Wall clock time and date at job start Mon Mar 30 2020 03:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00190 * 2 1 4 4 H 1.48499 * 109.47377 * 270.00127 * 3 2 1 5 5 H 1.48505 * 109.47179 * 30.00423 * 3 2 1 6 6 H 1.48504 * 109.47141 * 149.99766 * 3 2 1 7 7 C 1.37878 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99871 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00073 * 359.97438 * 7 2 1 10 10 H 1.09006 * 110.05599 * 60.04130 * 9 7 2 11 11 N 1.46838 * 110.07661 * 298.54944 * 9 7 2 12 12 C 1.30164 * 107.45700 * 240.76907 * 11 9 7 13 13 C 1.46949 * 132.83553 * 179.97438 * 12 11 9 14 14 C 1.34802 * 119.56041 * 180.25342 * 13 12 11 15 15 C 1.40624 * 122.62807 * 359.44075 * 14 13 12 16 16 N 1.48003 * 118.69452 * 180.28143 * 15 14 13 17 17 O 1.21796 * 120.00109 * 180.30061 * 16 15 14 18 18 O 1.21804 * 119.99388 * 0.29860 * 16 15 14 19 19 C 1.34811 * 122.61702 * 0.59865 * 15 14 13 20 20 C 1.46935 * 119.56590 * 359.70597 * 19 15 14 21 21 N 1.30173 * 132.83623 * 180.02562 * 20 19 15 22 22 H 0.97007 * 119.99795 * 359.97438 * 1 2 3 23 23 H 1.08002 * 120.21563 * 359.97115 * 13 12 11 24 24 H 1.08005 * 118.68482 * 179.72170 * 14 13 12 25 25 H 1.08005 * 120.21393 * 179.69049 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6209 -2.5670 -0.8874 11 7 0.4286 -2.6064 1.2112 12 6 0.8357 -3.6538 1.8680 13 6 0.4099 -4.2673 3.1336 14 6 1.0358 -5.3749 3.5794 15 6 2.0866 -5.9879 2.8741 16 7 2.7080 -7.2055 3.4413 17 8 3.6234 -7.7526 2.8530 18 8 2.3038 -7.6604 4.4964 19 6 2.5547 -5.5070 1.7049 20 6 1.9523 -4.2990 1.1245 21 7 2.1922 -3.6254 0.0368 22 1 -0.4850 0.8401 0.0004 23 1 -0.3961 -3.8311 3.7049 24 1 0.7143 -5.8115 4.5135 25 1 3.3674 -6.0064 1.1982 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725615393.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:24 Heat of formation + Delta-G solvation = 89.891687 kcal Electronic energy + Delta-G solvation = -15169.290902 eV Core-core repulsion = 12345.954549 eV Total energy + Delta-G solvation = -2823.336354 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.09615 -40.11434 -36.64607 -36.50125 -33.07411 -32.42801 -29.96853 -29.05235 -26.68172 -24.67670 -22.42253 -21.23937 -20.56289 -18.69516 -18.47747 -17.46273 -17.14022 -16.18074 -15.70918 -14.82986 -14.22924 -14.06815 -13.61772 -12.90358 -12.49748 -12.19776 -11.49407 -11.41436 -11.16898 -11.15238 -11.07162 -10.91533 -10.59591 -10.44355 -9.82062 -9.62748 -9.47335 -8.96173 -8.20747 -6.51850 -4.68617 -0.33006 0.83738 1.42519 2.11996 2.31233 3.06252 3.12812 3.16833 3.78138 3.98045 4.10608 4.37015 4.50154 4.65204 4.86642 5.02687 5.39951 5.68448 5.96459 6.02739 6.19817 6.41093 6.55046 6.70784 6.96696 7.39958 7.52102 7.72461 8.07747 8.44634 8.99741 10.54325 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.050826 B = 0.006053 C = 0.005819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.769608 B = 4624.364792 C = 4810.383741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.075 3.925 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.509 4.509 8 H 0.082 0.918 9 C 0.271 3.729 10 H 0.126 0.874 11 N -0.346 5.346 12 C 0.047 3.953 13 C -0.011 4.011 14 C -0.131 4.131 15 C -0.014 4.014 16 N 0.029 4.971 17 O -0.172 6.172 18 O -0.157 6.157 19 C 0.043 3.957 20 C 0.080 3.920 21 N -0.399 5.399 22 H 0.272 0.728 23 H 0.150 0.850 24 H 0.151 0.849 25 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.964 -7.445 5.069 9.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.134 4.134 3 Si 0.744 3.256 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.549 4.549 8 H 0.100 0.900 9 C 0.074 3.926 10 H 0.142 0.858 11 N -0.064 5.064 12 C -0.137 4.137 13 C -0.031 4.031 14 C -0.154 4.154 15 C -0.101 4.101 16 N 0.547 4.453 17 O -0.384 6.384 18 O -0.374 6.374 19 C 0.022 3.978 20 C -0.104 4.104 21 N -0.117 5.117 22 H 0.082 0.918 23 H 0.168 0.832 24 H 0.169 0.831 25 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.374 -5.746 3.736 6.864 hybrid contribution 0.564 0.169 0.495 0.769 sum 0.938 -5.577 4.231 7.063 Atomic orbital electron populations 1.70024 1.05996 1.27983 1.44006 1.25125 0.95262 0.99870 0.93158 0.86147 0.79614 0.81048 0.78740 1.19784 1.20490 1.19381 1.20488 0.92931 0.84879 1.56601 0.90039 1.22685 0.86855 0.91126 0.91970 0.85847 1.75316 1.18096 1.07679 1.05281 1.23740 0.97283 0.95266 0.97403 1.21472 0.97445 0.92406 0.91800 1.20054 0.96010 0.97601 1.01777 1.20610 1.01461 0.90129 0.97895 1.43727 0.99612 1.01745 1.00192 1.94534 1.21086 1.61135 1.61672 1.94507 1.65831 1.66918 1.10141 1.21605 0.94945 0.90549 0.90698 1.23072 0.97151 0.95193 0.94956 1.74767 1.18700 1.03761 1.14501 0.91845 0.83230 0.83123 0.82034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.70 12.86 55.43 0.71 -21.98 15 2 C 0.08 1.95 5.40 -17.82 -0.10 1.85 15 3 Si 0.92 19.90 29.54 -169.99 -5.02 14.87 15 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 15 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 7 C -0.51 -13.40 9.08 -34.44 -0.31 -13.71 15 8 H 0.08 2.15 7.81 -52.49 -0.41 1.74 15 9 C 0.27 6.70 4.05 -128.07 -0.52 6.18 15 10 H 0.13 3.20 8.14 -51.93 -0.42 2.78 15 11 N -0.35 -8.26 10.92 -52.91 -0.58 -8.84 15 12 C 0.05 0.93 7.54 -80.65 -0.61 0.33 15 13 C -0.01 -0.17 10.29 -37.27 -0.38 -0.55 15 14 C -0.13 -1.75 9.36 -39.90 -0.37 -2.13 15 15 C -0.01 -0.21 6.79 -80.27 -0.55 -0.75 15 16 N 0.03 0.44 4.45 33.80 0.15 0.59 15 17 O -0.17 -2.67 18.27 -29.46 -0.54 -3.20 15 18 O -0.16 -2.36 18.31 -29.46 -0.54 -2.90 15 19 C 0.04 0.67 9.76 -37.28 -0.36 0.31 15 20 C 0.08 1.56 7.54 -80.66 -0.61 0.95 15 21 N -0.40 -8.85 11.48 -52.92 -0.61 -9.46 15 22 H 0.27 6.83 8.31 -40.82 -0.34 6.49 15 23 H 0.15 1.84 8.06 -52.49 -0.42 1.42 15 24 H 0.15 1.64 7.47 -52.48 -0.39 1.24 15 25 H 0.16 2.17 7.45 -52.48 -0.39 1.78 15 LS Contribution 244.21 15.07 3.68 3.68 Total: -1.00 -27.95 244.21 -7.72 -35.67 By element: Atomic # 1 Polarization: 0.27 SS G_CDS: -1.17 Total: -0.91 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -3.81 Total: -7.52 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: -0.32 Total: -39.69 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -1.08 Total: -6.10 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -27.95 -7.72 -35.67 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725615393.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.562 kcal (2) G-P(sol) polarization free energy of solvation -27.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds