Wall clock time and date at job start Mon Mar 30 2020 03:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.33771 * 125.55628 * 2 1 4 4 C 1.35357 * 106.49776 * 180.02562 * 3 2 1 5 5 S 1.76199 * 126.91232 * 180.26666 * 4 3 2 6 6 O 1.52203 * 109.46778 * 269.69996 * 5 4 3 7 7 O 1.42101 * 109.47591 * 29.70097 * 5 4 3 8 8 N 1.65600 * 109.47123 * 149.70654 * 5 4 3 9 9 C 1.36934 * 119.99965 * 180.02562 * 8 5 4 10 10 H 1.08000 * 120.00241 * 359.97438 * 9 8 5 11 11 C 1.38817 * 120.00180 * 179.97438 * 9 8 5 12 12 N 1.31614 * 120.00113 * 179.97438 * 11 9 8 13 13 Si 1.86796 * 119.99783 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47002 * 89.99969 * 13 11 9 15 15 H 1.48503 * 109.47241 * 210.00128 * 13 11 9 16 16 H 1.48507 * 109.47341 * 330.00292 * 13 11 9 17 17 N 1.35315 * 106.17188 * 359.97438 * 4 3 2 18 18 H 0.97006 * 125.86453 * 179.97438 * 17 4 3 19 19 N 1.28636 * 125.55812 * 180.02562 * 2 1 3 20 20 H 1.09004 * 109.47042 * 269.98282 * 1 2 3 21 21 H 1.08995 * 109.47577 * 29.98156 * 1 2 3 22 22 H 1.09000 * 109.47235 * 149.98579 * 1 2 3 23 23 H 1.08004 * 126.75301 * 0.03239 * 3 2 1 24 24 H 0.96696 * 114.00505 * 300.00191 * 6 5 4 25 25 H 0.97005 * 119.99857 * 359.97438 * 8 5 4 26 26 H 0.96997 * 120.00076 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2428 1.0883 0.0000 4 6 3.5222 0.6463 -0.0006 5 16 4.9825 1.6323 0.0057 6 8 5.4087 1.9166 -1.4275 7 8 4.7231 2.8588 0.6749 8 7 6.1934 0.8203 0.7909 9 6 7.4298 1.3943 0.9217 10 1 7.6153 2.3764 0.5124 11 6 8.4448 0.7139 1.5803 12 7 9.6332 1.2654 1.7056 13 14 8.1238 -0.9844 2.2889 14 1 8.4356 -2.0146 1.2657 15 1 8.9843 -1.1942 3.4809 16 1 6.6963 -1.0946 2.6832 17 7 3.4541 -0.7051 -0.0003 18 1 4.2106 -1.3123 -0.0010 19 7 2.2130 -1.0465 -0.0005 20 1 -0.3633 -0.0003 1.0277 21 1 -0.3634 0.8901 -0.5135 22 1 -0.3634 -0.8898 -0.5140 23 1 1.9146 2.1172 0.0005 24 1 5.6024 1.1232 -1.9450 25 1 6.0267 -0.0616 1.1588 26 1 10.3423 0.7901 2.1661 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725613426.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:41 Heat of formation + Delta-G solvation = 47.749739 kcal Electronic energy + Delta-G solvation = -14854.036881 eV Core-core repulsion = 12098.891155 eV Total energy + Delta-G solvation = -2755.145725 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 234.057 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.18700 -36.97304 -36.41139 -35.49323 -35.14455 -32.55332 -32.37956 -29.97195 -25.29766 -24.52905 -23.82030 -20.54768 -19.93018 -19.17711 -18.26418 -17.75963 -17.51170 -16.29757 -16.01424 -15.44200 -15.05611 -14.65717 -14.50595 -14.31716 -13.82859 -13.42040 -13.26069 -12.78426 -12.16150 -11.86915 -11.85720 -11.72310 -11.16752 -11.07103 -10.80800 -10.61410 -9.57819 -7.90171 -5.56304 -5.30244 -0.23654 0.82469 0.88690 1.41766 1.55123 1.62668 1.78552 2.64708 3.16124 3.35900 3.54538 3.65723 3.89996 4.24000 4.31404 4.45186 4.65793 4.91424 5.13588 5.58053 5.75493 6.20550 6.37948 6.95347 7.14726 7.66007 8.15279 9.34405 Molecular weight = 234.06amu Principal moments of inertia in cm(-1) A = 0.037428 B = 0.008873 C = 0.007651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.915950 B = 3154.957457 C = 3658.630259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.208 5.208 3 C -0.008 4.008 4 C -0.332 4.332 5 S 1.817 4.183 6 O -0.946 6.946 7 O -1.078 7.078 8 N -0.962 5.962 9 C -0.251 4.251 10 H 0.017 0.983 11 C -0.084 4.084 12 N -1.002 6.002 13 Si 0.978 3.022 14 H -0.252 1.252 15 H -0.306 1.306 16 H -0.235 1.235 17 N -0.281 5.281 18 H 0.485 0.515 19 N -0.052 5.052 20 H 0.126 0.874 21 H 0.140 0.860 22 H 0.132 0.868 23 H 0.222 0.778 24 H 0.414 0.586 25 H 0.359 0.641 26 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.723 -14.520 -6.127 31.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.010 5.010 3 C -0.157 4.157 4 C -0.523 4.523 5 S 1.877 4.123 6 O -0.797 6.797 7 O -1.066 7.066 8 N -0.706 5.706 9 C -0.386 4.386 10 H 0.036 0.964 11 C -0.274 4.274 12 N -0.653 5.653 13 Si 0.801 3.199 14 H -0.176 1.176 15 H -0.233 1.233 16 H -0.159 1.159 17 N -0.013 5.013 18 H 0.340 0.660 19 N -0.029 5.029 20 H 0.144 0.856 21 H 0.158 0.842 22 H 0.151 0.849 23 H 0.238 0.762 24 H 0.273 0.727 25 H 0.188 0.812 26 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -28.439 -14.194 -6.192 32.382 hybrid contribution 1.346 0.260 0.776 1.575 sum -27.093 -13.934 -5.416 30.943 Atomic orbital electron populations 1.23365 0.66910 1.09659 1.08504 1.47893 1.11711 1.03342 1.38078 1.24056 0.88281 0.96533 1.06877 1.42620 1.25225 0.89470 0.94942 1.82388 0.74009 0.82810 0.73100 1.85401 1.89360 1.50733 1.54233 1.92389 1.83814 1.56769 1.73583 1.53171 1.19533 1.25349 1.72592 1.19263 0.90477 0.99462 1.29410 0.96445 1.26426 0.95125 1.04869 1.00993 1.70062 1.04253 1.41127 1.49844 0.85095 0.78971 0.78187 0.77629 1.17649 1.23336 1.15895 1.44777 1.05683 1.08866 1.41978 0.66029 1.78102 0.91991 1.10593 1.22177 0.85588 0.84185 0.84920 0.76193 0.72726 0.81230 0.93745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 81. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.13 11.35 127.77 1.45 1.32 15 2 N -0.21 -2.07 3.69 -370.50 -1.37 -3.44 15 3 C -0.01 -0.16 11.45 83.73 0.96 0.80 15 4 C -0.33 -8.93 7.52 83.49 0.63 -8.30 15 5 S 1.82 85.82 5.45 -56.49 -0.31 85.51 15 6 O -0.95 -44.94 13.56 -126.85 -1.72 -46.66 15 7 O -1.08 -68.37 18.12 -126.85 -2.30 -70.67 15 8 N -0.96 -50.25 5.62 -54.26 -0.30 -50.56 15 9 C -0.25 -16.95 10.42 84.04 0.88 -16.07 15 10 H 0.02 1.39 8.05 -2.91 -0.02 1.36 15 11 C -0.08 -5.49 5.50 84.86 0.47 -5.03 15 12 N -1.00 -71.71 13.97 21.65 0.30 -71.40 15 13 Si 0.98 46.78 27.73 68.60 1.90 48.68 15 14 H -0.25 -10.70 7.11 99.48 0.71 -9.99 15 15 H -0.31 -15.09 7.11 99.48 0.71 -14.39 15 16 H -0.24 -9.51 6.52 99.48 0.65 -8.87 15 17 N -0.28 -4.73 6.98 -55.32 -0.39 -5.12 15 18 H 0.49 5.61 8.96 -219.95 -1.97 3.64 15 19 N -0.05 -0.64 13.15 37.02 0.49 -0.16 15 20 H 0.13 -0.63 8.14 -2.38 -0.02 -0.65 15 21 H 0.14 -0.90 8.13 -2.39 -0.02 -0.92 15 22 H 0.13 -0.84 8.14 -2.39 -0.02 -0.86 15 23 H 0.22 3.79 8.06 -2.91 -0.02 3.76 15 24 H 0.41 14.30 9.03 -87.93 -0.79 13.50 15 25 H 0.36 15.50 5.89 -96.74 -0.57 14.93 15 26 H 0.25 16.98 8.31 -92.71 -0.77 16.20 15 Total: -1.00 -121.91 247.98 -1.46 -123.37 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -2.15 Total: 17.72 kcal Atomic # 6 Polarization: -31.66 SS G_CDS: 4.38 Total: -27.28 kcal Atomic # 7 Polarization: -129.41 SS G_CDS: -1.27 Total: -130.68 kcal Atomic # 8 Polarization: -113.31 SS G_CDS: -4.02 Total: -117.33 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 1.90 Total: 48.68 kcal Atomic # 16 Polarization: 85.82 SS G_CDS: -0.31 Total: 85.51 kcal Total: -121.91 -1.46 -123.37 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725613426.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.117 kcal (2) G-P(sol) polarization free energy of solvation -121.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -123.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds