Wall clock time and date at job start Mon Mar 30 2020 03:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00043 * 2 1 4 4 H 1.48500 * 109.46925 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46793 * 300.00166 * 3 2 1 6 6 H 1.48498 * 109.46814 * 60.00066 * 3 2 1 7 7 C 1.38813 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99890 * 163.07876 * 7 2 1 9 9 N 1.36938 * 119.99936 * 343.08512 * 7 2 1 10 10 C 1.46931 * 120.62972 * 151.83343 * 9 7 2 11 11 C 1.53189 * 108.89061 * 126.29441 * 10 9 7 12 12 C 1.53349 * 109.15350 * 54.57922 * 11 10 9 13 13 O 1.45198 * 109.42281 * 178.67128 * 12 11 10 14 14 C 1.34303 * 116.99880 * 270.12641 * 13 12 11 15 15 O 1.21253 * 120.00338 * 359.97438 * 14 13 12 16 16 Cl 1.73608 * 119.99979 * 179.97438 * 14 13 12 17 17 C 1.53047 * 109.60312 * 298.71070 * 12 11 10 18 18 C 1.46927 * 120.63023 * 331.80303 * 9 7 2 19 19 H 0.96996 * 119.99787 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.58339 * 246.15009 * 10 9 7 21 21 H 1.09003 * 109.58852 * 6.43598 * 10 9 7 22 22 H 1.09001 * 109.49505 * 174.65848 * 11 10 9 23 23 H 1.08994 * 109.50061 * 294.75020 * 11 10 9 24 24 H 1.08997 * 109.42274 * 58.74421 * 12 11 10 25 25 H 1.09000 * 109.49464 * 301.42009 * 17 12 11 26 26 H 1.08999 * 109.52117 * 181.33762 * 17 12 11 27 27 H 1.09002 * 109.58255 * 353.42549 * 18 9 7 28 28 H 1.09000 * 109.58150 * 113.70283 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2717 9 7 1.3700 -2.3623 0.3461 10 6 1.8140 -3.6530 -0.1978 11 6 2.0709 -4.6185 0.9634 12 6 0.8133 -4.7005 1.8372 13 8 1.0396 -5.6385 2.9222 14 6 0.7207 -6.9230 2.6942 15 8 0.2656 -7.2532 1.6199 16 17 0.9601 -8.1107 3.9376 17 6 0.4986 -3.3187 2.4150 18 6 0.2264 -2.3400 1.2683 19 1 -0.4849 0.8400 0.0004 20 1 1.0401 -4.0610 -0.8480 21 1 2.7331 -3.5130 -0.7669 22 1 2.3090 -5.6064 0.5691 23 1 2.9059 -4.2542 1.5616 24 1 -0.0269 -5.0410 1.2321 25 1 1.3485 -2.9667 2.9997 26 1 -0.3815 -3.3832 3.0548 27 1 0.0994 -1.3342 1.6687 28 1 -0.6773 -2.6386 0.7370 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958530060.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:34 Heat of formation + Delta-G solvation = -88.369280 kcal Electronic energy + Delta-G solvation = -14672.155787 eV Core-core repulsion = 11942.196952 eV Total energy + Delta-G solvation = -2729.958835 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.76380 -39.24331 -38.05233 -37.58675 -34.63960 -32.21060 -31.51129 -27.36966 -25.07653 -23.97802 -23.07707 -21.14844 -19.69205 -18.97203 -18.16548 -17.52946 -16.84357 -15.87525 -15.43796 -15.11352 -14.87441 -14.67193 -14.33840 -13.35554 -13.12180 -13.00766 -12.86779 -12.70860 -12.65325 -12.55135 -12.35732 -12.10654 -11.97869 -11.85495 -11.48586 -11.19648 -10.57927 -8.77267 -7.91577 -5.37236 -0.44266 0.60396 1.48037 1.50790 1.60826 2.46330 2.50444 3.26347 3.55117 3.68300 3.72205 4.04402 4.30143 4.52532 4.53327 4.69736 4.81949 4.91315 5.01030 5.06747 5.22200 5.39638 5.61402 5.66251 6.05228 6.35897 7.10571 7.78574 8.30617 9.16291 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.067284 B = 0.005623 C = 0.005557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.046525 B = 4978.703414 C = 5037.039397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.047 4.047 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.288 1.288 7 C -0.266 4.266 8 H 0.070 0.930 9 N -0.610 5.610 10 C 0.146 3.854 11 C -0.137 4.137 12 C 0.107 3.893 13 O -0.328 6.328 14 C 0.509 3.491 15 O -0.489 6.489 16 Cl 0.001 6.999 17 C -0.122 4.122 18 C 0.179 3.821 19 H 0.252 0.748 20 H 0.019 0.981 21 H 0.068 0.932 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.501 -11.830 7.585 14.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.243 4.243 3 Si 0.796 3.204 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.215 1.215 7 C -0.396 4.396 8 H 0.088 0.912 9 N -0.334 5.334 10 C 0.020 3.980 11 C -0.177 4.177 12 C 0.053 3.947 13 O -0.245 6.245 14 C 0.326 3.674 15 O -0.378 6.378 16 Cl 0.027 6.973 17 C -0.162 4.162 18 C 0.053 3.947 19 H 0.061 0.939 20 H 0.037 0.963 21 H 0.087 0.913 22 H 0.095 0.905 23 H 0.094 0.906 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.101 0.899 27 H 0.089 0.911 28 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 2.302 -11.839 7.321 14.109 hybrid contribution 0.060 0.781 -0.175 0.802 sum 2.362 -11.059 7.146 13.377 Atomic orbital electron populations 1.70157 1.06643 1.26059 1.55084 1.25811 0.96062 1.01544 1.00844 0.85198 0.78657 0.79725 0.76774 1.19072 1.22065 1.21503 1.19553 0.93012 0.85709 1.41299 0.91202 1.44400 1.35914 1.02460 1.50616 1.20972 0.98362 0.85435 0.93251 1.22425 0.96962 1.00418 0.97858 1.23135 0.99368 0.86592 0.85565 1.86579 1.76499 1.15564 1.45854 1.24287 0.74997 0.83353 0.84780 1.90936 1.43031 1.80013 1.23866 1.98556 1.94236 1.50355 1.54123 1.22260 1.02716 0.91490 0.99692 1.20626 0.88164 0.97602 0.88291 0.93876 0.96329 0.91307 0.90493 0.90568 0.90326 0.90918 0.89854 0.91129 0.97627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.48 11.20 21.65 0.24 -53.24 15 2 C -0.05 -2.54 4.92 84.86 0.42 -2.12 15 3 Si 0.97 43.51 29.59 68.60 2.03 45.54 15 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 15 5 H -0.29 -13.29 7.11 99.48 0.71 -12.58 15 6 H -0.29 -12.88 7.11 99.48 0.71 -12.18 15 7 C -0.27 -14.13 9.58 84.03 0.81 -13.33 15 8 H 0.07 3.61 7.89 -2.91 -0.02 3.59 15 9 N -0.61 -29.62 2.99 -699.08 -2.09 -31.72 15 10 C 0.15 5.86 6.50 86.36 0.56 6.42 15 11 C -0.14 -4.58 5.75 30.77 0.18 -4.41 15 12 C 0.11 3.56 2.42 30.73 0.07 3.64 15 13 O -0.33 -9.65 9.92 -52.14 -0.52 -10.17 15 14 C 0.51 14.11 8.63 113.37 0.98 15.09 15 15 O -0.49 -15.96 16.41 20.64 0.34 -15.62 15 16 Cl 0.00 0.03 29.32 -2.72 -0.08 -0.05 15 17 C -0.12 -4.38 5.74 30.67 0.18 -4.20 15 18 C 0.18 8.24 5.30 86.36 0.46 8.70 15 19 H 0.25 13.95 8.31 -92.71 -0.77 13.18 15 20 H 0.02 0.77 8.14 -2.39 -0.02 0.75 15 21 H 0.07 2.66 7.93 -2.39 -0.02 2.64 15 22 H 0.08 2.30 8.14 -2.39 -0.02 2.28 15 23 H 0.08 2.52 8.14 -2.39 -0.02 2.50 15 24 H 0.08 2.76 7.15 -2.39 -0.02 2.75 15 25 H 0.07 2.60 8.14 -2.39 -0.02 2.58 15 26 H 0.08 2.62 8.14 -2.39 -0.02 2.60 15 27 H 0.07 3.66 6.06 -2.39 -0.01 3.64 15 28 H 0.01 0.28 8.14 -2.39 -0.02 0.26 15 Total: -1.00 -58.86 255.79 4.73 -54.13 By element: Atomic # 1 Polarization: 0.16 SS G_CDS: 1.16 Total: 1.32 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 3.65 Total: 9.79 kcal Atomic # 7 Polarization: -83.10 SS G_CDS: -1.85 Total: -84.95 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.18 Total: -25.79 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -0.08 Total: -0.05 kcal Total: -58.86 4.73 -54.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958530060.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.236 kcal (2) G-P(sol) polarization free energy of solvation -58.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds