Wall clock time and date at job start Mon Mar 30 2020 03:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00190 * 2 1 4 4 H 1.48499 * 109.47377 * 270.00127 * 3 2 1 5 5 H 1.48505 * 109.47179 * 30.00423 * 3 2 1 6 6 H 1.48504 * 109.47141 * 149.99766 * 3 2 1 7 7 C 1.37878 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99871 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00073 * 359.97438 * 7 2 1 10 10 H 1.09006 * 110.05599 * 60.04130 * 9 7 2 11 11 N 1.46838 * 110.07661 * 298.54944 * 9 7 2 12 12 C 1.30164 * 107.45700 * 240.76907 * 11 9 7 13 13 C 1.46949 * 132.83553 * 179.97438 * 12 11 9 14 14 C 1.34802 * 119.56041 * 180.25342 * 13 12 11 15 15 C 1.40624 * 122.62807 * 359.44075 * 14 13 12 16 16 N 1.48003 * 118.69452 * 180.28143 * 15 14 13 17 17 O 1.21796 * 120.00109 * 180.30061 * 16 15 14 18 18 O 1.21804 * 119.99388 * 0.29860 * 16 15 14 19 19 C 1.34811 * 122.61702 * 0.59865 * 15 14 13 20 20 C 1.46935 * 119.56590 * 359.70597 * 19 15 14 21 21 N 1.30173 * 132.83623 * 180.02562 * 20 19 15 22 22 H 0.97007 * 119.99795 * 359.97438 * 1 2 3 23 23 H 1.08002 * 120.21563 * 359.97115 * 13 12 11 24 24 H 1.08005 * 118.68482 * 179.72170 * 14 13 12 25 25 H 1.08005 * 120.21393 * 179.69049 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6209 -2.5670 -0.8874 11 7 0.4286 -2.6064 1.2112 12 6 0.8357 -3.6538 1.8680 13 6 0.4099 -4.2673 3.1336 14 6 1.0358 -5.3749 3.5794 15 6 2.0866 -5.9879 2.8741 16 7 2.7080 -7.2055 3.4413 17 8 3.6234 -7.7526 2.8530 18 8 2.3038 -7.6604 4.4964 19 6 2.5547 -5.5070 1.7049 20 6 1.9523 -4.2990 1.1245 21 7 2.1922 -3.6254 0.0368 22 1 -0.4850 0.8401 0.0004 23 1 -0.3961 -3.8311 3.7049 24 1 0.7143 -5.8115 4.5135 25 1 3.3674 -6.0064 1.1982 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725615393.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:24 Heat of formation + Delta-G solvation = 69.733389 kcal Electronic energy + Delta-G solvation = -15170.165031 eV Core-core repulsion = 12345.954549 eV Total energy + Delta-G solvation = -2824.210483 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.32265 -41.70835 -38.01780 -37.72082 -34.97599 -33.91788 -31.41348 -30.65100 -28.28825 -26.18835 -23.95361 -22.59425 -22.11750 -20.01190 -19.75426 -19.02985 -18.66331 -17.61459 -17.25503 -16.61759 -15.88545 -15.30373 -15.03041 -14.53868 -14.02264 -13.52243 -13.14399 -12.87762 -12.75099 -12.70831 -12.38988 -12.27901 -12.22949 -12.04521 -11.42423 -11.34222 -11.19247 -10.87129 -9.62592 -8.44919 -6.69995 -1.67563 -0.45243 0.15697 0.77520 0.84571 1.34976 1.35666 1.47158 2.23049 2.34092 2.56570 2.79274 3.04125 3.14876 3.35729 3.69495 4.21322 4.28398 4.55743 4.69325 4.77069 4.98721 5.11854 5.27342 5.31376 5.43181 5.74537 6.26622 6.49036 6.62859 7.03497 8.62319 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.050826 B = 0.006053 C = 0.005819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.769608 B = 4624.364792 C = 4810.383741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.033 3.967 3 Si 0.983 3.017 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.536 4.536 8 H 0.069 0.931 9 C 0.269 3.731 10 H 0.092 0.908 11 N -0.398 5.398 12 C 0.057 3.943 13 C -0.021 4.021 14 C -0.103 4.103 15 C 0.000 4.000 16 N 0.028 4.972 17 O -0.183 6.183 18 O -0.135 6.135 19 C 0.037 3.963 20 C 0.091 3.909 21 N -0.428 5.428 22 H 0.274 0.726 23 H 0.181 0.819 24 H 0.190 0.810 25 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.316 -8.667 7.302 11.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.173 4.173 3 Si 0.806 3.194 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.576 4.576 8 H 0.087 0.913 9 C 0.072 3.928 10 H 0.109 0.891 11 N -0.114 5.114 12 C -0.128 4.128 13 C -0.041 4.041 14 C -0.126 4.126 15 C -0.086 4.086 16 N 0.547 4.453 17 O -0.393 6.393 18 O -0.358 6.358 19 C 0.017 3.983 20 C -0.094 4.094 21 N -0.146 5.146 22 H 0.083 0.917 23 H 0.198 0.802 24 H 0.208 0.792 25 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 0.754 -6.957 5.907 9.158 hybrid contribution 0.469 0.251 -0.027 0.532 sum 1.222 -6.707 5.880 9.003 Atomic orbital electron populations 1.70126 1.07338 1.28814 1.44945 1.25942 0.96020 1.02959 0.92397 0.85181 0.78202 0.76957 0.79099 1.18832 1.19703 1.19368 1.20645 0.92693 0.86758 1.57479 0.91299 1.22325 0.87013 0.91675 0.91789 0.89135 1.75210 1.20020 1.10386 1.05781 1.24552 0.96041 0.93730 0.98449 1.21706 0.99129 0.93078 0.90172 1.20449 0.93944 0.95967 1.02214 1.20772 1.00925 0.89649 0.97264 1.43700 0.99651 1.01665 1.00240 1.94566 1.21424 1.61345 1.61915 1.94511 1.65229 1.66414 1.09660 1.21575 0.95874 0.89443 0.91457 1.23573 0.96450 0.95548 0.93861 1.74716 1.19301 1.04165 1.16389 0.91663 0.80200 0.79245 0.80088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.72 12.86 21.45 0.28 -48.44 15 2 C 0.03 1.76 5.40 84.66 0.46 2.22 15 3 Si 0.98 41.54 29.54 68.60 2.03 43.56 15 4 H -0.26 -10.65 7.11 99.48 0.71 -9.94 15 5 H -0.27 -11.06 7.11 99.48 0.71 -10.35 15 6 H -0.27 -11.23 7.11 99.48 0.71 -10.52 15 7 C -0.54 -29.54 9.08 25.60 0.23 -29.31 15 8 H 0.07 3.81 7.81 -2.91 -0.02 3.79 15 9 C 0.27 14.04 4.05 128.57 0.52 14.56 15 10 H 0.09 5.12 8.14 -2.38 -0.02 5.10 15 11 N -0.40 -19.51 10.92 -321.31 -3.51 -23.02 15 12 C 0.06 2.25 7.54 44.52 0.34 2.58 15 13 C -0.02 -0.56 10.29 23.76 0.24 -0.32 15 14 C -0.10 -2.27 9.36 22.06 0.21 -2.06 15 15 C 0.00 0.01 6.79 36.17 0.25 0.26 15 16 N 0.03 0.72 4.45 -46.96 -0.21 0.51 15 17 O -0.18 -5.11 18.27 18.89 0.35 -4.76 15 18 O -0.14 -3.42 18.31 18.88 0.35 -3.08 15 19 C 0.04 1.07 9.76 23.76 0.23 1.30 15 20 C 0.09 3.50 7.54 44.51 0.34 3.83 15 21 N -0.43 -19.63 11.48 -321.33 -3.69 -23.32 15 22 H 0.27 14.15 8.31 -92.70 -0.77 13.38 15 23 H 0.18 3.72 8.06 -2.91 -0.02 3.70 15 24 H 0.19 2.86 7.47 -2.91 -0.02 2.84 15 25 H 0.18 4.46 7.45 -2.91 -0.02 4.44 15 Total: -1.00 -62.67 244.21 -0.36 -63.04 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: 1.24 Total: 2.44 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: 2.81 Total: -6.93 kcal Atomic # 7 Polarization: -87.13 SS G_CDS: -7.13 Total: -94.27 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.69 Total: -7.84 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.56 kcal Total: -62.67 -0.36 -63.04 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725615393.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.770 kcal (2) G-P(sol) polarization free energy of solvation -62.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds