Wall clock time and date at job start Mon Mar 30 2020 03:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.33771 * 125.55628 * 2 1 4 4 C 1.35357 * 106.49776 * 180.02562 * 3 2 1 5 5 S 1.76199 * 126.91232 * 180.26666 * 4 3 2 6 6 O 1.52203 * 109.46778 * 269.69996 * 5 4 3 7 7 O 1.42101 * 109.47591 * 29.70097 * 5 4 3 8 8 N 1.65600 * 109.47123 * 149.70654 * 5 4 3 9 9 C 1.36934 * 119.99965 * 180.02562 * 8 5 4 10 10 H 1.08000 * 120.00241 * 359.97438 * 9 8 5 11 11 C 1.38817 * 120.00180 * 179.97438 * 9 8 5 12 12 N 1.31614 * 120.00113 * 179.97438 * 11 9 8 13 13 Si 1.86796 * 119.99783 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47002 * 89.99969 * 13 11 9 15 15 H 1.48503 * 109.47241 * 210.00128 * 13 11 9 16 16 H 1.48507 * 109.47341 * 330.00292 * 13 11 9 17 17 N 1.35315 * 106.17188 * 359.97438 * 4 3 2 18 18 H 0.97006 * 125.86453 * 179.97438 * 17 4 3 19 19 N 1.28636 * 125.55812 * 180.02562 * 2 1 3 20 20 H 1.09004 * 109.47042 * 269.98282 * 1 2 3 21 21 H 1.08995 * 109.47577 * 29.98156 * 1 2 3 22 22 H 1.09000 * 109.47235 * 149.98579 * 1 2 3 23 23 H 1.08004 * 126.75301 * 0.03239 * 3 2 1 24 24 H 0.96696 * 114.00505 * 300.00191 * 6 5 4 25 25 H 0.97005 * 119.99857 * 359.97438 * 8 5 4 26 26 H 0.96997 * 120.00076 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2428 1.0883 0.0000 4 6 3.5222 0.6463 -0.0006 5 16 4.9825 1.6323 0.0057 6 8 5.4087 1.9166 -1.4275 7 8 4.7231 2.8588 0.6749 8 7 6.1934 0.8203 0.7909 9 6 7.4298 1.3943 0.9217 10 1 7.6153 2.3764 0.5124 11 6 8.4448 0.7139 1.5803 12 7 9.6332 1.2654 1.7056 13 14 8.1238 -0.9844 2.2889 14 1 8.4356 -2.0146 1.2657 15 1 8.9843 -1.1942 3.4809 16 1 6.6963 -1.0946 2.6832 17 7 3.4541 -0.7051 -0.0003 18 1 4.2106 -1.3123 -0.0010 19 7 2.2130 -1.0465 -0.0005 20 1 -0.3633 -0.0003 1.0277 21 1 -0.3634 0.8901 -0.5135 22 1 -0.3634 -0.8898 -0.5140 23 1 1.9146 2.1172 0.0005 24 1 5.6024 1.1232 -1.9450 25 1 6.0267 -0.0616 1.1588 26 1 10.3423 0.7901 2.1661 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725613426.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:42 Heat of formation + Delta-G solvation = 94.363376 kcal Electronic energy + Delta-G solvation = -14852.015562 eV Core-core repulsion = 12098.891155 eV Total energy + Delta-G solvation = -2753.124406 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 234.057 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.57933 -35.68981 -35.17052 -33.79315 -33.66369 -30.99185 -30.52770 -29.10554 -23.49035 -23.20649 -22.51233 -19.14364 -18.52291 -17.52983 -16.95381 -16.56958 -16.16228 -15.02611 -14.24555 -14.12409 -13.93591 -13.62977 -13.34613 -12.69979 -12.38020 -12.10752 -11.62454 -10.95941 -10.82849 -10.53872 -10.31268 -9.77582 -9.52464 -9.41678 -9.31893 -9.27884 -7.67995 -5.72340 -4.14910 -3.20536 0.93959 1.94418 2.05624 3.24103 3.36995 3.40494 3.48390 4.19950 4.52514 4.57352 4.62681 4.85128 4.91862 5.04094 5.32328 5.55390 5.69249 6.27954 6.42667 7.05961 7.66335 7.90192 8.05744 8.41530 9.00972 9.77401 9.89149 11.45430 Molecular weight = 234.06amu Principal moments of inertia in cm(-1) A = 0.037428 B = 0.008873 C = 0.007651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.915950 B = 3154.957457 C = 3658.630259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.223 5.223 3 C 0.007 3.993 4 C -0.415 4.415 5 S 1.983 4.017 6 O -0.940 6.940 7 O -0.978 6.978 8 N -0.970 5.970 9 C -0.270 4.270 10 H 0.095 0.905 11 C 0.016 3.984 12 N -0.928 5.928 13 Si 0.886 3.114 14 H -0.281 1.281 15 H -0.291 1.291 16 H -0.273 1.273 17 N -0.344 5.344 18 H 0.461 0.539 19 N -0.137 5.137 20 H 0.099 0.901 21 H 0.108 0.892 22 H 0.103 0.897 23 H 0.198 0.802 24 H 0.403 0.597 25 H 0.359 0.641 26 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.135 -9.128 -5.640 23.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.018 5.018 3 C -0.155 4.155 4 C -0.613 4.613 5 S 2.065 3.935 6 O -0.787 6.787 7 O -0.962 6.962 8 N -0.718 5.718 9 C -0.402 4.402 10 H 0.113 0.887 11 C -0.182 4.182 12 N -0.574 5.574 13 Si 0.715 3.285 14 H -0.207 1.207 15 H -0.217 1.217 16 H -0.199 1.199 17 N -0.084 5.084 18 H 0.309 0.691 19 N -0.113 5.113 20 H 0.117 0.883 21 H 0.126 0.874 22 H 0.122 0.878 23 H 0.215 0.785 24 H 0.260 0.740 25 H 0.188 0.812 26 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -21.522 -8.562 -5.669 23.846 hybrid contribution 0.571 -0.980 0.588 1.278 sum -20.951 -9.542 -5.081 23.575 Atomic orbital electron populations 1.22493 0.72183 1.06374 1.05731 1.47100 1.09070 1.05176 1.40471 1.23178 0.88603 0.94533 1.09164 1.39092 1.21981 0.90454 1.09812 1.62221 0.73744 0.81869 0.75648 1.85621 1.89665 1.50372 1.53053 1.92778 1.82602 1.48766 1.72057 1.51683 1.21610 1.25315 1.73169 1.19180 0.86159 1.02520 1.32355 0.88747 1.25080 0.95684 0.98282 0.99191 1.69763 1.02552 1.38193 1.46905 0.86515 0.77581 0.85348 0.79013 1.20717 1.21729 1.19875 1.43391 1.04303 1.07627 1.53098 0.69051 1.77931 0.91746 1.08649 1.33017 0.88300 0.87391 0.87813 0.78486 0.73980 0.81181 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.26 11.35 59.84 0.68 0.94 15 2 N -0.22 -2.12 3.69 -68.46 -0.25 -2.37 15 3 C 0.01 0.09 11.45 -17.73 -0.20 -0.12 15 4 C -0.41 -6.38 7.52 -17.04 -0.13 -6.50 15 5 S 1.98 43.91 5.45 -107.50 -0.59 43.33 15 6 O -0.94 -20.46 13.56 -58.38 -0.79 -21.25 15 7 O -0.98 -28.08 18.12 -58.38 -1.06 -29.14 15 8 N -0.97 -23.91 5.62 31.50 0.18 -23.74 15 9 C -0.27 -8.25 10.42 -15.06 -0.16 -8.41 15 10 H 0.09 3.25 8.05 -52.49 -0.42 2.83 15 11 C 0.02 0.49 5.50 -17.43 -0.10 0.39 15 12 N -0.93 -30.33 13.97 55.49 0.78 -29.56 15 13 Si 0.89 21.83 27.73 -169.99 -4.71 17.11 15 14 H -0.28 -6.53 7.11 56.52 0.40 -6.12 15 15 H -0.29 -7.34 7.11 56.52 0.40 -6.94 15 16 H -0.27 -6.14 6.52 56.52 0.37 -5.77 15 17 N -0.34 -4.20 6.98 31.16 0.22 -3.98 15 18 H 0.46 4.47 8.96 -190.40 -1.71 2.76 15 19 N -0.14 -1.51 13.15 60.35 0.79 -0.72 15 20 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 15 21 H 0.11 0.15 8.13 -51.93 -0.42 -0.28 15 22 H 0.10 0.22 8.14 -51.93 -0.42 -0.21 15 23 H 0.20 2.14 8.06 -52.48 -0.42 1.71 15 24 H 0.40 6.43 9.03 67.38 0.61 7.04 15 25 H 0.36 7.79 5.89 -34.47 -0.20 7.59 15 26 H 0.26 7.94 8.31 -40.82 -0.34 7.60 15 LS Contribution 247.98 15.07 3.74 3.74 Total: -1.00 -46.06 247.98 -4.19 -50.25 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -2.58 Total: 10.03 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: 0.10 Total: -13.70 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: 1.71 Total: -60.37 kcal Atomic # 8 Polarization: -48.54 SS G_CDS: -1.85 Total: -50.39 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.71 Total: 17.11 kcal Atomic # 16 Polarization: 43.91 SS G_CDS: -0.59 Total: 43.33 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -46.06 -4.19 -50.25 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725613426.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.613 kcal (2) G-P(sol) polarization free energy of solvation -46.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds