Wall clock time and date at job start Mon Mar 30 2020 03:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.33304 * 125.00951 * 2 1 4 4 C 1.35866 * 108.85205 * 180.12344 * 3 2 1 5 5 N 1.39273 * 126.67477 * 179.86694 * 4 3 2 6 6 S 1.65603 * 120.00350 * 224.71436 * 5 4 3 7 7 O 1.52196 * 109.46851 * 300.00262 * 6 5 4 8 8 O 1.42101 * 109.46848 * 59.99857 * 6 5 4 9 9 C 1.76192 * 109.47366 * 179.97438 * 6 5 4 10 10 H 1.08002 * 120.00306 * 359.97438 * 9 6 5 11 11 C 1.37879 * 120.00344 * 180.02562 * 9 6 5 12 12 N 1.31514 * 119.99350 * 359.97438 * 11 9 6 13 13 Si 1.86798 * 120.00608 * 179.97438 * 11 9 6 14 14 H 1.48490 * 109.47339 * 179.97438 * 13 11 9 15 15 H 1.48493 * 109.47239 * 300.00306 * 13 11 9 16 16 H 1.48504 * 109.46636 * 59.99865 * 13 11 9 17 17 N 1.36250 * 106.64762 * 359.60954 * 4 3 2 18 18 H 0.96999 * 126.83628 * 180.24448 * 17 4 3 19 19 N 1.28730 * 125.00327 * 179.67451 * 2 1 3 20 20 H 1.08998 * 109.47213 * 270.30391 * 1 2 3 21 21 H 1.09006 * 109.46934 * 30.29683 * 1 2 3 22 22 H 1.08991 * 109.47471 * 150.29920 * 1 2 3 23 23 H 1.08000 * 125.57320 * 359.97243 * 3 2 1 24 24 H 0.97005 * 120.00118 * 44.71205 * 5 4 3 25 25 H 0.96704 * 113.99951 * 299.99448 * 7 6 5 26 26 H 0.97005 * 119.99661 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2298 1.0918 0.0000 4 6 3.5348 0.7138 -0.0028 5 7 4.6446 1.5552 -0.0063 6 16 5.9178 1.2424 -1.0180 7 8 6.4964 -0.1281 -0.6965 8 8 5.4677 1.2622 -2.3657 9 6 7.1601 2.4719 -0.7963 10 1 7.0113 3.2672 -0.0808 11 6 8.3220 2.4195 -1.5368 12 7 8.5031 1.4513 -2.4083 13 14 9.6389 3.7233 -1.3022 14 1 10.7805 3.4427 -2.2093 15 1 9.0735 5.0600 -1.6161 16 1 10.1098 3.7034 0.1061 17 7 3.5465 -0.6487 0.0044 18 1 4.3278 -1.2235 0.0079 19 7 2.2034 -1.0544 0.0060 20 1 -0.3633 0.0055 1.0276 21 1 -0.3633 0.8874 -0.5185 22 1 -0.3634 -0.8926 -0.5091 23 1 1.8708 2.1104 -0.0004 24 1 4.6719 2.3245 0.5839 25 1 6.8240 -0.2141 0.2093 26 1 9.3203 1.4146 -2.9295 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725598440.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:32 Heat of formation + Delta-G solvation = 80.554716 kcal Electronic energy + Delta-G solvation = -14843.672230 eV Core-core repulsion = 12089.949035 eV Total energy + Delta-G solvation = -2753.723195 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 234.057 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.39670 -35.54239 -34.81154 -33.38221 -32.82002 -32.14920 -28.54056 -27.95626 -25.72052 -22.17706 -20.86248 -18.51902 -18.25032 -17.43458 -16.34022 -15.57366 -15.44055 -15.07310 -14.87161 -13.96407 -13.81862 -13.27872 -12.80171 -12.73407 -12.20984 -11.58357 -11.15495 -11.08082 -10.93874 -10.57056 -10.32135 -10.01199 -9.44444 -9.10263 -9.03435 -8.40520 -7.46176 -6.48806 -4.96299 -3.19407 1.16929 2.85832 2.98540 3.14971 3.21599 3.24793 3.77674 4.16041 4.61811 4.80224 4.95503 5.04751 5.30269 5.52136 5.70894 6.00351 6.36656 6.66922 7.01502 7.46062 7.53591 7.99164 8.27607 8.38967 8.68469 8.90825 9.17376 10.47612 Molecular weight = 234.06amu Principal moments of inertia in cm(-1) A = 0.069480 B = 0.007068 C = 0.006811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.898233 B = 3960.752645 C = 4109.786884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.225 5.225 3 C -0.050 4.050 4 C 0.254 3.746 5 N -0.964 5.964 6 S 2.081 3.919 7 O -0.886 6.886 8 O -1.001 7.001 9 C -0.964 4.964 10 H 0.091 0.909 11 C 0.122 3.878 12 N -0.850 5.850 13 Si 0.890 3.110 14 H -0.282 1.282 15 H -0.268 1.268 16 H -0.267 1.267 17 N -0.513 5.513 18 H 0.438 0.562 19 N -0.232 5.232 20 H 0.084 0.916 21 H 0.095 0.905 22 H 0.096 0.904 23 H 0.174 0.826 24 H 0.398 0.602 25 H 0.413 0.587 26 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.311 -0.600 9.861 15.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.015 5.015 3 C -0.218 4.218 4 C 0.013 3.987 5 N -0.702 5.702 6 S 2.202 3.798 7 O -0.731 6.731 8 O -0.987 6.987 9 C -1.097 5.097 10 H 0.109 0.891 11 C -0.092 4.092 12 N -0.482 5.482 13 Si 0.714 3.286 14 H -0.207 1.207 15 H -0.193 1.193 16 H -0.192 1.192 17 N -0.258 5.258 18 H 0.284 0.716 19 N -0.210 5.210 20 H 0.103 0.897 21 H 0.113 0.887 22 H 0.115 0.885 23 H 0.191 0.809 24 H 0.234 0.766 25 H 0.271 0.729 26 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.453 -2.380 8.241 15.121 hybrid contribution 2.154 2.099 -0.246 3.017 sum -10.298 -0.282 7.995 13.041 Atomic orbital electron populations 1.22162 0.73847 1.05417 1.04277 1.45290 1.07757 1.06094 1.42317 1.22862 0.90373 0.93433 1.15116 1.19105 0.88438 0.83377 1.07790 1.59290 1.27940 1.35370 1.47595 1.48226 0.75977 0.73723 0.81884 1.85589 1.84212 1.63353 1.39947 1.92757 1.77665 1.83435 1.44865 1.30673 1.19460 1.29065 1.30503 0.89091 1.25047 0.97908 0.94706 0.91538 1.70040 1.27138 1.30606 1.20407 0.86669 0.80445 0.82679 0.78777 1.20743 1.19299 1.19162 1.46207 1.05161 1.04362 1.70092 0.71594 1.81728 0.85479 1.01992 1.51839 0.89708 0.88666 0.88530 0.80860 0.76551 0.72900 0.90893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 11.30 59.85 0.68 1.31 15 2 N -0.23 -3.13 3.66 -68.44 -0.25 -3.38 15 3 C -0.05 -0.75 11.32 -17.76 -0.20 -0.95 15 4 C 0.25 4.73 7.68 -152.54 -1.17 3.56 15 5 N -0.96 -18.74 5.95 31.25 0.19 -18.55 15 6 S 2.08 54.30 4.61 -107.50 -0.50 53.80 15 7 O -0.89 -21.48 12.77 -58.38 -0.75 -22.23 15 8 O -1.00 -33.54 18.10 -58.38 -1.06 -34.60 15 9 C -0.96 -26.68 9.99 30.60 0.31 -26.37 15 10 H 0.09 2.28 7.81 -52.49 -0.41 1.87 15 11 C 0.12 3.54 5.46 -17.82 -0.10 3.44 15 12 N -0.85 -26.32 13.16 55.43 0.73 -25.59 15 13 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 15 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 15 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 16 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 17 N -0.51 -9.58 7.51 31.24 0.23 -9.35 15 18 H 0.44 7.91 8.16 -182.45 -1.49 6.42 15 19 N -0.23 -3.99 13.66 60.35 0.82 -3.16 15 20 H 0.08 0.44 8.14 -51.93 -0.42 0.02 15 21 H 0.09 0.48 8.13 -51.93 -0.42 0.05 15 22 H 0.10 0.65 8.14 -51.93 -0.42 0.23 15 23 H 0.17 1.93 8.06 -52.49 -0.42 1.51 15 24 H 0.40 6.37 8.96 -34.47 -0.31 6.06 15 25 H 0.41 7.44 9.03 67.38 0.61 8.05 15 26 H 0.28 8.05 8.31 -40.82 -0.34 7.71 15 LS Contribution 250.76 15.07 3.78 3.78 Total: -1.00 -43.19 250.76 -4.73 -47.92 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -2.42 Total: 14.30 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -0.49 Total: -19.02 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: 1.72 Total: -60.03 kcal Atomic # 8 Polarization: -55.02 SS G_CDS: -1.80 Total: -56.82 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 54.30 SS G_CDS: -0.50 Total: 53.80 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -43.19 -4.73 -47.92 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725598440.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.472 kcal (2) G-P(sol) polarization free energy of solvation -43.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds