Wall clock time and date at job start Mon Mar 30 2020 03:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40431 * 126.61863 * 2 1 4 4 H 0.96992 * 126.76397 * 0.02562 * 3 2 1 5 5 C 1.34346 * 106.47581 * 180.12001 * 3 2 1 6 6 N 1.30888 * 108.21239 * 359.58550 * 5 3 2 7 7 C 1.31196 * 126.61674 * 179.65256 * 2 1 3 8 8 N 1.39614 * 125.61355 * 0.07759 * 7 2 1 9 9 S 1.65604 * 119.99901 * 194.98211 * 8 7 2 10 10 O 1.52204 * 109.47251 * 59.99627 * 9 8 7 11 11 O 1.42094 * 109.46995 * 299.99475 * 9 8 7 12 12 C 1.76199 * 109.46648 * 179.97438 * 9 8 7 13 13 H 1.07994 * 120.00243 * 0.02562 * 12 9 8 14 14 C 1.37885 * 119.99726 * 179.97438 * 12 9 8 15 15 N 1.31519 * 119.99817 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 119.99931 * 180.02562 * 14 12 9 17 17 H 1.48493 * 109.47311 * 60.00017 * 16 14 12 18 18 H 1.48501 * 109.46887 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.46780 * 299.99721 * 16 14 12 20 20 H 1.09002 * 109.47496 * 270.34381 * 1 2 3 21 21 H 1.08999 * 109.46942 * 30.34536 * 1 2 3 22 22 H 1.08995 * 109.47441 * 150.34321 * 1 2 3 23 23 H 1.08002 * 125.89767 * 179.85969 * 5 3 2 24 24 H 0.96991 * 119.99922 * 14.97483 * 8 7 2 25 25 H 0.96701 * 113.99440 * 59.99651 * 10 9 8 26 26 H 0.96991 * 119.99692 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3026 1.1271 0.0000 4 1 2.0253 2.0565 0.0003 5 6 3.5639 0.6645 -0.0027 6 7 3.5199 -0.6436 0.0047 7 6 2.2475 -1.0530 0.0064 8 7 1.8214 -2.3825 0.0129 9 16 2.8877 -3.5919 0.3912 10 8 3.4267 -3.3715 1.7974 11 8 3.9644 -3.5811 -0.5359 12 6 2.0626 -5.1469 0.3159 13 1 1.0164 -5.1909 0.0517 14 6 2.7530 -6.3078 0.5933 15 7 4.0273 -6.2542 0.9145 16 14 1.8786 -7.9565 0.5128 17 1 1.3523 -8.1712 -0.8590 18 1 2.8347 -9.0409 0.8522 19 1 0.7536 -7.9679 1.4821 20 1 -0.3634 0.0062 1.0276 21 1 -0.3633 0.8869 -0.5192 22 1 -0.3634 -0.8930 -0.5085 23 1 4.4597 1.2678 -0.0056 24 1 0.9009 -2.5978 -0.2040 25 1 2.7453 -3.3669 2.4835 26 1 4.5130 -7.0708 1.1093 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725587220.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:57 Heat of formation + Delta-G solvation = 29.426554 kcal Electronic energy + Delta-G solvation = -15018.966374 eV Core-core repulsion = 12263.026096 eV Total energy + Delta-G solvation = -2755.940278 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 234.057 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.18936 -36.54588 -35.45452 -34.91895 -34.75004 -34.37752 -31.30676 -28.04882 -27.45433 -23.71828 -22.29741 -19.81665 -19.61559 -19.32730 -17.87499 -16.99378 -16.85858 -16.74868 -15.78274 -15.35761 -15.22102 -15.16415 -13.96581 -13.87758 -13.39430 -13.16641 -12.88531 -12.51304 -12.29509 -11.91973 -11.77624 -11.20784 -10.92089 -10.91201 -10.89163 -10.01296 -9.01893 -8.26853 -6.69404 -5.05236 0.48467 0.55519 1.28502 1.33842 1.42062 2.32481 2.38791 2.80981 3.03797 3.34715 3.71317 4.23043 4.28806 4.49636 4.60693 4.90072 5.16807 5.25264 5.39270 5.65107 6.22071 6.46337 6.47553 6.96654 7.24167 7.45219 7.65827 8.71591 Molecular weight = 234.06amu Principal moments of inertia in cm(-1) A = 0.052253 B = 0.008199 C = 0.007456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.728604 B = 3414.024664 C = 3754.288346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.388 5.388 3 N -0.490 5.490 4 H 0.455 0.545 5 C 0.369 3.631 6 N -0.615 5.615 7 C 0.541 3.459 8 N -0.899 5.899 9 S 1.951 4.049 10 O -0.922 6.922 11 O -1.056 7.056 12 C -0.982 4.982 13 H 0.084 0.916 14 C 0.050 3.950 15 N -0.922 5.922 16 Si 0.931 3.069 17 H -0.269 1.269 18 H -0.284 1.284 19 H -0.247 1.247 20 H 0.086 0.914 21 H 0.117 0.883 22 H 0.101 0.899 23 H 0.289 0.711 24 H 0.356 0.644 25 H 0.407 0.593 26 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.054 23.429 0.857 26.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.190 5.190 3 N -0.216 5.216 4 H 0.307 0.693 5 C 0.073 3.927 6 N -0.349 5.349 7 C 0.181 3.819 8 N -0.630 5.630 9 S 2.060 3.940 10 O -0.770 6.770 11 O -1.047 7.047 12 C -1.108 5.108 13 H 0.102 0.898 14 C -0.154 4.154 15 N -0.559 5.559 16 Si 0.753 3.247 17 H -0.194 1.194 18 H -0.210 1.210 19 H -0.170 1.170 20 H 0.105 0.895 21 H 0.135 0.865 22 H 0.119 0.881 23 H 0.304 0.696 24 H 0.190 0.810 25 H 0.264 0.736 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.183 22.526 0.728 24.731 hybrid contribution -1.134 -1.393 0.095 1.799 sum -11.317 21.133 0.824 23.987 Atomic orbital electron populations 1.22448 0.73358 1.06721 1.04936 1.52394 1.06388 0.96996 1.63229 1.47036 1.03306 1.05595 1.65665 0.69290 1.26690 0.89436 0.90349 0.86183 1.71107 1.20204 1.12897 1.30704 1.27972 0.86658 0.83527 0.83733 1.68538 1.25760 1.02873 1.65807 1.63361 0.82581 0.76513 0.71520 1.85401 1.57308 1.92025 1.42222 1.92486 1.63278 1.87330 1.61593 1.32281 1.07279 1.19613 1.51674 0.89791 1.26095 0.94451 1.03660 0.91184 1.70277 1.10262 1.30114 1.45280 0.85998 0.79732 0.79388 0.79539 1.19406 1.20953 1.17035 0.89531 0.86499 0.88067 0.69601 0.80966 0.73576 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 11.33 127.77 1.45 2.11 15 2 N -0.39 -7.55 3.94 -371.58 -1.46 -9.02 15 3 N -0.49 -5.28 7.33 -60.51 -0.44 -5.73 15 4 H 0.45 -0.16 8.96 -213.12 -1.91 -2.07 15 5 C 0.37 6.41 13.12 180.37 2.37 8.78 15 6 N -0.61 -22.67 10.66 -201.30 -2.15 -24.82 15 7 C 0.54 18.85 8.44 260.91 2.20 21.05 15 8 N -0.90 -38.21 5.92 -59.00 -0.35 -38.56 15 9 S 1.95 119.56 4.34 -56.49 -0.25 119.31 15 10 O -0.92 -55.59 13.56 -126.85 -1.72 -57.31 15 11 O -1.06 -80.57 17.95 -126.85 -2.28 -82.84 15 12 C -0.98 -63.50 9.99 67.74 0.68 -62.83 15 13 H 0.08 4.92 7.81 -2.91 -0.02 4.90 15 14 C 0.05 3.34 5.46 84.66 0.46 3.80 15 15 N -0.92 -66.88 13.16 21.45 0.28 -66.60 15 16 Si 0.93 49.04 29.54 68.60 2.03 51.06 15 17 H -0.27 -13.77 7.11 99.48 0.71 -13.06 15 18 H -0.28 -14.61 7.11 99.48 0.71 -13.91 15 19 H -0.25 -11.77 7.11 99.48 0.71 -11.07 15 20 H 0.09 0.64 8.14 -2.39 -0.02 0.63 15 21 H 0.12 0.27 8.14 -2.39 -0.02 0.25 15 22 H 0.10 1.13 7.30 -2.39 -0.02 1.11 15 23 H 0.29 1.17 8.06 -2.91 -0.02 1.14 15 24 H 0.36 12.43 7.96 -96.75 -0.77 11.66 15 25 H 0.41 19.67 9.03 -87.93 -0.79 18.88 15 26 H 0.27 18.15 8.31 -92.72 -0.77 17.38 15 Total: -1.00 -124.33 249.78 -1.41 -125.74 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -2.23 Total: 15.84 kcal Atomic # 6 Polarization: -34.24 SS G_CDS: 7.15 Total: -27.09 kcal Atomic # 7 Polarization: -140.60 SS G_CDS: -4.12 Total: -144.72 kcal Atomic # 8 Polarization: -136.15 SS G_CDS: -4.00 Total: -140.15 kcal Atomic # 14 Polarization: 49.04 SS G_CDS: 2.03 Total: 51.06 kcal Atomic # 16 Polarization: 119.56 SS G_CDS: -0.25 Total: 119.31 kcal Total: -124.33 -1.41 -125.74 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725587220.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.165 kcal (2) G-P(sol) polarization free energy of solvation -124.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -125.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds