Wall clock time and date at job start Mon Mar 30 2020 03:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 119.99649 * 2 1 4 4 H 1.48497 * 109.46894 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46792 * 300.00059 * 3 2 1 6 6 H 1.48498 * 109.46970 * 60.00130 * 3 2 1 7 7 C 1.37871 * 120.00589 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00363 * 179.97438 * 7 2 1 9 9 S 1.76197 * 119.99788 * 359.97438 * 7 2 1 10 10 O 1.42109 * 106.40305 * 66.46354 * 9 7 2 11 11 O 1.42097 * 106.40569 * 293.54316 * 9 7 2 12 12 N 1.65607 * 107.21960 * 180.02562 * 9 7 2 13 13 C 1.47013 * 125.64867 * 274.58621 * 12 9 7 14 14 C 1.54321 * 107.27112 * 178.97243 * 13 12 9 15 15 C 1.55155 * 102.94396 * 337.81172 * 14 13 12 16 16 C 1.47419 * 125.64304 * 94.62864 * 12 9 7 17 17 H 1.08998 * 110.37065 * 85.25942 * 16 12 9 18 18 C 1.50697 * 110.37333 * 322.92981 * 16 12 9 19 19 O 1.20769 * 119.99600 * 354.64329 * 18 16 12 20 20 H 0.96997 * 120.00364 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.88552 * 298.39722 * 13 12 9 22 22 H 1.09010 * 109.88521 * 59.55843 * 13 12 9 23 23 H 1.09008 * 110.71575 * 96.17550 * 14 13 12 24 24 H 1.09000 * 110.72227 * 219.44127 * 14 13 12 25 25 H 1.08999 * 111.00252 * 277.42778 * 15 14 13 26 26 H 1.08998 * 111.03826 * 153.58711 * 15 14 13 27 27 H 1.08000 * 120.00455 * 174.64635 * 18 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 16 1.1237 -2.7199 -0.0005 10 8 0.4512 -2.7950 -1.2501 11 8 0.4520 -2.7956 1.2494 12 7 2.2486 -3.9353 -0.0005 13 6 2.9007 -4.4993 -1.1913 14 6 3.8861 -5.5825 -0.7044 15 6 4.1480 -5.1765 0.7700 16 6 2.7612 -4.6315 1.1936 17 1 2.0986 -5.4524 1.4678 18 6 2.9054 -3.6664 2.3420 19 8 2.7055 -2.4880 2.1691 20 1 -0.4850 0.8400 0.0004 21 1 2.1531 -4.9458 -1.8469 22 1 3.4428 -3.7169 -1.7227 23 1 3.4295 -6.5709 -0.7570 24 1 4.8095 -5.5519 -1.2827 25 1 4.9090 -4.3986 0.8317 26 1 4.4276 -6.0422 1.3705 27 1 3.1876 -4.0285 3.3195 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725616056.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:01 Heat of formation + Delta-G solvation = -110.989697 kcal Electronic energy + Delta-G solvation = -15502.475803 eV Core-core repulsion = 12773.579779 eV Total energy + Delta-G solvation = -2728.896024 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.055 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.19074 -36.96996 -34.99281 -33.80770 -32.87712 -30.31223 -29.46125 -25.91588 -23.60944 -21.11772 -20.52098 -18.53549 -17.24780 -16.66859 -16.06213 -14.88706 -14.74393 -14.23561 -13.88563 -13.69693 -13.36262 -13.11406 -12.74503 -12.14011 -11.81172 -11.53760 -11.10050 -11.05337 -10.98568 -10.61832 -10.46601 -10.24445 -10.14289 -10.04265 -9.19557 -9.02382 -8.73786 -8.06594 -6.49714 -5.01097 2.36657 2.62146 3.17068 3.23725 3.32475 4.19244 4.41190 4.66175 4.76497 4.88458 5.10132 5.22282 5.54737 5.64019 5.78427 5.85851 5.93840 5.98337 6.16447 6.26856 6.36974 6.47384 6.88102 7.50473 7.54170 8.08109 8.23632 9.11484 10.44842 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.033891 B = 0.011710 C = 0.011096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.981394 B = 2390.555106 C = 2522.805252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.130 3.870 3 Si 0.919 3.081 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.981 4.981 8 H 0.099 0.901 9 S 2.732 3.268 10 O -1.009 7.009 11 O -1.000 7.000 12 N -1.012 6.012 13 C 0.122 3.878 14 C -0.127 4.127 15 C -0.116 4.116 16 C 0.089 3.911 17 H 0.093 0.907 18 C 0.304 3.696 19 O -0.392 6.392 20 H 0.286 0.714 21 H 0.064 0.936 22 H 0.063 0.937 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.479 -10.041 1.762 13.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.198 1.198 7 C -1.115 5.115 8 H 0.117 0.883 9 S 2.834 3.166 10 O -1.000 7.000 11 O -0.991 6.991 12 N -0.848 5.848 13 C -0.004 4.004 14 C -0.165 4.165 15 C -0.155 4.155 16 C -0.019 4.019 17 H 0.111 0.889 18 C 0.154 3.846 19 O -0.258 6.258 20 H 0.096 0.904 21 H 0.083 0.917 22 H 0.081 0.919 23 H 0.092 0.908 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.176 -9.372 1.642 12.545 hybrid contribution 0.944 1.076 0.063 1.433 sum 9.121 -8.296 1.705 12.446 Atomic orbital electron populations 1.69909 1.06693 1.30127 1.42150 1.24711 0.94392 1.00581 0.88829 0.86163 0.80455 0.80795 0.78171 1.18856 1.19944 1.19846 1.30407 1.05753 1.11093 1.64263 0.88313 1.00039 0.71387 0.72752 0.72428 1.93350 1.72569 1.87630 1.46433 1.93326 1.72946 1.87343 1.45478 1.59286 1.61335 1.54093 1.10040 1.21538 0.95079 0.95724 0.88096 1.22618 0.99365 0.98795 0.95770 1.22650 0.95369 1.00855 0.96627 1.22286 0.96119 0.95836 0.87703 0.88925 1.26205 0.74576 0.90373 0.93455 1.90742 1.31354 1.18799 1.84906 0.90359 0.91723 0.91894 0.90842 0.90439 0.90479 0.89907 0.88705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.80 13.19 55.43 0.73 -26.07 15 2 C 0.13 3.89 5.46 -17.82 -0.10 3.79 15 3 Si 0.92 22.24 29.54 -169.99 -5.02 17.21 15 4 H -0.26 -6.20 7.11 56.52 0.40 -5.80 15 5 H -0.27 -6.32 7.11 56.52 0.40 -5.91 15 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 7 C -0.98 -28.94 7.67 30.60 0.23 -28.71 15 8 H 0.10 2.76 7.73 -52.49 -0.41 2.36 15 9 S 2.73 77.28 4.36 -107.50 -0.47 76.81 15 10 O -1.01 -31.21 17.67 -57.17 -1.01 -32.22 15 11 O -1.00 -30.48 15.47 -66.44 -1.03 -31.51 15 12 N -1.01 -21.29 3.49 -105.67 -0.37 -21.66 15 13 C 0.12 2.06 7.04 -3.07 -0.02 2.04 15 14 C -0.13 -1.47 6.95 -24.90 -0.17 -1.64 15 15 C -0.12 -1.33 6.49 -24.58 -0.16 -1.49 15 16 C 0.09 1.43 3.64 -67.57 -0.25 1.18 15 17 H 0.09 1.30 8.14 -51.93 -0.42 0.87 15 18 C 0.30 5.28 10.44 36.00 0.38 5.65 15 19 O -0.39 -9.31 12.38 -16.58 -0.21 -9.52 15 20 H 0.29 8.05 8.31 -40.82 -0.34 7.71 15 21 H 0.06 1.08 8.14 -51.93 -0.42 0.66 15 22 H 0.06 1.07 8.14 -51.92 -0.42 0.64 15 23 H 0.07 0.73 8.14 -51.92 -0.42 0.30 15 24 H 0.08 0.74 8.14 -51.93 -0.42 0.31 15 25 H 0.08 0.90 8.05 -51.93 -0.42 0.48 15 26 H 0.08 0.66 8.14 -51.93 -0.42 0.23 15 27 H 0.10 1.13 8.06 -52.49 -0.42 0.71 15 LS Contribution 246.09 15.07 3.71 3.71 Total: -1.00 -39.16 246.09 -6.67 -45.83 By element: Atomic # 1 Polarization: -0.51 SS G_CDS: -2.92 Total: -3.43 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -0.09 Total: -19.17 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: 0.36 Total: -47.73 kcal Atomic # 8 Polarization: -71.00 SS G_CDS: -2.24 Total: -73.24 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Atomic # 16 Polarization: 77.28 SS G_CDS: -0.47 Total: 76.81 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -39.16 -6.67 -45.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725616056.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.161 kcal (2) G-P(sol) polarization free energy of solvation -39.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds