Wall clock time and date at job start Mon Mar 30 2020 03:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00043 * 2 1 4 4 H 1.48500 * 109.46925 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46793 * 300.00166 * 3 2 1 6 6 H 1.48498 * 109.46814 * 60.00066 * 3 2 1 7 7 C 1.38813 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99890 * 163.07876 * 7 2 1 9 9 N 1.36938 * 119.99936 * 343.08512 * 7 2 1 10 10 C 1.46931 * 120.62972 * 151.83343 * 9 7 2 11 11 C 1.53189 * 108.89061 * 126.29441 * 10 9 7 12 12 C 1.53349 * 109.15350 * 54.57922 * 11 10 9 13 13 O 1.45198 * 109.42281 * 178.67128 * 12 11 10 14 14 C 1.34303 * 116.99880 * 270.12641 * 13 12 11 15 15 O 1.21253 * 120.00338 * 359.97438 * 14 13 12 16 16 Cl 1.73608 * 119.99979 * 179.97438 * 14 13 12 17 17 C 1.53047 * 109.60312 * 298.71070 * 12 11 10 18 18 C 1.46927 * 120.63023 * 331.80303 * 9 7 2 19 19 H 0.96996 * 119.99787 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.58339 * 246.15009 * 10 9 7 21 21 H 1.09003 * 109.58852 * 6.43598 * 10 9 7 22 22 H 1.09001 * 109.49505 * 174.65848 * 11 10 9 23 23 H 1.08994 * 109.50061 * 294.75020 * 11 10 9 24 24 H 1.08997 * 109.42274 * 58.74421 * 12 11 10 25 25 H 1.09000 * 109.49464 * 301.42009 * 17 12 11 26 26 H 1.08999 * 109.52117 * 181.33762 * 17 12 11 27 27 H 1.09002 * 109.58255 * 353.42549 * 18 9 7 28 28 H 1.09000 * 109.58150 * 113.70283 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2717 9 7 1.3700 -2.3623 0.3461 10 6 1.8140 -3.6530 -0.1978 11 6 2.0709 -4.6185 0.9634 12 6 0.8133 -4.7005 1.8372 13 8 1.0396 -5.6385 2.9222 14 6 0.7207 -6.9230 2.6942 15 8 0.2656 -7.2532 1.6199 16 17 0.9601 -8.1107 3.9376 17 6 0.4986 -3.3187 2.4150 18 6 0.2264 -2.3400 1.2683 19 1 -0.4849 0.8400 0.0004 20 1 1.0401 -4.0610 -0.8480 21 1 2.7331 -3.5130 -0.7669 22 1 2.3090 -5.6064 0.5691 23 1 2.9059 -4.2542 1.5616 24 1 -0.0269 -5.0410 1.2321 25 1 1.3485 -2.9667 2.9997 26 1 -0.3815 -3.3832 3.0548 27 1 0.0994 -1.3342 1.6687 28 1 -0.6773 -2.6386 0.7370 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958530060.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:34 Heat of formation + Delta-G solvation = -72.567181 kcal Electronic energy + Delta-G solvation = -14671.470557 eV Core-core repulsion = 11942.196952 eV Total energy + Delta-G solvation = -2729.273605 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.46723 -37.76906 -36.85585 -36.15934 -32.81803 -30.52381 -29.77877 -25.59491 -23.53362 -22.37010 -21.54809 -19.55851 -18.38084 -17.34178 -16.64287 -16.21252 -14.96113 -14.24157 -13.73226 -13.65864 -13.27829 -13.04072 -12.72943 -11.81149 -11.78754 -11.64896 -11.47181 -11.25955 -11.09662 -10.84766 -10.80456 -10.48456 -10.27778 -10.02628 -9.78617 -9.63971 -8.58266 -6.83213 -5.90243 -3.33218 0.73106 1.81273 3.32130 3.40601 3.42742 3.79208 4.41147 5.04131 5.15682 5.28073 5.38919 5.49972 5.76971 5.97200 6.07667 6.25140 6.33807 6.43598 6.50832 6.60555 6.80639 7.16128 7.30083 7.48073 7.71025 8.32750 9.08696 9.70997 10.26801 11.19078 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.067284 B = 0.005623 C = 0.005557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.046525 B = 4978.703414 C = 5037.039397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.004 3.996 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.257 4.257 8 H 0.069 0.931 9 N -0.591 5.591 10 C 0.148 3.852 11 C -0.149 4.149 12 C 0.100 3.900 13 O -0.332 6.332 14 C 0.509 3.491 15 O -0.466 6.466 16 Cl -0.039 7.039 17 C -0.136 4.136 18 C 0.174 3.826 19 H 0.255 0.745 20 H 0.024 0.976 21 H 0.064 0.936 22 H 0.058 0.942 23 H 0.073 0.927 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.550 -10.764 6.595 12.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.386 4.386 8 H 0.087 0.913 9 N -0.314 5.314 10 C 0.022 3.978 11 C -0.189 4.189 12 C 0.047 3.953 13 O -0.249 6.249 14 C 0.324 3.676 15 O -0.354 6.354 16 Cl -0.013 7.013 17 C -0.175 4.175 18 C 0.047 3.953 19 H 0.065 0.935 20 H 0.042 0.958 21 H 0.083 0.917 22 H 0.077 0.923 23 H 0.091 0.909 24 H 0.103 0.897 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.118 0.882 28 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 1.331 -10.737 6.313 12.527 hybrid contribution 0.358 0.597 0.091 0.702 sum 1.689 -10.140 6.404 12.112 Atomic orbital electron populations 1.70014 1.05316 1.25709 1.53590 1.25084 0.95337 0.98610 1.00453 0.86188 0.79394 0.83632 0.77349 1.20158 1.21630 1.21428 1.19240 0.92735 0.84575 1.42067 0.91342 1.44150 1.35729 1.01765 1.49748 1.20872 0.98523 0.86356 0.92089 1.22611 0.96891 1.00446 0.98955 1.23444 0.99671 0.86717 0.85424 1.86614 1.76377 1.15018 1.46904 1.24114 0.75732 0.83463 0.84333 1.90934 1.42243 1.79638 1.22567 1.98542 1.94548 1.52298 1.55940 1.22563 1.01716 0.91831 1.01389 1.20859 0.89045 0.97973 0.87398 0.93454 0.95818 0.91743 0.92312 0.90870 0.89661 0.91012 0.91929 0.88229 0.95688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.31 11.20 55.49 0.62 -24.68 15 2 C 0.00 0.11 4.92 -17.43 -0.09 0.02 15 3 Si 0.90 21.04 29.59 -169.99 -5.03 16.01 15 4 H -0.28 -6.30 7.11 56.52 0.40 -5.89 15 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 15 6 H -0.29 -6.70 7.11 56.52 0.40 -6.30 15 7 C -0.26 -6.81 9.58 -15.06 -0.14 -6.96 15 8 H 0.07 1.78 7.89 -52.48 -0.41 1.37 15 9 N -0.59 -14.31 2.99 -172.32 -0.52 -14.82 15 10 C 0.15 3.03 6.50 -3.71 -0.02 3.01 15 11 C -0.15 -2.63 5.75 -26.45 -0.15 -2.78 15 12 C 0.10 1.76 2.42 -26.53 -0.06 1.69 15 13 O -0.33 -5.31 9.92 -39.43 -0.39 -5.70 15 14 C 0.51 7.67 8.63 101.05 0.87 8.54 15 15 O -0.47 -8.06 16.41 -19.09 -0.31 -8.37 15 16 Cl -0.04 -0.46 29.32 -51.86 -1.52 -1.98 15 17 C -0.14 -2.50 5.74 -26.61 -0.15 -2.65 15 18 C 0.17 3.94 5.30 -3.71 -0.02 3.92 15 19 H 0.26 6.91 8.31 -40.82 -0.34 6.57 15 20 H 0.02 0.49 8.14 -51.93 -0.42 0.07 15 21 H 0.06 1.27 7.93 -51.93 -0.41 0.86 15 22 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 23 H 0.07 1.29 8.14 -51.93 -0.42 0.87 15 24 H 0.09 1.55 7.15 -51.93 -0.37 1.18 15 25 H 0.07 1.34 8.14 -51.93 -0.42 0.91 15 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 15 27 H 0.10 2.51 6.06 -51.93 -0.31 2.20 15 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 15 LS Contribution 255.79 15.07 3.85 3.85 Total: -1.00 -27.91 255.79 -6.25 -34.16 By element: Atomic # 1 Polarization: -0.08 SS G_CDS: -3.18 Total: -3.27 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 0.23 Total: 4.80 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.11 Total: -39.51 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.70 Total: -14.07 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.52 Total: -1.98 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -27.91 -6.25 -34.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958530060.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.408 kcal (2) G-P(sol) polarization free energy of solvation -27.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds