Wall clock time and date at job start Mon Mar 30 2020 03:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31434 * 1 3 3 Si 1.86800 * 119.99338 * 2 1 4 4 H 1.48503 * 109.47291 * 270.00029 * 3 2 1 5 5 H 1.48497 * 109.47299 * 30.00390 * 3 2 1 6 6 H 1.48506 * 109.46904 * 150.00354 * 3 2 1 7 7 C 1.38793 * 120.00460 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99920 * 359.97438 * 7 2 1 9 9 O 1.34847 * 120.00311 * 179.97438 * 7 2 1 10 10 C 1.34882 * 117.00221 * 179.97438 * 9 7 2 11 11 O 1.21642 * 119.99948 * 0.02562 * 10 9 7 12 12 C 1.46473 * 119.99654 * 179.97438 * 10 9 7 13 13 O 1.35366 * 126.66259 * 0.16257 * 12 10 9 14 14 C 1.33673 * 107.68381 * 180.23002 * 13 12 10 15 15 N 1.30643 * 109.17971 * 359.76561 * 14 13 12 16 16 C 1.33643 * 109.01509 * 0.02562 * 15 14 13 17 17 C 1.50706 * 126.28435 * 179.97438 * 16 15 14 18 18 F 1.39897 * 109.47068 * 120.02243 * 17 16 15 19 19 F 1.39895 * 109.47042 * 240.02552 * 17 16 15 20 20 H 0.96991 * 120.00560 * 359.97438 * 1 2 3 21 21 H 1.07998 * 125.41276 * 179.77480 * 14 13 12 22 22 H 1.09001 * 109.46953 * 0.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4956 2.0466 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5458 1.4403 0.7000 7 6 2.0084 -1.2019 -0.0005 8 1 1.4684 -2.1373 -0.0005 9 8 3.3569 -1.2019 -0.0011 10 6 3.9693 -2.4037 -0.0010 11 8 3.3069 -3.4239 -0.0010 12 6 5.4320 -2.4801 -0.0021 13 8 6.2959 -1.4380 -0.0002 14 6 7.5355 -1.9381 -0.0073 15 7 7.4719 -3.2430 -0.0085 16 6 6.1887 -3.6164 -0.0027 17 6 5.6718 -5.0320 -0.0024 18 9 4.8976 -5.2454 1.1431 19 9 4.8872 -5.2421 -1.1414 20 1 -0.4850 0.8399 0.0004 21 1 8.4452 -1.3560 -0.0113 22 1 6.5125 -5.7258 -0.0072 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860397383.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:24 Heat of formation + Delta-G solvation = -170.392173 kcal Electronic energy + Delta-G solvation = -16310.175865 eV Core-core repulsion = 12889.030475 eV Total energy + Delta-G solvation = -3421.145390 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.033 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.02227 -48.06021 -44.72576 -41.23996 -37.75893 -36.40217 -34.66220 -32.44086 -28.94382 -27.46623 -25.01467 -23.48000 -22.07889 -20.35135 -19.73313 -18.71644 -18.60238 -18.28795 -17.84825 -17.40231 -16.63991 -16.56506 -16.07355 -15.32905 -14.92926 -14.65666 -14.40822 -14.35705 -13.91015 -13.49262 -12.84325 -12.55637 -12.54059 -12.47881 -12.22337 -11.94816 -11.63399 -10.95619 -10.53266 -8.67952 -6.53439 -0.66652 1.05539 1.08422 1.29693 1.30916 1.50023 1.63514 2.07414 2.20655 2.34386 2.80637 3.05794 3.11235 3.67898 3.87851 4.01456 4.12677 4.29321 4.91540 5.25892 5.71288 6.10211 6.24642 6.63085 7.27426 8.43443 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.033320 B = 0.009242 C = 0.007577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.146674 B = 3029.028399 C = 3694.683974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.024 3.976 3 Si 0.981 3.019 4 H -0.256 1.256 5 H -0.257 1.257 6 H -0.254 1.254 7 C -0.408 4.408 8 H 0.069 0.931 9 O -0.236 6.236 10 C 0.475 3.525 11 O -0.520 6.520 12 C -0.041 4.041 13 O -0.182 6.182 14 C 0.239 3.761 15 N -0.483 5.483 16 C -0.014 4.014 17 C 0.352 3.648 18 F -0.201 7.201 19 F -0.200 7.200 20 H 0.296 0.704 21 H 0.330 0.670 22 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.063 -1.296 -0.019 18.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.179 4.179 3 Si 0.800 3.200 4 H -0.180 1.180 5 H -0.181 1.181 6 H -0.178 1.178 7 C -0.483 4.483 8 H 0.087 0.913 9 O -0.145 6.145 10 C 0.321 3.679 11 O -0.416 6.416 12 C -0.097 4.097 13 O -0.068 6.068 14 C 0.015 3.985 15 N -0.210 5.210 16 C -0.138 4.138 17 C 0.298 3.702 18 F -0.182 7.182 19 F -0.182 7.182 20 H 0.106 0.894 21 H 0.344 0.656 22 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 18.134 -1.789 -0.019 18.222 hybrid contribution -1.137 0.788 -0.005 1.383 sum 16.998 -1.001 -0.024 17.027 Atomic orbital electron populations 1.69662 1.07458 1.30865 1.45554 1.25579 0.95994 1.02692 0.93599 0.85122 0.78986 0.75759 0.80170 1.18037 1.18065 1.17814 1.20481 0.76630 0.96591 1.54646 0.91335 1.83593 1.23079 1.31003 1.76775 1.19096 0.85556 0.83009 0.80211 1.90846 1.64409 1.36100 1.50231 1.21623 0.88562 0.86977 1.12533 1.84654 1.18238 1.35744 1.68132 1.29977 0.87355 0.88966 0.92190 1.70213 1.16874 1.13829 1.20044 1.22568 0.90140 0.96247 1.04854 1.19923 0.87877 0.91152 0.71247 1.93026 1.78651 1.95273 1.51226 1.93027 1.78121 1.95323 1.51685 0.89411 0.65620 0.79773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.05 13.96 21.63 0.30 -52.75 14 2 C 0.02 1.38 5.50 84.89 0.47 1.84 14 3 Si 0.98 42.90 28.62 68.60 1.96 44.86 14 4 H -0.26 -10.57 7.11 99.48 0.71 -9.86 14 5 H -0.26 -10.25 7.11 99.48 0.71 -9.54 14 6 H -0.25 -10.90 7.11 99.48 0.71 -10.19 14 7 C -0.41 -25.24 10.11 67.95 0.69 -24.55 14 8 H 0.07 4.76 7.09 -2.91 -0.02 4.74 14 9 O -0.24 -13.12 8.58 10.83 0.09 -13.03 14 10 C 0.47 24.34 7.87 69.97 0.55 24.89 14 11 O -0.52 -29.33 13.19 19.37 0.26 -29.08 14 12 C -0.04 -1.62 7.25 24.01 0.17 -1.45 14 13 O -0.18 -5.58 10.79 -7.39 -0.08 -5.65 14 14 C 0.24 4.46 13.21 130.42 1.72 6.19 14 15 N -0.48 -11.93 11.25 -302.99 -3.41 -15.34 14 16 C -0.01 -0.47 6.60 41.88 0.28 -0.19 14 17 C 0.35 11.01 5.10 71.24 0.36 11.38 14 18 F -0.20 -7.50 16.22 44.97 0.73 -6.77 14 19 F -0.20 -7.50 16.18 44.97 0.73 -6.77 14 20 H 0.30 15.57 8.31 -92.71 -0.77 14.80 14 21 H 0.33 0.83 8.06 -2.91 -0.02 0.81 14 22 H 0.19 3.61 8.14 -2.39 -0.02 3.59 14 Total: -1.00 -78.21 227.34 6.11 -72.10 By element: Atomic # 1 Polarization: -6.96 SS G_CDS: 1.29 Total: -5.67 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: 4.24 Total: 18.10 kcal Atomic # 7 Polarization: -64.99 SS G_CDS: -3.11 Total: -68.09 kcal Atomic # 8 Polarization: -48.03 SS G_CDS: 0.27 Total: -47.76 kcal Atomic # 9 Polarization: -15.00 SS G_CDS: 1.46 Total: -13.54 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.96 Total: 44.86 kcal Total: -78.21 6.11 -72.10 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860397383.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.294 kcal (2) G-P(sol) polarization free energy of solvation -78.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds