Wall clock time and date at job start Mon Mar 30 2020 03:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.33778 * 125.55490 * 2 1 4 4 C 1.35356 * 106.49379 * 180.11150 * 3 2 1 5 5 S 1.76195 * 126.90979 * 179.90151 * 4 3 2 6 6 O 1.52204 * 109.46871 * 149.71110 * 5 4 3 7 7 O 1.42106 * 109.47039 * 29.71436 * 5 4 3 8 8 N 1.65597 * 109.47363 * 269.70930 * 5 4 3 9 9 C 1.36943 * 119.99912 * 179.72436 * 8 5 4 10 10 H 1.08002 * 119.99793 * 0.27628 * 9 8 5 11 11 C 1.38811 * 120.00012 * 180.27700 * 9 8 5 12 12 N 1.31611 * 120.00081 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99814 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47483 * 90.00178 * 13 11 9 15 15 H 1.48498 * 109.47011 * 210.00042 * 13 11 9 16 16 H 1.48502 * 109.47495 * 329.99664 * 13 11 9 17 17 N 1.35307 * 106.17511 * 359.64460 * 4 3 2 18 18 H 0.96997 * 125.87236 * 180.24839 * 17 4 3 19 19 N 1.28629 * 125.56153 * 179.70033 * 2 1 3 20 20 H 1.09003 * 109.47258 * 270.27135 * 1 2 3 21 21 H 1.09007 * 109.47143 * 30.27265 * 1 2 3 22 22 H 1.08998 * 109.46970 * 150.27438 * 1 2 3 23 23 H 1.07999 * 126.75535 * 359.97438 * 3 2 1 24 24 H 0.96699 * 113.99766 * 60.00390 * 6 5 4 25 25 H 0.97001 * 120.00224 * 0.02562 * 8 5 4 26 26 H 0.97008 * 120.00329 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2429 1.0884 0.0000 4 6 3.5222 0.6463 -0.0025 5 16 4.9824 1.6323 -0.0061 6 8 6.0978 0.8897 0.7156 7 8 4.7252 2.8621 0.6579 8 7 5.4410 1.9339 -1.5685 9 6 6.5538 2.6909 -1.8214 10 1 7.1348 3.0875 -1.0019 11 6 6.9350 2.9486 -3.1311 12 7 8.0047 3.6757 -3.3742 13 14 5.9296 2.2632 -4.5484 14 1 4.8759 3.2394 -4.9255 15 1 6.8180 2.0194 -5.7131 16 1 5.2956 0.9860 -4.1336 17 7 3.4541 -0.7050 0.0041 18 1 4.2105 -1.3122 0.0077 19 7 2.2131 -1.0464 0.0055 20 1 -0.3634 0.0049 1.0277 21 1 -0.3634 0.8876 -0.5181 22 1 -0.3633 -0.8924 -0.5096 23 1 1.9147 2.1173 -0.0004 24 1 6.3268 0.0393 0.3161 25 1 4.9190 1.5781 -2.3045 26 1 8.2714 3.8554 -4.2894 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725613425.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:39 Heat of formation + Delta-G solvation = 46.066281 kcal Electronic energy + Delta-G solvation = -14853.947943 eV Core-core repulsion = 12098.729218 eV Total energy + Delta-G solvation = -2755.218725 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 234.057 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.99854 -37.03104 -36.63164 -35.47111 -35.34015 -32.43622 -32.31892 -29.89727 -25.24862 -24.43323 -23.76725 -20.53071 -19.95091 -19.43620 -18.16952 -17.68880 -17.45211 -16.35776 -16.05550 -15.63940 -14.89678 -14.67638 -14.48284 -14.26286 -13.86597 -13.46993 -13.25694 -12.87223 -12.22013 -12.05756 -11.76621 -11.74796 -11.31434 -11.13133 -10.88808 -10.52982 -9.58206 -7.92257 -5.65739 -5.31154 -0.12259 0.89026 1.01446 1.39492 1.49831 1.58601 1.90795 2.61484 3.14424 3.46574 3.49765 3.64729 3.98513 4.31692 4.35424 4.42704 4.67901 4.88069 5.26390 5.66788 5.82180 6.19066 6.52955 6.81715 7.09160 7.65049 8.13847 9.32241 Molecular weight = 234.06amu Principal moments of inertia in cm(-1) A = 0.032579 B = 0.009115 C = 0.007968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.254258 B = 3071.069751 C = 3513.171083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.205 5.205 3 C -0.018 4.018 4 C -0.363 4.363 5 S 1.867 4.133 6 O -0.919 6.919 7 O -1.064 7.064 8 N -0.985 5.985 9 C -0.252 4.252 10 H 0.022 0.978 11 C -0.081 4.081 12 N -1.000 6.000 13 Si 0.974 3.026 14 H -0.283 1.283 15 H -0.297 1.297 16 H -0.225 1.225 17 N -0.288 5.288 18 H 0.483 0.517 19 N -0.065 5.065 20 H 0.127 0.873 21 H 0.135 0.865 22 H 0.130 0.870 23 H 0.216 0.784 24 H 0.425 0.575 25 H 0.357 0.643 26 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.638 -18.977 4.585 30.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.006 5.006 3 C -0.171 4.171 4 C -0.558 4.558 5 S 1.937 4.063 6 O -0.769 6.769 7 O -1.051 7.051 8 N -0.728 5.728 9 C -0.388 4.388 10 H 0.040 0.960 11 C -0.272 4.272 12 N -0.652 5.652 13 Si 0.799 3.201 14 H -0.210 1.210 15 H -0.223 1.223 16 H -0.148 1.148 17 N -0.024 5.024 18 H 0.337 0.663 19 N -0.042 5.042 20 H 0.145 0.855 21 H 0.154 0.846 22 H 0.149 0.851 23 H 0.232 0.768 24 H 0.285 0.715 25 H 0.185 0.815 26 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -23.830 -19.137 5.709 31.092 hybrid contribution 0.676 1.069 -1.381 1.873 sum -23.155 -18.068 4.328 29.687 Atomic orbital electron populations 1.23293 0.67262 1.09352 1.08395 1.47639 1.11508 1.03432 1.38017 1.23690 0.88490 0.96175 1.08777 1.41539 1.25175 0.89756 0.99375 1.76526 0.73950 0.82489 0.73291 1.85272 1.76365 1.42721 1.72564 1.92495 1.82855 1.52709 1.77058 1.54469 1.30892 1.61047 1.26371 1.19390 1.03373 1.24126 0.91867 0.95992 1.26353 0.99253 1.00460 1.01104 1.70051 1.29539 1.45940 1.19621 0.85124 0.77649 0.80107 0.77193 1.20960 1.22347 1.14838 1.44446 1.05476 1.08140 1.44385 0.66273 1.78001 0.92067 1.10382 1.23731 0.85513 0.84635 0.85145 0.76781 0.71529 0.81463 0.93798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.04 11.35 127.77 1.45 1.41 15 2 N -0.20 -2.31 3.69 -370.48 -1.37 -3.68 15 3 C -0.02 -0.36 11.46 83.73 0.96 0.60 15 4 C -0.36 -9.71 7.52 83.49 0.63 -9.08 15 5 S 1.87 85.49 5.45 -56.49 -0.31 85.18 15 6 O -0.92 -40.31 13.56 -126.85 -1.72 -42.03 15 7 O -1.06 -65.63 18.12 -126.85 -2.30 -67.93 15 8 N -0.99 -51.72 5.62 -54.26 -0.30 -52.02 15 9 C -0.25 -16.95 10.42 84.03 0.88 -16.07 15 10 H 0.02 1.72 8.05 -2.91 -0.02 1.70 15 11 C -0.08 -5.34 5.50 84.86 0.47 -4.88 15 12 N -1.00 -71.61 13.97 21.65 0.30 -71.31 15 13 Si 0.97 48.33 27.74 68.60 1.90 50.24 15 14 H -0.28 -13.75 7.11 99.48 0.71 -13.05 15 15 H -0.30 -14.62 7.11 99.48 0.71 -13.91 15 16 H -0.23 -9.19 6.52 99.48 0.65 -8.54 15 17 N -0.29 -4.58 6.98 -55.32 -0.39 -4.97 15 18 H 0.48 4.08 8.96 -219.96 -1.97 2.10 15 19 N -0.06 -0.83 13.15 37.02 0.49 -0.34 15 20 H 0.13 -0.52 8.14 -2.39 -0.02 -0.54 15 21 H 0.14 -0.56 8.14 -2.38 -0.02 -0.58 15 22 H 0.13 -0.60 8.14 -2.39 -0.02 -0.62 15 23 H 0.22 4.13 8.06 -2.91 -0.02 4.11 15 24 H 0.42 12.36 9.03 -87.93 -0.79 11.57 15 25 H 0.36 16.29 5.89 -96.74 -0.57 15.72 15 26 H 0.25 16.98 8.31 -92.70 -0.77 16.21 15 Total: -1.00 -119.26 247.98 -1.46 -120.72 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -2.15 Total: 14.18 kcal Atomic # 6 Polarization: -32.41 SS G_CDS: 4.38 Total: -28.03 kcal Atomic # 7 Polarization: -131.05 SS G_CDS: -1.27 Total: -132.32 kcal Atomic # 8 Polarization: -105.94 SS G_CDS: -4.02 Total: -109.96 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 1.90 Total: 50.24 kcal Atomic # 16 Polarization: 85.49 SS G_CDS: -0.31 Total: 85.18 kcal Total: -119.26 -1.46 -120.72 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725613425.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.784 kcal (2) G-P(sol) polarization free energy of solvation -119.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -120.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds