 4.17763 4.51165 4.54668 4.57891 4.68750 4.74375 4.94002 5.26065 5.35573 5.62750 5.76864 6.03202 6.46561 7.11185 8.68724 Molecular weight = 234.02amu Principal moments of inertia in cm(-1) A = 0.045926 B = 0.008435 C = 0.007480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.536020 B = 3318.838475 C = 3742.274053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.038 3.962 3 Si 0.963 3.037 4 H -0.274 1.274 5 H -0.275 1.275 6 H -0.253 1.253 7 C -0.577 4.577 8 H 0.086 0.914 9 C -0.362 4.362 10 S 2.582 3.418 11 O -0.838 6.838 12 O -0.958 6.958 13 C -1.144 5.144 14 C 0.006 3.994 15 C -0.302 4.302 16 C -0.030 4.030 17 S -0.151 6.151 18 H 0.276 0.724 19 H 0.094 0.906 20 H 0.114 0.886 21 H 0.481 0.519 22 H 0.104 0.896 23 H 0.141 0.859 24 H 0.095 0.905 25 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.915 -5.532 5.055 7.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.168 4.168 3 Si 0.786 3.214 4 H -0.199 1.199 5 H -0.200 1.200 6 H -0.177 1.177 7 C -0.615 4.615 8 H 0.104 0.896 9 C -0.501 4.501 10 S 2.793 3.207 11 O -0.708 6.708 12 O -0.955 6.955 13 C -1.359 5.359 14 C -0.014 4.014 15 C -0.324 4.324 16 C -0.178 4.178 17 S 0.073 5.927 18 H 0.085 0.915 19 H 0.112 0.888 20 H 0.132 0.868 21 H 0.353 0.647 22 H 0.122 0.878 23 H 0.159 0.841 24 H 0.114 0.886 25 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.120 -4.625 4.565 6.836 hybrid contribution 0.015 -0.662 0.142 0.677 sum 2.135 -5.287 4.708 7.394 Atomic orbital electron populations 1.70034 1.07636 1.29274 1.46774 1.25721 0.95680 1.02818 0.92581 0.85461 0.79213 0.77814 0.78952 1.19905 1.19986 1.17698 1.20850 0.93765 0.89292 1.57607 0.89625 1.27160 1.08005 1.05782 1.09148 1.01611 0.72857 0.72742 0.73523 1.85710 1.56874 1.94117 1.34074 1.93351 1.64596 1.87787 1.49808 1.29876 1.11667 1.20115 1.74208 1.18338 0.98591 0.89670 0.94811 1.23138 0.92183 0.98536 1.18531 1.22556 0.98432 0.92360 1.04446 1.85113 0.99105 1.10340 1.98189 0.91476 0.88812 0.86825 0.64680 0.87819 0.84105 0.88643 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.13 13.29 21.45 0.28 -45.85 15 2 C 0.04 1.80 5.46 84.65 0.46 2.26 15 3 Si 0.96 37.53 29.54 68.60 2.03 39.55 15 4 H -0.27 -10.71 7.11 99.48 0.71 -10.01 15 5 H -0.27 -10.43 7.11 99.48 0.71 -9.72 15 6 H -0.25 -9.29 7.11 99.48 0.71 -8.58 15 7 C -0.58 -26.61 9.13 25.60 0.23 -26.37 15 8 H 0.09 3.75 7.71 -2.91 -0.02 3.73 15 9 C -0.36 -14.85 4.91 71.24 0.35 -14.50 15 10 S 2.58 92.85 4.05 -55.19 -0.22 92.63 15 11 O -0.84 -22.82 13.43 -126.68 -1.70 -24.52 15 12 O -0.96 -43.45 17.98 -126.68 -2.28 -45.72 15 13 C -1.14 -43.31 5.73 67.61 0.39 -42.92 15 14 C 0.01 0.23 9.59 20.99 0.20 0.43 15 15 C -0.30 -10.36 10.74 24.73 0.27 -10.10 15 16 C -0.03 -0.98 7.35 71.35 0.52 -0.45 15 17 S -0.15 -5.74 22.35 -55.19 -1.23 -6.97 15 18 H 0.28 13.29 8.31 -92.71 -0.77 12.52 15 19 H 0.09 4.26 8.14 -2.39 -0.02 4.24 15 20 H 0.11 4.36 8.14 -2.39 -0.02 4.34 15 21 H 0.48 6.99 9.03 -87.93 -0.79 6.20 15 22 H 0.10 3.66 8.06 -2.91 -0.02 3.64 15 23 H 0.14 4.08 8.06 -2.91 -0.02 4.06 15 24 H 0.10 2.72 8.14 -2.38 -0.02 2.70 15 25 H 0.09 2.62 8.14 -2.39 -0.02 2.60 15 Total: -1.00 -66.53 248.60 -0.29 -66.83 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.41 Total: 15.72 kcal Atomic # 6 Polarization: -94.08 SS G_CDS: 2.42 Total: -91.65 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.28 Total: -45.85 kcal Atomic # 8 Polarization: -66.27 SS G_CDS: -3.98 Total: -70.25 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 2.03 Total: 39.55 kcal Atomic # 16 Polarization: 87.11 SS G_CDS: -1.46 Total: 85.66 kcal Total: -66.53 -0.29 -66.83 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725585647.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.402 kcal (2) G-P(sol) polarization free energy of solvation -66.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds