Wall clock time and date at job start Mon Mar 30 2020 03:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.33304 * 125.00951 * 2 1 4 4 C 1.35866 * 108.85205 * 180.12344 * 3 2 1 5 5 N 1.39273 * 126.67477 * 179.86694 * 4 3 2 6 6 S 1.65603 * 120.00350 * 224.71436 * 5 4 3 7 7 O 1.52196 * 109.46851 * 300.00262 * 6 5 4 8 8 O 1.42101 * 109.46848 * 59.99857 * 6 5 4 9 9 C 1.76192 * 109.47366 * 179.97438 * 6 5 4 10 10 H 1.08002 * 120.00306 * 359.97438 * 9 6 5 11 11 C 1.37879 * 120.00344 * 180.02562 * 9 6 5 12 12 N 1.31514 * 119.99350 * 359.97438 * 11 9 6 13 13 Si 1.86798 * 120.00608 * 179.97438 * 11 9 6 14 14 H 1.48490 * 109.47339 * 179.97438 * 13 11 9 15 15 H 1.48493 * 109.47239 * 300.00306 * 13 11 9 16 16 H 1.48504 * 109.46636 * 59.99865 * 13 11 9 17 17 N 1.36250 * 106.64762 * 359.60954 * 4 3 2 18 18 H 0.96999 * 126.83628 * 180.24448 * 17 4 3 19 19 N 1.28730 * 125.00327 * 179.67451 * 2 1 3 20 20 H 1.08998 * 109.47213 * 270.30391 * 1 2 3 21 21 H 1.09006 * 109.46934 * 30.29683 * 1 2 3 22 22 H 1.08991 * 109.47471 * 150.29920 * 1 2 3 23 23 H 1.08000 * 125.57320 * 359.97243 * 3 2 1 24 24 H 0.97005 * 120.00118 * 44.71205 * 5 4 3 25 25 H 0.96704 * 113.99951 * 299.99448 * 7 6 5 26 26 H 0.97005 * 119.99661 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2298 1.0918 0.0000 4 6 3.5348 0.7138 -0.0028 5 7 4.6446 1.5552 -0.0063 6 16 5.9178 1.2424 -1.0180 7 8 6.4964 -0.1281 -0.6965 8 8 5.4677 1.2622 -2.3657 9 6 7.1601 2.4719 -0.7963 10 1 7.0113 3.2672 -0.0808 11 6 8.3220 2.4195 -1.5368 12 7 8.5031 1.4513 -2.4083 13 14 9.6389 3.7233 -1.3022 14 1 10.7805 3.4427 -2.2093 15 1 9.0735 5.0600 -1.6161 16 1 10.1098 3.7034 0.1061 17 7 3.5465 -0.6487 0.0044 18 1 4.3278 -1.2235 0.0079 19 7 2.2034 -1.0544 0.0060 20 1 -0.3633 0.0055 1.0276 21 1 -0.3633 0.8874 -0.5185 22 1 -0.3634 -0.8926 -0.5091 23 1 1.8708 2.1104 -0.0004 24 1 4.6719 2.3245 0.5839 25 1 6.8240 -0.2141 0.2093 26 1 9.3203 1.4146 -2.9295 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725598440.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:31 Heat of formation + Delta-G solvation = 37.805939 kcal Electronic energy + Delta-G solvation = -14845.525956 eV Core-core repulsion = 12089.949035 eV Total energy + Delta-G solvation = -2755.576921 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 234.057 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.43459 -36.71402 -36.42107 -35.00383 -34.60975 -33.73445 -29.99129 -29.52966 -27.49481 -23.64886 -22.64360 -19.87959 -19.71444 -19.06072 -17.76594 -17.16898 -17.04081 -16.76435 -16.34554 -15.46247 -15.37874 -14.75639 -14.09911 -13.81293 -13.64946 -13.23540 -12.97298 -12.90131 -12.53370 -12.32148 -11.94715 -11.61547 -11.11572 -10.94412 -10.64688 -10.06826 -8.83992 -8.31200 -6.73210 -4.96863 -0.13800 1.27419 1.29691 1.32738 1.40854 1.45831 1.88020 2.34764 2.91956 3.38365 3.86739 4.15060 4.21323 4.44115 4.49063 4.76364 4.77818 5.15134 5.46070 5.62752 5.86204 6.38608 6.47188 6.61934 7.08487 7.39621 7.59183 8.66646 Molecular weight = 234.06amu Principal moments of inertia in cm(-1) A = 0.069480 B = 0.007068 C = 0.006811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.898233 B = 3960.752645 C = 4109.786884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.156 5.156 3 C -0.085 4.085 4 C 0.316 3.684 5 N -0.953 5.953 6 S 1.931 4.069 7 O -0.916 6.916 8 O -1.105 7.105 9 C -0.968 4.968 10 H 0.086 0.914 11 C 0.050 3.950 12 N -0.922 5.922 13 Si 0.933 3.067 14 H -0.285 1.285 15 H -0.269 1.269 16 H -0.246 1.246 17 N -0.475 5.475 18 H 0.452 0.548 19 N -0.145 5.145 20 H 0.138 0.862 21 H 0.141 0.859 22 H 0.118 0.882 23 H 0.235 0.765 24 H 0.393 0.607 25 H 0.415 0.585 26 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.596 -2.452 13.303 24.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N 0.051 4.949 3 C -0.256 4.256 4 C 0.067 3.933 5 N -0.686 5.686 6 S 2.044 3.956 7 O -0.766 6.766 8 O -1.094 7.094 9 C -1.095 5.095 10 H 0.104 0.896 11 C -0.154 4.154 12 N -0.559 5.559 13 Si 0.755 3.245 14 H -0.210 1.210 15 H -0.194 1.194 16 H -0.169 1.169 17 N -0.214 5.214 18 H 0.301 0.699 19 N -0.120 5.120 20 H 0.156 0.844 21 H 0.159 0.841 22 H 0.136 0.864 23 H 0.251 0.749 24 H 0.230 0.770 25 H 0.274 0.726 26 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.757 -4.250 11.781 24.242 hybrid contribution 2.507 1.756 -0.858 3.179 sum -18.250 -2.493 10.923 21.415 Atomic orbital electron populations 1.23337 0.67457 1.09026 1.08764 1.46499 1.11348 1.05000 1.32097 1.23845 0.88774 0.95872 1.17157 1.21170 0.91892 0.83346 0.96845 1.62931 1.27079 1.33572 1.45015 1.67056 0.74658 0.72505 0.81355 1.85432 1.84578 1.66438 1.40106 1.92373 1.79444 1.85032 1.52572 1.31880 1.20304 1.30747 1.26599 0.89575 1.26080 1.00728 0.96542 0.92068 1.70263 1.27444 1.34027 1.24188 0.85970 0.78451 0.80485 0.79563 1.21042 1.19422 1.16944 1.47519 1.06229 1.06841 1.60810 0.69933 1.81861 0.86003 1.05195 1.38929 0.84414 0.84088 0.86400 0.74889 0.77013 0.72629 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.08 11.30 127.77 1.44 1.53 15 2 N -0.16 -2.48 3.66 -370.44 -1.36 -3.83 15 3 C -0.09 -1.75 11.32 83.92 0.95 -0.80 15 4 C 0.32 10.16 7.68 131.02 1.01 11.16 15 5 N -0.95 -37.55 5.95 -55.05 -0.33 -37.88 15 6 S 1.93 112.10 4.61 -56.49 -0.26 111.84 15 7 O -0.92 -50.14 12.77 -126.85 -1.62 -51.76 15 8 O -1.10 -82.08 18.10 -126.85 -2.30 -84.38 15 9 C -0.97 -60.86 9.99 67.73 0.68 -60.19 15 10 H 0.09 4.92 7.81 -2.91 -0.02 4.90 15 11 C 0.05 3.26 5.46 84.66 0.46 3.72 15 12 N -0.92 -65.42 13.16 21.45 0.28 -65.14 15 13 Si 0.93 48.22 29.54 68.60 2.03 50.24 15 14 H -0.28 -14.42 7.11 99.48 0.71 -13.71 15 15 H -0.27 -13.54 7.11 99.48 0.71 -12.83 15 16 H -0.25 -11.53 7.11 99.48 0.71 -10.82 15 17 N -0.47 -14.60 7.51 -55.06 -0.41 -15.01 15 18 H 0.45 14.26 8.16 -213.19 -1.74 12.52 15 19 N -0.15 -3.44 13.66 37.02 0.51 -2.93 15 20 H 0.14 -0.54 8.14 -2.39 -0.02 -0.56 15 21 H 0.14 -0.49 8.13 -2.38 -0.02 -0.51 15 22 H 0.12 0.05 8.14 -2.39 -0.02 0.03 15 23 H 0.23 2.70 8.06 -2.91 -0.02 2.68 15 24 H 0.39 12.90 8.96 -96.74 -0.87 12.03 15 25 H 0.42 17.66 9.03 -87.93 -0.79 16.87 15 26 H 0.27 17.80 8.31 -92.70 -0.77 17.03 15 Total: -1.00 -114.72 250.76 -1.07 -115.80 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: -2.15 Total: 27.63 kcal Atomic # 6 Polarization: -49.11 SS G_CDS: 4.54 Total: -44.57 kcal Atomic # 7 Polarization: -123.48 SS G_CDS: -1.31 Total: -124.79 kcal Atomic # 8 Polarization: -132.22 SS G_CDS: -3.92 Total: -136.14 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 2.03 Total: 50.24 kcal Atomic # 16 Polarization: 112.10 SS G_CDS: -0.26 Total: 111.84 kcal Total: -114.72 -1.07 -115.80 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725598440.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.604 kcal (2) G-P(sol) polarization free energy of solvation -114.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -115.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds