Wall clock time and date at job start Mon Mar 30 2020 03:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.88324 * 2 1 4 4 C 1.53812 * 110.03321 * 121.12917 * 2 1 3 5 5 C 1.51956 * 104.64244 * 136.55975 * 4 2 1 6 6 O 1.20762 * 127.92797 * 152.38013 * 5 4 2 7 7 C 1.51677 * 104.15025 * 332.36224 * 5 4 2 8 8 N 1.46866 * 106.74861 * 28.80234 * 7 5 4 9 9 S 1.65604 * 125.66937 * 161.46257 * 8 7 5 10 10 O 1.42095 * 106.39929 * 203.56539 * 9 8 7 11 11 O 1.42097 * 106.40058 * 336.48680 * 9 8 7 12 12 C 1.76204 * 107.21648 * 90.02750 * 9 8 7 13 13 H 1.08002 * 119.99729 * 359.97438 * 12 9 8 14 14 C 1.37874 * 119.99755 * 179.97438 * 12 9 8 15 15 N 1.31510 * 120.00106 * 359.97438 * 14 12 9 16 16 Si 1.86797 * 119.99785 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.47466 * 60.00153 * 16 14 12 18 18 H 1.48507 * 109.47204 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47444 * 299.99727 * 16 14 12 20 20 H 1.08996 * 109.47228 * 181.04063 * 1 2 3 21 21 H 1.09000 * 109.46997 * 301.03767 * 1 2 3 22 22 H 1.09000 * 109.47081 * 61.03856 * 1 2 3 23 23 H 1.08999 * 110.40506 * 255.35199 * 4 2 1 24 24 H 1.09002 * 110.40334 * 17.65694 * 4 2 1 25 25 H 1.09005 * 110.00804 * 269.48611 * 7 5 4 26 26 H 1.09005 * 110.00679 * 148.12579 * 7 5 4 27 27 H 0.97000 * 120.00246 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9007 1.0250 0.0000 4 6 2.0569 -0.7470 1.2370 5 6 3.1914 -1.6099 0.7102 6 8 4.1650 -2.0016 1.3076 7 6 2.8203 -1.8668 -0.7378 8 7 2.0297 -0.7121 -1.1834 9 16 1.7488 -0.2839 -2.7583 10 8 1.4539 1.1060 -2.7496 11 8 2.8050 -0.8496 -3.5223 12 6 0.2735 -1.1025 -3.2662 13 1 -0.2551 -1.7415 -2.5742 14 6 -0.2062 -0.9272 -4.5468 15 7 0.4371 -0.1487 -5.3891 16 14 -1.7699 -1.7955 -5.0855 17 1 -2.8973 -1.3681 -4.2186 18 1 -2.0705 -1.4439 -6.4967 19 1 -1.5856 -3.2645 -4.9694 20 1 -0.3633 -1.0275 0.0187 21 1 -0.3633 0.5299 0.8805 22 1 -0.3633 0.4976 -0.8992 23 1 2.4298 -0.0398 1.9778 24 1 1.2725 -1.3693 1.6678 25 1 2.2261 -2.7774 -0.8147 26 1 3.7221 -1.9573 -1.3435 27 1 0.0995 -0.0250 -6.2900 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725616238.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:28 Heat of formation + Delta-G solvation = -125.815249 kcal Electronic energy + Delta-G solvation = -15111.301045 eV Core-core repulsion = 12381.762137 eV Total energy + Delta-G solvation = -2729.538908 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.055 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.65716 -36.94815 -35.35650 -34.05653 -33.15028 -30.96645 -29.16036 -26.20193 -25.56987 -21.24829 -19.91569 -18.63974 -17.74236 -16.37100 -15.97847 -15.29174 -14.84954 -14.75259 -14.08455 -14.03609 -13.55024 -13.13611 -12.75217 -12.31743 -12.04204 -11.85658 -11.39944 -11.24403 -11.16724 -10.89252 -10.66197 -10.50174 -10.36597 -10.29625 -9.48470 -9.28806 -9.02002 -8.34528 -6.75218 -5.38094 1.84205 2.14307 3.04974 3.09962 3.14698 3.99810 4.23054 4.39412 4.57193 4.73375 4.93219 5.11007 5.58091 5.64482 5.68578 5.76248 5.87864 5.92750 6.01074 6.13352 6.35527 6.67387 6.70256 7.26270 7.27967 7.51751 7.91394 8.83131 10.18685 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.037765 B = 0.009530 C = 0.009104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.252530 B = 2937.412822 C = 3074.698146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.155 3.845 3 H 0.081 0.919 4 C -0.186 4.186 5 C 0.376 3.624 6 O -0.441 6.441 7 C 0.066 3.934 8 N -1.011 6.011 9 S 2.726 3.274 10 O -0.994 6.994 11 O -0.999 6.999 12 C -1.017 5.017 13 H 0.104 0.896 14 C 0.133 3.867 15 N -0.846 5.846 16 Si 0.922 3.078 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.264 1.264 20 H 0.063 0.937 21 H 0.064 0.936 22 H 0.079 0.921 23 H 0.099 0.901 24 H 0.113 0.887 25 H 0.098 0.902 26 H 0.102 0.898 27 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.676 -2.170 9.763 10.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.048 3.952 3 H 0.099 0.901 4 C -0.225 4.225 5 C 0.249 3.751 6 O -0.312 6.312 7 C -0.062 4.062 8 N -0.847 5.847 9 S 2.828 3.172 10 O -0.985 6.985 11 O -0.989 6.989 12 C -1.150 5.150 13 H 0.122 0.878 14 C -0.085 4.085 15 N -0.475 5.475 16 Si 0.746 3.254 17 H -0.188 1.188 18 H -0.201 1.201 19 H -0.189 1.189 20 H 0.082 0.918 21 H 0.083 0.917 22 H 0.098 0.902 23 H 0.118 0.882 24 H 0.131 0.869 25 H 0.116 0.884 26 H 0.120 0.880 27 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.557 -1.667 9.327 9.492 hybrid contribution -1.473 -0.814 -0.308 1.711 sum -2.030 -2.481 9.019 9.572 Atomic orbital electron populations 1.22341 0.94448 1.02913 1.03514 1.20934 0.94796 0.95995 0.83429 0.90062 1.23093 0.99263 1.00767 0.99342 1.25019 0.84015 0.75692 0.90378 1.90418 1.27667 1.46257 1.66891 1.21874 0.97899 0.91351 0.95055 1.59193 1.65271 1.37114 1.23106 1.00305 0.75465 0.73520 0.67900 1.93366 1.86753 1.33848 1.84529 1.93365 1.58988 1.80102 1.66493 1.30535 1.32193 1.45656 1.06654 0.87793 1.24755 0.97664 0.91731 0.94386 1.69879 1.38522 1.31651 1.07470 0.86181 0.81009 0.80261 0.77988 1.18823 1.20126 1.18860 0.91810 0.91746 0.90240 0.88234 0.86929 0.88399 0.88042 0.89728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 9.14 37.16 0.34 -2.22 15 2 C 0.15 2.41 3.50 -67.30 -0.24 2.18 15 3 H 0.08 1.26 8.14 -51.93 -0.42 0.84 15 4 C -0.19 -2.23 6.39 -26.84 -0.17 -2.40 15 5 C 0.38 5.49 8.09 -27.93 -0.23 5.27 15 6 O -0.44 -7.35 17.99 6.00 0.11 -7.24 15 7 C 0.07 1.08 6.94 -4.51 -0.03 1.05 15 8 N -1.01 -19.58 3.40 -107.06 -0.36 -19.94 15 9 S 2.73 70.15 4.75 -107.50 -0.51 69.64 15 10 O -0.99 -27.90 17.37 -57.17 -0.99 -28.90 15 11 O -1.00 -28.62 17.40 -57.17 -1.00 -29.61 15 12 C -1.02 -26.67 9.75 30.60 0.30 -26.37 15 13 H 0.10 2.46 7.81 -52.49 -0.41 2.05 15 14 C 0.13 3.58 5.46 -17.82 -0.10 3.48 15 15 N -0.85 -24.25 13.19 55.43 0.73 -23.52 15 16 Si 0.92 19.89 29.54 -169.99 -5.02 14.87 15 17 H -0.26 -5.47 7.11 56.52 0.40 -5.07 15 18 H -0.28 -5.75 7.11 56.52 0.40 -5.34 15 19 H -0.26 -5.52 7.11 56.52 0.40 -5.12 15 20 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 21 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 22 H 0.08 1.42 7.68 -51.93 -0.40 1.03 15 23 H 0.10 1.00 8.14 -51.93 -0.42 0.58 15 24 H 0.11 1.09 7.77 -51.93 -0.40 0.68 15 25 H 0.10 1.40 8.14 -51.93 -0.42 0.98 15 26 H 0.10 1.74 7.88 -51.93 -0.41 1.33 15 27 H 0.29 7.55 8.31 -40.82 -0.34 7.21 15 LS Contribution 254.37 15.07 3.83 3.83 Total: -1.00 -33.75 254.37 -6.20 -39.95 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -2.87 Total: -0.07 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -0.12 Total: -19.02 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.37 Total: -43.46 kcal Atomic # 8 Polarization: -63.87 SS G_CDS: -1.88 Total: -65.75 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 16 Polarization: 70.15 SS G_CDS: -0.51 Total: 69.64 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -33.75 -6.20 -39.95 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725616238.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.863 kcal (2) G-P(sol) polarization free energy of solvation -33.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds