Wall clock time and date at job start Mon Mar 30 2020 03:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.33311 * 125.00244 * 2 1 4 4 C 1.35860 * 108.85219 * 180.12205 * 3 2 1 5 5 N 1.39278 * 126.67800 * 179.86544 * 4 3 2 6 6 S 1.65600 * 120.00254 * 224.71567 * 5 4 3 7 7 O 1.52196 * 109.47238 * 59.99699 * 6 5 4 8 8 O 1.42105 * 109.46930 * 299.99468 * 6 5 4 9 9 C 1.76197 * 109.47071 * 179.97438 * 6 5 4 10 10 H 1.07999 * 120.00125 * 359.97438 * 9 6 5 11 11 C 1.37879 * 119.99802 * 179.97438 * 9 6 5 12 12 N 1.31503 * 120.00171 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 119.99679 * 180.02562 * 11 9 6 14 14 H 1.48497 * 109.47378 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46948 * 120.00283 * 13 11 9 16 16 H 1.48501 * 109.47174 * 240.00081 * 13 11 9 17 17 N 1.36257 * 106.64748 * 359.60523 * 4 3 2 18 18 H 0.97006 * 126.83643 * 180.24318 * 17 4 3 19 19 N 1.28727 * 125.01369 * 179.66765 * 2 1 3 20 20 H 1.09000 * 109.47039 * 270.29964 * 1 2 3 21 21 H 1.08993 * 109.47124 * 30.30732 * 1 2 3 22 22 H 1.09005 * 109.46701 * 150.30658 * 1 2 3 23 23 H 1.07994 * 125.57268 * 359.97043 * 3 2 1 24 24 H 0.97004 * 119.99759 * 44.71236 * 5 4 3 25 25 H 0.96699 * 114.00410 * 60.00104 * 7 6 5 26 26 H 0.97007 * 120.00457 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2297 1.0920 0.0000 4 6 3.5347 0.7141 -0.0027 5 7 4.6445 1.5556 -0.0063 6 16 5.9176 1.2429 -1.0180 7 8 5.4356 1.2639 -2.4615 8 8 6.4581 -0.0366 -0.7177 9 6 7.1599 2.4725 -0.7962 10 1 7.0109 3.2678 -0.0808 11 6 8.3222 2.4195 -1.5360 12 7 8.5034 1.4515 -2.4074 13 14 9.6396 3.7228 -1.3003 14 1 9.1956 4.6946 -0.2689 15 1 10.9023 3.0764 -0.8612 16 1 9.8678 4.4338 -2.5839 17 7 3.5465 -0.6484 0.0046 18 1 4.3279 -1.2232 0.0081 19 7 2.2036 -1.0543 0.0061 20 1 -0.3633 0.0054 1.0277 21 1 -0.3633 0.8872 -0.5186 22 1 -0.3633 -0.8928 -0.5091 23 1 1.8705 2.1105 -0.0005 24 1 4.6716 2.3250 0.5839 25 1 5.0536 2.1087 -2.7364 26 1 9.3210 1.4144 -2.9282 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725598441.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:33 Heat of formation + Delta-G solvation = 35.596425 kcal Electronic energy + Delta-G solvation = -14843.714814 eV Core-core repulsion = 12088.042081 eV Total energy + Delta-G solvation = -2755.672732 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 234.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.31330 -36.55349 -36.42357 -35.16173 -34.64124 -33.75536 -29.95545 -29.42221 -27.53727 -23.58476 -22.52006 -19.91006 -19.68733 -19.01225 -17.77188 -17.09940 -16.99780 -16.80994 -16.35319 -15.50049 -15.36705 -14.69840 -14.11017 -13.79267 -13.57843 -13.23906 -12.98728 -12.85093 -12.56341 -12.25516 -11.91093 -11.71952 -11.18576 -10.99203 -10.55023 -10.13669 -8.92047 -8.33897 -6.77630 -5.02701 -0.04817 1.26730 1.29210 1.40269 1.44128 1.53480 2.01638 2.33920 2.86890 3.31728 3.98843 4.13180 4.25449 4.50068 4.57423 4.82607 4.86994 5.01549 5.48093 5.65631 5.90404 6.36814 6.46861 6.73090 7.06923 7.36256 7.50899 8.64190 Molecular weight = 234.06amu Principal moments of inertia in cm(-1) A = 0.069676 B = 0.007053 C = 0.006828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.762359 B = 3968.901345 C = 4099.604067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.158 5.158 3 C -0.062 4.062 4 C 0.286 3.714 5 N -0.930 5.930 6 S 1.937 4.063 7 O -0.941 6.941 8 O -1.073 7.073 9 C -0.968 4.968 10 H 0.088 0.912 11 C 0.050 3.950 12 N -0.921 5.921 13 Si 0.937 3.063 14 H -0.248 1.248 15 H -0.285 1.285 16 H -0.267 1.267 17 N -0.497 5.497 18 H 0.443 0.557 19 N -0.166 5.166 20 H 0.132 0.868 21 H 0.149 0.851 22 H 0.114 0.886 23 H 0.249 0.751 24 H 0.401 0.599 25 H 0.409 0.591 26 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.402 3.794 6.345 25.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N 0.051 4.949 3 C -0.235 4.235 4 C 0.035 3.965 5 N -0.662 5.662 6 S 2.052 3.948 7 O -0.788 6.788 8 O -1.062 7.062 9 C -1.096 5.096 10 H 0.106 0.894 11 C -0.154 4.154 12 N -0.558 5.558 13 Si 0.759 3.241 14 H -0.171 1.171 15 H -0.211 1.211 16 H -0.192 1.192 17 N -0.237 5.237 18 H 0.290 0.710 19 N -0.140 5.140 20 H 0.150 0.850 21 H 0.167 0.833 22 H 0.132 0.868 23 H 0.265 0.735 24 H 0.239 0.761 25 H 0.267 0.733 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -24.065 1.389 5.607 24.748 hybrid contribution 2.907 1.220 -0.315 3.169 sum -21.157 2.610 5.292 21.965 Atomic orbital electron populations 1.23307 0.67495 1.09141 1.08475 1.46442 1.11246 1.05083 1.32160 1.23491 0.87612 0.95823 1.16575 1.20501 0.92031 0.82716 1.01258 1.61648 1.28509 1.31829 1.44174 1.64756 0.80964 0.78592 0.70466 1.85493 1.81086 1.45464 1.66801 1.92448 1.83469 1.49542 1.80781 1.31759 1.20974 1.29610 1.27228 0.89363 1.26061 1.00275 0.96367 0.92723 1.70264 1.27723 1.33320 1.24502 0.85871 0.78819 0.80151 0.79279 1.17106 1.21116 1.19166 1.47478 1.05946 1.07190 1.63054 0.70982 1.81868 0.85666 1.05315 1.41130 0.85030 0.83307 0.86796 0.73516 0.76123 0.73276 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.04 11.30 127.77 1.44 1.48 15 2 N -0.16 -2.42 3.66 -370.44 -1.36 -3.78 15 3 C -0.06 -1.10 11.32 83.92 0.95 -0.15 15 4 C 0.29 9.22 7.68 131.01 1.01 10.22 15 5 N -0.93 -36.08 5.95 -55.05 -0.33 -36.41 15 6 S 1.94 111.27 4.61 -56.49 -0.26 111.01 15 7 O -0.94 -53.79 13.56 -126.85 -1.72 -55.51 15 8 O -1.07 -76.14 17.36 -126.85 -2.20 -78.34 15 9 C -0.97 -60.05 9.99 67.73 0.68 -59.38 15 10 H 0.09 4.97 7.81 -2.91 -0.02 4.95 15 11 C 0.05 3.24 5.46 84.66 0.46 3.70 15 12 N -0.92 -64.81 13.16 21.45 0.28 -64.52 15 13 Si 0.94 47.83 29.54 68.60 2.03 49.86 15 14 H -0.25 -11.66 7.11 99.48 0.71 -10.96 15 15 H -0.29 -14.56 7.11 99.48 0.71 -13.85 15 16 H -0.27 -12.83 7.11 99.48 0.71 -12.12 15 17 N -0.50 -17.64 7.50 -55.06 -0.41 -18.05 15 18 H 0.44 18.52 8.22 -213.19 -1.75 16.77 15 19 N -0.17 -4.31 13.66 37.02 0.51 -3.81 15 20 H 0.13 -0.50 8.14 -2.39 -0.02 -0.52 15 21 H 0.15 -0.91 8.13 -2.39 -0.02 -0.93 15 22 H 0.11 0.02 8.14 -2.38 -0.02 0.00 15 23 H 0.25 1.51 8.06 -2.91 -0.02 1.49 15 24 H 0.40 12.75 8.96 -96.74 -0.87 11.88 15 25 H 0.41 18.52 9.03 -87.93 -0.79 17.73 15 26 H 0.27 17.62 8.31 -92.70 -0.77 16.85 15 Total: -1.00 -111.32 250.86 -1.09 -112.42 By element: Atomic # 1 Polarization: 33.44 SS G_CDS: -2.17 Total: 31.27 kcal Atomic # 6 Polarization: -48.67 SS G_CDS: 4.54 Total: -44.13 kcal Atomic # 7 Polarization: -125.27 SS G_CDS: -1.31 Total: -126.57 kcal Atomic # 8 Polarization: -129.93 SS G_CDS: -3.92 Total: -133.85 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 2.03 Total: 49.86 kcal Atomic # 16 Polarization: 111.27 SS G_CDS: -0.26 Total: 111.01 kcal Total: -111.32 -1.09 -112.42 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725598441.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.013 kcal (2) G-P(sol) polarization free energy of solvation -111.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -112.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds