Wall clock time and date at job start Mon Mar 30 2020 03:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30537 * 1 3 3 Si 1.86800 * 120.00064 * 2 1 4 4 H 1.48503 * 109.47399 * 240.00201 * 3 2 1 5 5 H 1.48503 * 109.46848 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47237 * 119.99951 * 3 2 1 7 7 C 1.40440 * 120.00522 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00420 * 179.97438 * 7 2 1 9 9 C 1.39985 * 119.99554 * 0.02562 * 7 2 1 10 10 N 1.32329 * 125.11252 * 179.97438 * 9 7 2 11 11 C 1.34249 * 108.86287 * 180.02562 * 10 9 7 12 12 C 1.40112 * 133.44015 * 180.02562 * 11 10 9 13 13 C 1.38776 * 119.56474 * 179.97438 * 12 11 10 14 Xx 1.57005 * 119.88549 * 180.02562 * 13 12 11 15 14 O 1.42000 * 119.99958 * 359.97438 * 14 13 12 16 15 O 1.41997 * 120.00036 * 180.02562 * 14 13 12 17 16 C 1.40066 * 120.23074 * 0.02562 * 13 12 11 18 17 C 1.37687 * 120.49910 * 359.97438 * 17 13 12 19 18 C 1.38723 * 120.12942 * 0.02562 * 18 17 13 20 19 O 1.35054 * 133.54913 * 180.36839 * 19 18 17 21 20 H 0.96996 * 119.99904 * 0.02562 * 1 2 3 22 21 H 1.08002 * 120.21400 * 359.95381 * 12 11 10 23 22 H 0.96697 * 114.00033 * 180.02562 * 15 14 13 24 23 H 0.96699 * 114.00282 * 179.97438 * 16 14 13 25 24 H 1.07996 * 119.75377 * 180.02562 * 17 13 12 26 25 H 1.07995 * 119.94085 * 180.02562 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2394 1.6177 0.0000 4 1 3.0931 1.6965 -1.2125 5 1 1.2743 2.7464 0.0006 6 1 3.0932 1.6964 1.2125 7 6 2.0077 -1.2162 0.0005 8 1 3.0877 -1.2162 0.0001 9 6 1.3078 -2.4285 0.0005 10 7 1.8647 -3.6289 0.0005 11 6 0.8949 -4.5573 0.0000 12 6 0.9025 -5.9584 0.0002 13 6 -0.3008 -6.6496 -0.0001 14 8 0.9286 -8.9299 0.0012 15 8 -1.5309 -8.9295 0.0000 16 6 -1.5151 -5.9515 -0.0010 17 6 -1.5297 -4.5747 -0.0012 18 6 -0.3373 -3.8658 -0.0010 19 8 -0.0377 -2.5489 0.0052 20 1 -0.4850 0.8400 -0.0004 21 1 1.8388 -6.4968 0.0002 22 1 0.8274 -9.8915 0.0013 23 1 -1.4300 -9.8912 0.0002 24 1 -2.4470 -6.4973 -0.0008 25 1 -2.4711 -4.0457 -0.0015 There are 39 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 39 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396103269.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:30 Heat of formation + Delta-G solvation = 99.651152 kcal Electronic energy + Delta-G solvation = -13933.009127 eV Core-core repulsion = 11192.373626 eV Total energy + Delta-G solvation = -2740.635501 eV No. of doubly occupied orbitals = 39 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 222.060 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.52759 -39.42329 -37.22817 -36.18947 -32.43064 -31.90332 -31.21537 -30.72048 -29.27026 -24.71555 -24.12362 -23.20905 -21.00077 -19.09872 -18.32403 -18.00951 -17.73317 -16.42373 -15.70964 -15.41236 -14.88592 -14.51324 -14.17303 -14.14780 -14.00442 -13.73125 -13.46978 -13.18332 -12.91864 -12.16143 -11.94368 -11.68724 -10.50182 -10.17117 -10.14964 -9.36010 -9.31853 -9.28642 -8.44449 -5.48484 -2.21688 -0.74698 -0.48038 0.68814 1.05813 1.22579 1.54849 1.61529 1.93963 1.99433 2.12047 2.46472 2.84783 3.11894 3.53874 3.60124 3.70947 3.79138 4.31610 4.38360 4.51137 4.68652 4.75929 4.87185 4.94678 4.99765 6.14754 6.76287 7.58467 7.70098 Molecular weight = 222.06amu Principal moments of inertia in cm(-1) A = 0.068041 B = 0.006133 C = 0.005637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.414881 B = 4564.160905 C = 4965.732441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.052 4.052 3 Si 1.037 2.963 4 H -0.236 1.236 5 H -0.252 1.252 6 H -0.236 1.236 7 C -0.013 4.013 8 H 0.218 0.782 9 C 0.240 3.760 10 N -0.453 5.453 11 C 0.077 3.923 12 C -0.089 4.089 13 C 0.302 3.698 14 O -1.059 7.059 15 O -1.050 7.050 16 C -0.083 4.083 17 C -0.018 4.018 18 C 0.029 3.971 19 O -0.157 6.157 20 H 0.357 0.643 21 H 0.148 0.852 22 H 0.244 0.756 23 H 0.244 0.756 24 H 0.177 0.823 25 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.577 37.300 -0.011 37.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.236 5.236 2 C -0.277 4.277 3 Si 0.849 3.151 4 H -0.159 1.159 5 H -0.175 1.175 6 H -0.159 1.159 7 C -0.032 4.032 8 H 0.235 0.765 9 C 0.057 3.943 10 N -0.197 5.197 11 C -0.046 4.046 12 C -0.107 4.107 13 C 0.288 3.712 14 O -0.879 6.879 15 O -0.870 6.870 16 C -0.101 4.101 17 C -0.035 4.035 18 C -0.023 4.023 19 O -0.050 6.050 20 H 0.173 0.827 21 H 0.165 0.835 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.194 0.806 25 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 4.017 38.923 -0.008 39.129 hybrid contribution -0.521 -2.968 0.000 3.014 sum 3.497 35.954 -0.007 36.124 Atomic orbital electron populations 1.69544 1.10145 1.39013 1.04870 1.28340 0.96939 1.06693 0.95694 0.84280 0.78672 0.69483 0.82698 1.15884 1.17492 1.15897 1.22697 1.01470 0.84594 0.94412 0.76547 1.23064 0.77878 0.94496 0.98895 1.70916 1.31235 0.97872 1.19646 1.18871 0.91106 0.90039 1.04630 1.20050 0.99182 0.89513 1.01998 1.27948 0.94260 0.45032 1.03957 1.93397 1.81242 1.13317 1.99974 1.93363 1.80334 1.13353 1.99966 1.21478 0.97825 0.91373 0.99423 1.19934 0.97526 0.86255 0.99835 1.21058 0.96247 0.83044 1.01969 1.85076 1.24903 1.20662 1.74403 0.82664 0.83479 0.92915 0.92905 0.80608 0.75517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.60 -8.14 11.93 21.91 0.26 -7.88 15 2 C -0.05 -0.51 5.50 85.42 0.47 -0.04 15 3 Si 1.04 3.48 29.56 68.60 2.03 5.51 15 4 H -0.24 -0.89 7.11 99.48 0.71 -0.18 15 5 H -0.25 -1.05 7.11 99.48 0.71 -0.34 15 6 H -0.24 -0.89 7.11 99.48 0.71 -0.19 15 7 C -0.01 -0.17 9.46 23.23 0.22 0.05 15 8 H 0.22 1.04 7.85 -2.91 -0.02 1.02 15 9 C 0.24 5.68 7.60 85.04 0.65 6.33 15 10 N -0.45 -14.10 11.35 -302.18 -3.43 -17.53 15 11 C 0.08 2.81 7.21 39.98 0.29 3.09 15 12 C -0.09 -4.21 9.82 22.85 0.22 -3.99 15 13 C 0.30 16.77 9.79 22.84 0.22 17.00 15 14 O -1.06 -95.11 17.22 -127.47 -2.19 -97.30 15 15 O -1.05 -91.75 17.22 -127.47 -2.20 -93.94 15 16 C -0.08 -3.32 9.73 22.58 0.22 -3.10 15 17 C -0.02 -0.47 10.04 22.26 0.22 -0.25 15 18 C 0.03 0.86 7.43 23.14 0.17 1.03 15 19 O -0.16 -3.95 9.00 -17.93 -0.16 -4.11 15 20 H 0.36 2.98 8.29 -92.71 -0.77 2.21 15 21 H 0.15 7.84 7.75 -2.91 -0.02 7.82 15 22 H 0.24 21.91 8.90 -74.06 -0.66 21.25 15 23 H 0.24 21.53 8.90 -74.06 -0.66 20.87 15 24 H 0.18 7.30 7.75 -2.91 -0.02 7.28 15 25 H 0.23 3.27 8.06 -2.91 -0.02 3.24 15 Total: -1.00 -129.10 251.69 -3.06 -132.16 By element: Atomic # 1 Polarization: 63.03 SS G_CDS: -0.06 Total: 62.97 kcal Atomic # 6 Polarization: 17.43 SS G_CDS: 2.69 Total: 20.12 kcal Atomic # 7 Polarization: -22.24 SS G_CDS: -3.17 Total: -25.41 kcal Atomic # 8 Polarization: -190.80 SS G_CDS: -4.55 Total: -195.36 kcal Atomic # 14 Polarization: 3.48 SS G_CDS: 2.03 Total: 5.51 kcal Total: -129.10 -3.06 -132.16 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396103269.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.809 kcal (2) G-P(sol) polarization free energy of solvation -129.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -132.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds