Wall clock time and date at job start Mon Mar 30 2020 03:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36936 * 120.00182 * 2 1 4 4 H 1.08003 * 120.00113 * 156.52365 * 3 2 1 5 5 C 1.38807 * 119.99944 * 336.79680 * 3 2 1 6 6 N 1.31624 * 120.00352 * 156.43603 * 5 3 2 7 7 Si 1.86807 * 119.99988 * 336.43551 * 5 3 2 8 8 H 1.48492 * 109.47023 * 84.80493 * 7 5 3 9 9 H 1.48502 * 109.47059 * 204.80745 * 7 5 3 10 10 H 1.48498 * 109.46905 * 324.80480 * 7 5 3 11 11 C 1.46502 * 119.99845 * 179.97438 * 2 1 3 12 12 C 1.50708 * 109.46881 * 269.99712 * 11 2 1 13 13 C 1.31706 * 126.88414 * 115.00030 * 12 11 2 14 14 Cl 1.73599 * 119.39958 * 0.02562 * 13 12 11 15 15 N 1.37688 * 121.20253 * 179.97438 * 13 12 11 16 16 C 1.47321 * 114.53321 * 0.02818 * 15 13 12 17 17 S 1.77682 * 126.89021 * 294.68871 * 12 11 2 18 18 H 1.08997 * 109.46981 * 94.37010 * 1 2 3 19 19 H 1.08997 * 109.47351 * 214.36975 * 1 2 3 20 20 H 1.08998 * 109.47301 * 334.37249 * 1 2 3 21 21 H 0.96992 * 120.00230 * 180.02562 * 6 5 3 22 22 H 1.08996 * 109.47688 * 29.99638 * 11 2 1 23 23 H 1.08999 * 109.47428 * 150.00331 * 11 2 1 24 24 H 0.96996 * 122.73616 * 180.02562 * 15 13 12 25 25 H 1.08999 * 110.86449 * 118.16616 * 16 15 13 26 26 H 1.09002 * 110.85874 * 241.61899 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1627 1.2246 0.3726 5 6 1.5399 2.3394 -0.4736 6 7 1.9635 3.5196 -0.0736 7 14 0.1179 2.2167 -1.6789 8 1 -1.1495 2.0196 -0.9307 9 1 0.0338 3.4680 -2.4742 10 1 0.3392 1.0651 -2.5899 11 6 2.1975 -1.2688 0.0006 12 6 2.4487 -1.7031 1.4217 13 6 1.9634 -2.7719 2.0191 14 17 0.9167 -3.8398 1.1373 15 7 2.2720 -3.0582 3.3300 16 6 3.1678 -2.0824 3.9748 17 16 3.4649 -0.8802 2.6247 18 1 -0.3633 -0.0783 -1.0247 19 1 -0.3634 -0.8482 0.5801 20 1 -0.3634 0.9265 0.4445 21 1 1.5371 4.3256 -0.4042 22 1 1.6084 -2.0287 -0.5128 23 1 3.1499 -1.1387 -0.5133 24 1 1.9277 -3.8388 3.7915 25 1 2.6766 -1.6059 4.8232 26 1 4.0997 -2.5560 4.2838 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725603929.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:39 Heat of formation + Delta-G solvation = 57.011006 kcal Electronic energy + Delta-G solvation = -12682.984893 eV Core-core repulsion = 10336.657180 eV Total energy + Delta-G solvation = -2346.327713 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 234.029 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.08989 -36.02552 -35.81534 -31.97627 -30.53274 -26.97964 -26.07021 -25.14255 -21.35874 -19.70614 -17.87581 -16.70607 -16.01558 -15.29880 -14.88881 -14.18246 -13.92858 -13.66447 -13.03130 -12.64350 -12.48171 -12.09089 -11.75941 -11.33998 -11.14938 -10.48609 -10.32406 -10.14423 -10.03689 -9.88390 -9.42679 -8.87247 -8.51652 -7.02429 -6.54544 -5.87851 -3.20771 1.59390 2.04656 2.27015 3.02426 3.41080 3.55183 3.58647 3.59441 4.62003 5.10517 5.14624 5.27045 5.46221 5.52944 6.04194 6.27052 6.34982 6.49740 6.65192 6.79622 6.91460 7.45843 7.99525 8.39555 9.00584 9.80093 10.10666 11.27838 Molecular weight = 234.03amu Principal moments of inertia in cm(-1) A = 0.032546 B = 0.009708 C = 0.007878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.103165 B = 2883.471177 C = 3553.342317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.598 5.598 3 C -0.259 4.259 4 H 0.089 0.911 5 C 0.026 3.974 6 N -0.903 5.903 7 Si 0.886 3.114 8 H -0.287 1.287 9 H -0.306 1.306 10 H -0.278 1.278 11 C 0.226 3.774 12 C -0.165 4.165 13 C 0.145 3.855 14 Cl -0.055 7.055 15 N -0.744 5.744 16 C 0.137 3.863 17 S -0.099 6.099 18 H 0.009 0.991 19 H 0.032 0.968 20 H 0.060 0.940 21 H 0.262 0.738 22 H 0.064 0.936 23 H 0.073 0.927 24 H 0.411 0.589 25 H 0.087 0.913 26 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.151 -14.490 6.018 15.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.319 5.319 3 C -0.387 4.387 4 H 0.106 0.894 5 C -0.173 4.173 6 N -0.546 5.546 7 Si 0.717 3.283 8 H -0.215 1.215 9 H -0.235 1.235 10 H -0.204 1.204 11 C 0.096 3.904 12 C -0.292 4.292 13 C 0.008 3.992 14 Cl -0.028 7.028 15 N -0.384 5.384 16 C -0.098 4.098 17 S 0.136 5.864 18 H 0.027 0.973 19 H 0.050 0.950 20 H 0.079 0.921 21 H 0.071 0.929 22 H 0.082 0.918 23 H 0.091 0.909 24 H 0.248 0.752 25 H 0.105 0.895 26 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.518 -13.230 5.949 14.515 hybrid contribution -1.869 -1.467 -0.315 2.397 sum -1.351 -14.697 5.634 15.798 Atomic orbital electron populations 1.21391 0.84516 1.00603 0.97532 1.44136 1.00645 1.01885 1.85255 1.18896 1.00016 0.83798 1.36000 0.89387 1.25125 0.97957 0.94955 0.99304 1.69895 1.43699 0.97237 1.43784 0.87029 0.82795 0.75695 0.82826 1.21465 1.23461 1.20369 1.19161 0.97138 0.88257 0.85820 1.24561 1.05706 0.95955 1.02930 1.20009 0.99286 0.94410 0.85498 1.98363 1.65433 1.65502 1.73454 1.44417 1.55262 1.29574 1.09114 1.24035 0.95864 0.91856 0.98077 1.86967 1.59997 1.33434 1.06015 0.97286 0.94961 0.92123 0.92869 0.91759 0.90927 0.75165 0.89534 0.89624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.38 8.33 59.85 0.50 2.88 15 2 N -0.60 -14.50 2.71 -182.50 -0.49 -15.00 15 3 C -0.26 -7.30 10.04 -15.06 -0.15 -7.45 15 4 H 0.09 2.66 8.06 -52.48 -0.42 2.24 15 5 C 0.03 0.75 5.17 -17.43 -0.09 0.66 15 6 N -0.90 -28.03 13.97 55.49 0.78 -27.25 15 7 Si 0.89 22.84 24.04 -169.99 -4.09 18.76 15 8 H -0.29 -7.13 6.36 56.52 0.36 -6.77 15 9 H -0.31 -8.03 7.11 56.52 0.40 -7.62 15 10 H -0.28 -7.08 6.90 56.52 0.39 -6.69 15 11 C 0.23 4.59 6.11 -5.19 -0.03 4.55 15 12 C -0.17 -3.09 6.25 -36.18 -0.23 -3.31 15 13 C 0.14 2.30 7.16 -16.80 -0.12 2.18 15 14 Cl -0.06 -0.78 27.68 -51.86 -1.44 -2.21 15 15 N -0.74 -9.72 6.18 -60.66 -0.37 -10.09 15 16 C 0.14 1.76 8.62 60.30 0.52 2.28 15 17 S -0.10 -1.81 23.32 -107.50 -2.51 -4.32 15 18 H 0.01 0.21 5.78 -51.93 -0.30 -0.09 15 19 H 0.03 0.65 8.10 -51.93 -0.42 0.23 15 20 H 0.06 1.48 5.76 -51.93 -0.30 1.19 15 21 H 0.26 7.72 8.31 -40.82 -0.34 7.38 15 22 H 0.06 1.18 6.74 -51.93 -0.35 0.83 15 23 H 0.07 1.48 8.04 -51.93 -0.42 1.07 15 24 H 0.41 4.21 8.96 -40.82 -0.37 3.84 15 25 H 0.09 1.00 8.14 -51.93 -0.42 0.58 15 26 H 0.09 0.90 8.14 -51.93 -0.42 0.47 15 LS Contribution 245.98 15.07 3.71 3.71 Total: -1.00 -31.33 245.98 -6.63 -37.96 By element: Atomic # 1 Polarization: -0.74 SS G_CDS: -2.61 Total: -3.35 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 0.40 Total: 1.80 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: -0.09 Total: -52.34 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.09 Total: 18.76 kcal Atomic # 16 Polarization: -1.81 SS G_CDS: -2.51 Total: -4.32 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.44 Total: -2.21 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -31.33 -6.63 -37.96 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725603929.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.973 kcal (2) G-P(sol) polarization free energy of solvation -31.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds