Wall clock time and date at job start Mon Mar 30 2020 03:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.33778 * 125.55490 * 2 1 4 4 C 1.35356 * 106.49379 * 180.11150 * 3 2 1 5 5 S 1.76195 * 126.90979 * 179.90151 * 4 3 2 6 6 O 1.52204 * 109.46871 * 149.71110 * 5 4 3 7 7 O 1.42106 * 109.47039 * 29.71436 * 5 4 3 8 8 N 1.65597 * 109.47363 * 269.70930 * 5 4 3 9 9 C 1.36943 * 119.99912 * 179.72436 * 8 5 4 10 10 H 1.08002 * 119.99793 * 0.27628 * 9 8 5 11 11 C 1.38811 * 120.00012 * 180.27700 * 9 8 5 12 12 N 1.31611 * 120.00081 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99814 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47483 * 90.00178 * 13 11 9 15 15 H 1.48498 * 109.47011 * 210.00042 * 13 11 9 16 16 H 1.48502 * 109.47495 * 329.99664 * 13 11 9 17 17 N 1.35307 * 106.17511 * 359.64460 * 4 3 2 18 18 H 0.96997 * 125.87236 * 180.24839 * 17 4 3 19 19 N 1.28629 * 125.56153 * 179.70033 * 2 1 3 20 20 H 1.09003 * 109.47258 * 270.27135 * 1 2 3 21 21 H 1.09007 * 109.47143 * 30.27265 * 1 2 3 22 22 H 1.08998 * 109.46970 * 150.27438 * 1 2 3 23 23 H 1.07999 * 126.75535 * 359.97438 * 3 2 1 24 24 H 0.96699 * 113.99766 * 60.00390 * 6 5 4 25 25 H 0.97001 * 120.00224 * 0.02562 * 8 5 4 26 26 H 0.97008 * 120.00329 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2429 1.0884 0.0000 4 6 3.5222 0.6463 -0.0025 5 16 4.9824 1.6323 -0.0061 6 8 6.0978 0.8897 0.7156 7 8 4.7252 2.8621 0.6579 8 7 5.4410 1.9339 -1.5685 9 6 6.5538 2.6909 -1.8214 10 1 7.1348 3.0875 -1.0019 11 6 6.9350 2.9486 -3.1311 12 7 8.0047 3.6757 -3.3742 13 14 5.9296 2.2632 -4.5484 14 1 4.8759 3.2394 -4.9255 15 1 6.8180 2.0194 -5.7131 16 1 5.2956 0.9860 -4.1336 17 7 3.4541 -0.7050 0.0041 18 1 4.2105 -1.3122 0.0077 19 7 2.2131 -1.0464 0.0055 20 1 -0.3634 0.0049 1.0277 21 1 -0.3634 0.8876 -0.5181 22 1 -0.3633 -0.8924 -0.5096 23 1 1.9147 2.1173 -0.0004 24 1 6.3268 0.0393 0.3161 25 1 4.9190 1.5781 -2.3045 26 1 8.2714 3.8554 -4.2894 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725613425.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:40 Heat of formation + Delta-G solvation = 92.733677 kcal Electronic energy + Delta-G solvation = -14851.924293 eV Core-core repulsion = 12098.729218 eV Total energy + Delta-G solvation = -2753.195075 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 234.057 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.51616 -35.88347 -35.49369 -33.89536 -33.48870 -30.91951 -30.39373 -29.08496 -23.43943 -22.96982 -22.60467 -19.15041 -18.75145 -17.61178 -16.92394 -16.50175 -16.04781 -15.08851 -14.34835 -14.13114 -13.81613 -13.70740 -13.35716 -12.66963 -12.35413 -12.09026 -11.73114 -10.93253 -10.83967 -10.77787 -10.26636 -9.82969 -9.54243 -9.39753 -9.26785 -9.15470 -7.56389 -5.67465 -4.20702 -3.10455 0.99068 1.98766 2.10333 3.24767 3.40190 3.44669 3.49616 4.24065 4.48006 4.60000 4.68121 4.88469 5.00531 5.09580 5.33113 5.55606 5.70618 6.26383 6.48650 7.09337 7.60738 7.89948 7.95563 8.44761 9.08549 9.85717 10.01897 11.51159 Molecular weight = 234.06amu Principal moments of inertia in cm(-1) A = 0.032579 B = 0.009115 C = 0.007968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.254258 B = 3071.069751 C = 3513.171083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.220 5.220 3 C 0.001 3.999 4 C -0.419 4.419 5 S 1.987 4.013 6 O -0.888 6.888 7 O -0.967 6.967 8 N -1.004 6.004 9 C -0.270 4.270 10 H 0.092 0.908 11 C 0.010 3.990 12 N -0.931 5.931 13 Si 0.889 3.111 14 H -0.285 1.285 15 H -0.293 1.293 16 H -0.276 1.276 17 N -0.348 5.348 18 H 0.457 0.543 19 N -0.141 5.141 20 H 0.098 0.902 21 H 0.108 0.892 22 H 0.103 0.897 23 H 0.198 0.802 24 H 0.413 0.587 25 H 0.355 0.645 26 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.760 -14.055 5.220 23.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.014 5.014 3 C -0.161 4.161 4 C -0.619 4.619 5 S 2.071 3.929 6 O -0.733 6.733 7 O -0.952 6.952 8 N -0.749 5.749 9 C -0.403 4.403 10 H 0.109 0.891 11 C -0.187 4.187 12 N -0.579 5.579 13 Si 0.719 3.281 14 H -0.212 1.212 15 H -0.220 1.220 16 H -0.202 1.202 17 N -0.089 5.089 18 H 0.305 0.695 19 N -0.118 5.118 20 H 0.117 0.883 21 H 0.127 0.873 22 H 0.121 0.879 23 H 0.215 0.785 24 H 0.270 0.730 25 H 0.183 0.817 26 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.753 -14.018 6.312 23.484 hybrid contribution -0.177 0.194 -2.116 2.133 sum -17.930 -13.824 4.196 23.026 Atomic orbital electron populations 1.22488 0.72167 1.06452 1.05641 1.46996 1.09044 1.05238 1.40136 1.23160 0.88672 0.94484 1.09828 1.39259 1.22251 0.90034 1.10351 1.60504 0.73871 0.83397 0.75141 1.85409 1.74478 1.41872 1.71523 1.92838 1.81123 1.45799 1.75395 1.54050 1.33514 1.62046 1.25247 1.19401 1.02107 1.25040 0.93794 0.89066 1.25182 0.97171 0.98967 0.97427 1.69788 1.26288 1.42543 1.19243 0.86471 0.79858 0.78931 0.82821 1.21179 1.21977 1.20157 1.43297 1.04170 1.07391 1.54055 0.69471 1.77889 0.91882 1.08673 1.33343 0.88319 0.87350 0.87851 0.78501 0.72964 0.81719 0.93307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.29 11.35 59.85 0.68 0.97 15 2 N -0.22 -2.13 3.69 -68.45 -0.25 -2.38 15 3 C 0.00 0.02 11.46 -17.73 -0.20 -0.19 15 4 C -0.42 -6.32 7.52 -17.05 -0.13 -6.45 15 5 S 1.99 42.91 5.45 -107.50 -0.59 42.32 15 6 O -0.89 -17.88 13.56 -58.38 -0.79 -18.67 15 7 O -0.97 -27.18 18.12 -58.38 -1.06 -28.24 15 8 N -1.00 -25.19 5.62 31.50 0.18 -25.01 15 9 C -0.27 -8.36 10.42 -15.06 -0.16 -8.51 15 10 H 0.09 3.15 8.05 -52.49 -0.42 2.73 15 11 C 0.01 0.32 5.50 -17.43 -0.10 0.22 15 12 N -0.93 -30.95 13.97 55.49 0.78 -30.17 15 13 Si 0.89 22.82 27.74 -169.99 -4.71 18.10 15 14 H -0.29 -7.30 7.11 56.52 0.40 -6.89 15 15 H -0.29 -7.53 7.11 56.52 0.40 -7.13 15 16 H -0.28 -6.37 6.52 56.52 0.37 -6.00 15 17 N -0.35 -3.93 6.98 31.16 0.22 -3.71 15 18 H 0.46 3.46 8.96 -190.40 -1.71 1.76 15 19 N -0.14 -1.53 13.15 60.35 0.79 -0.73 15 20 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 15 21 H 0.11 0.22 8.14 -51.92 -0.42 -0.20 15 22 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 15 23 H 0.20 2.27 8.06 -52.49 -0.42 1.85 15 24 H 0.41 5.55 9.03 67.38 0.61 6.16 15 25 H 0.35 8.19 5.89 -34.47 -0.20 7.98 15 26 H 0.26 8.02 8.31 -40.82 -0.34 7.68 15 LS Contribution 247.98 15.07 3.74 3.74 Total: -1.00 -46.93 247.98 -4.19 -51.12 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -2.58 Total: 7.58 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 0.10 Total: -13.95 kcal Atomic # 7 Polarization: -63.72 SS G_CDS: 1.71 Total: -62.01 kcal Atomic # 8 Polarization: -45.05 SS G_CDS: -1.85 Total: -46.90 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.71 Total: 18.10 kcal Atomic # 16 Polarization: 42.91 SS G_CDS: -0.59 Total: 42.32 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -46.93 -4.19 -51.12 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725613425.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.856 kcal (2) G-P(sol) polarization free energy of solvation -46.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds