Wall clock time and date at job start Mon Mar 30 2020 03:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 S 1.76198 * 119.99739 * 180.02562 * 7 2 1 10 10 O 1.42099 * 106.39960 * 293.53526 * 9 7 2 11 11 O 1.42100 * 106.40650 * 66.45676 * 9 7 2 12 12 N 1.65599 * 107.21634 * 180.02562 * 9 7 2 13 13 C 1.47022 * 125.65219 * 90.01971 * 12 9 7 14 14 C 1.54324 * 107.27436 * 181.02353 * 13 12 9 15 15 C 1.55156 * 102.94027 * 22.19608 * 14 13 12 16 16 C 1.47424 * 125.64883 * 269.71295 * 12 9 7 17 17 H 1.08997 * 110.37035 * 274.75008 * 16 12 9 18 18 C 1.50704 * 110.36605 * 37.07201 * 16 12 9 19 19 O 1.20766 * 119.99606 * 240.00657 * 18 16 12 20 20 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.88287 * 300.44049 * 13 12 9 22 22 H 1.09001 * 109.87869 * 61.60575 * 13 12 9 23 23 H 1.09003 * 110.71781 * 140.55348 * 14 13 12 24 24 H 1.08998 * 110.71743 * 263.65291 * 14 13 12 25 25 H 1.08993 * 111.00557 * 82.57376 * 15 14 13 26 26 H 1.09003 * 111.00423 * 206.38664 * 15 14 13 27 27 H 1.07996 * 120.00647 * 59.99389 * 18 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 16 3.7665 -1.1941 0.0001 10 8 4.1682 -0.6489 -1.2491 11 8 4.1674 -0.6504 1.2503 12 7 4.2567 -2.7759 -0.0014 13 6 4.5113 -3.5929 -1.1969 14 6 4.9192 -5.0000 -0.7119 15 6 4.3243 -5.0601 0.7198 16 6 4.5163 -3.5961 1.1957 17 1 5.5357 -3.4401 1.5488 18 6 3.5269 -3.2648 2.2831 19 8 3.9166 -2.8472 3.3472 20 1 -0.4850 0.8401 0.0004 21 1 3.6066 -3.6571 -1.8016 22 1 5.3197 -3.1533 -1.7811 23 1 4.4777 -5.7693 -1.3455 24 1 6.0044 -5.0994 -0.6861 25 1 3.2688 -5.3306 0.6933 26 1 4.8869 -5.7508 1.3480 27 1 2.4695 -3.4007 2.1109 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885864152.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:02 Heat of formation + Delta-G solvation = -105.709319 kcal Electronic energy + Delta-G solvation = -15307.952291 eV Core-core repulsion = 12579.285242 eV Total energy + Delta-G solvation = -2728.667049 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.055 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.19653 -37.36803 -35.72262 -34.51801 -33.09611 -30.58846 -29.54372 -26.47609 -23.52490 -21.44205 -20.92712 -18.61176 -17.85739 -16.81520 -16.15859 -15.53534 -14.97423 -14.70363 -13.92906 -13.69989 -13.51622 -13.26569 -13.08922 -12.84204 -12.32794 -11.67203 -11.48467 -11.36234 -11.14023 -10.86273 -10.70210 -10.69876 -10.53369 -9.88864 -9.45622 -9.26120 -9.13254 -8.34945 -6.86703 -5.42435 1.77480 2.34172 3.03920 3.15596 3.23669 3.91436 4.15220 4.44875 4.54810 4.71852 4.80776 5.02499 5.33139 5.37382 5.56765 5.75080 5.81195 5.86767 5.93929 6.07574 6.14534 6.28789 6.52586 7.06255 7.41880 7.74150 8.12056 8.63511 10.25074 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.033098 B = 0.012061 C = 0.010961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.760073 B = 2321.016525 C = 2553.817202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.155 3.845 3 Si 0.798 3.202 4 H -0.245 1.245 5 H -0.220 1.220 6 H -0.253 1.253 7 C -1.018 5.018 8 H 0.124 0.876 9 S 2.676 3.324 10 O -0.999 6.999 11 O -0.997 6.997 12 N -1.001 6.001 13 C 0.122 3.878 14 C -0.126 4.126 15 C -0.121 4.121 16 C 0.091 3.909 17 H 0.090 0.910 18 C 0.331 3.669 19 O -0.435 6.435 20 H 0.282 0.718 21 H 0.070 0.930 22 H 0.067 0.933 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.971 -9.942 -1.283 11.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.065 4.065 3 Si 0.618 3.382 4 H -0.168 1.168 5 H -0.143 1.143 6 H -0.177 1.177 7 C -1.152 5.152 8 H 0.142 0.858 9 S 2.780 3.220 10 O -0.989 6.989 11 O -0.987 6.987 12 N -0.839 5.839 13 C -0.004 4.004 14 C -0.165 4.165 15 C -0.160 4.160 16 C -0.017 4.017 17 H 0.107 0.893 18 C 0.183 3.817 19 O -0.302 6.302 20 H 0.092 0.908 21 H 0.088 0.912 22 H 0.086 0.914 23 H 0.100 0.900 24 H 0.092 0.908 25 H 0.103 0.897 26 H 0.100 0.900 27 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.596 -8.795 -0.686 11.015 hybrid contribution -0.539 0.496 -0.197 0.759 sum 6.057 -8.299 -0.882 10.312 Atomic orbital electron populations 1.69973 1.06502 1.29186 1.39112 1.24394 0.94795 0.98767 0.88543 0.87903 0.83616 0.84618 0.82039 1.16836 1.14250 1.17671 1.30491 1.15226 1.02304 1.67185 0.85829 1.01506 0.77506 0.69488 0.73515 1.93464 1.85390 1.74887 1.45202 1.93469 1.85352 1.74906 1.45006 1.58794 1.84988 1.30000 1.10149 1.21638 1.01069 0.90309 0.87341 1.22621 1.01122 0.96644 0.96075 1.22790 1.02607 0.93936 0.96635 1.22527 0.99874 0.92223 0.87084 0.89256 1.26395 0.96138 0.72296 0.86899 1.90352 1.83434 1.29023 1.27384 0.90761 0.91165 0.91448 0.90015 0.90787 0.89696 0.89952 0.87642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.29 13.96 55.43 0.77 -22.51 15 2 C 0.16 4.42 5.47 -17.82 -0.10 4.32 15 3 Si 0.80 20.66 26.54 -169.99 -4.51 16.15 15 4 H -0.24 -6.26 7.11 56.52 0.40 -5.86 15 5 H -0.22 -5.82 5.60 56.52 0.32 -5.51 15 6 H -0.25 -5.96 7.11 56.52 0.40 -5.56 15 7 C -1.02 -27.81 10.29 30.60 0.31 -27.50 15 8 H 0.12 3.31 8.06 -52.49 -0.42 2.89 15 9 S 2.68 67.67 3.87 -107.50 -0.42 67.26 15 10 O -1.00 -26.95 15.60 -57.17 -0.89 -27.84 15 11 O -1.00 -27.38 15.44 -57.17 -0.88 -28.27 15 12 N -1.00 -19.34 3.58 -105.53 -0.38 -19.72 15 13 C 0.12 1.85 6.99 -3.06 -0.02 1.83 15 14 C -0.13 -1.35 6.95 -24.90 -0.17 -1.52 15 15 C -0.12 -1.36 6.50 -24.46 -0.16 -1.52 15 16 C 0.09 1.48 3.57 -67.45 -0.24 1.24 15 17 H 0.09 1.42 8.14 -51.93 -0.42 1.00 15 18 C 0.33 6.11 9.06 36.01 0.33 6.44 15 19 O -0.44 -9.42 17.91 5.99 0.11 -9.31 15 20 H 0.28 7.29 8.31 -40.82 -0.34 6.95 15 21 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 22 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 23 H 0.08 0.69 8.14 -51.93 -0.42 0.27 15 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 15 25 H 0.08 0.88 8.06 -51.93 -0.42 0.46 15 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 15 27 H 0.11 1.78 8.06 -52.49 -0.42 1.36 15 LS Contribution 246.86 15.07 3.72 3.72 Total: -1.00 -33.90 246.86 -5.55 -39.45 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: -3.02 Total: -2.23 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: -0.05 Total: -16.70 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: 0.40 Total: -42.23 kcal Atomic # 8 Polarization: -63.75 SS G_CDS: -1.67 Total: -65.42 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.51 Total: 16.15 kcal Atomic # 16 Polarization: 67.67 SS G_CDS: -0.42 Total: 67.26 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -33.90 -5.55 -39.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885864152.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.260 kcal (2) G-P(sol) polarization free energy of solvation -33.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds