Wall clock time and date at job start Mon Mar 30 2020 03:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.44768 * 2 1 4 4 O 1.43004 * 109.44407 * 119.93588 * 2 1 3 5 5 C 1.35936 * 116.69636 * 166.32754 * 4 2 1 6 6 C 1.38409 * 120.67871 * 147.22008 * 5 4 2 7 7 C 1.38301 * 119.88113 * 180.02562 * 6 5 4 8 8 C 1.38339 * 120.28150 * 0.02562 * 7 6 5 9 9 C 1.38221 * 120.22080 * 359.97205 * 8 7 6 10 10 C 1.38637 * 119.80466 * 359.97438 * 9 8 7 11 11 N 1.39935 * 120.74519 * 180.02562 * 10 9 8 12 12 C 1.37094 * 120.49365 * 15.40332 * 11 10 9 13 13 H 1.07997 * 119.99961 * 40.26371 * 12 11 10 14 14 C 1.38880 * 120.00348 * 220.26004 * 12 11 10 15 15 N 1.31432 * 119.99717 * 19.84130 * 14 12 11 16 16 Si 1.86802 * 120.00347 * 199.83687 * 14 12 11 17 17 H 1.48504 * 109.46560 * 94.75420 * 16 14 12 18 18 H 1.48502 * 109.47163 * 214.75351 * 16 14 12 19 19 H 1.48497 * 109.47088 * 334.75822 * 16 14 12 20 20 C 1.35083 * 119.01466 * 195.43225 * 11 10 9 21 21 O 1.21286 * 120.12929 * 181.73302 * 20 11 10 22 22 H 1.09004 * 109.47159 * 300.06458 * 1 2 3 23 23 H 1.08996 * 109.47235 * 60.06109 * 1 2 3 24 24 H 1.09000 * 109.47319 * 180.02562 * 1 2 3 25 25 H 1.08005 * 120.05793 * 359.80311 * 6 5 4 26 26 H 1.07998 * 119.86104 * 180.02562 * 7 6 5 27 27 H 1.07998 * 119.89260 * 179.97438 * 8 7 6 28 28 H 1.07997 * 120.09661 * 180.02562 * 9 8 7 29 29 H 0.96993 * 120.00146 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 8 2.0061 -0.6729 1.1686 5 6 3.3221 -1.0131 1.1840 6 6 4.0351 -1.0230 2.3702 7 6 5.3736 -1.3712 2.3667 8 6 6.0033 -1.7092 1.1823 9 6 5.2989 -1.7020 -0.0069 10 6 3.9566 -1.3550 -0.0106 11 7 3.2245 -1.3417 -1.2031 12 6 3.7112 -1.9609 -2.3252 13 1 4.2100 -2.9151 -2.2420 14 6 3.5628 -1.3611 -3.5690 15 7 3.3258 -0.0710 -3.6523 16 14 3.7002 -2.3878 -5.1235 17 1 2.3452 -2.8145 -5.5561 18 1 4.3307 -1.5784 -6.1971 19 1 4.5338 -3.5865 -4.8529 20 6 2.0313 -0.7091 -1.2322 21 8 1.3654 -0.7118 -2.2460 22 1 -0.3634 0.5149 0.8894 23 1 -0.3633 0.5129 -0.8905 24 1 -0.3634 -1.0276 0.0005 25 1 3.5480 -0.7558 3.2964 26 1 5.9295 -1.3792 3.2926 27 1 7.0489 -1.9797 1.1868 28 1 5.7924 -1.9666 -0.9303 29 1 3.2225 0.3480 -4.5209 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036928474.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:57 Heat of formation + Delta-G solvation = -51.982248 kcal Electronic energy + Delta-G solvation = -16549.669116 eV Core-core repulsion = 13823.720990 eV Total energy + Delta-G solvation = -2725.948126 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.18955 -39.42331 -38.46913 -36.39362 -34.09445 -32.85436 -30.91648 -29.85883 -27.77108 -24.88991 -24.01046 -23.20447 -20.62655 -19.85768 -19.18882 -18.08640 -17.29703 -16.69995 -16.08548 -15.86117 -15.45575 -15.22372 -15.00869 -14.68629 -13.95588 -13.82131 -13.58127 -13.19270 -13.05422 -12.87508 -12.79686 -12.65936 -12.18284 -11.98576 -11.80177 -11.40539 -10.68447 -10.22746 -9.41725 -8.73374 -8.38370 -6.25533 0.36816 0.50631 1.30818 1.38918 1.46807 1.82816 2.20516 2.38132 2.71835 2.91886 3.14153 3.48288 3.92702 3.96581 4.04888 4.30110 4.48688 4.60096 4.68545 4.76887 4.89212 5.07030 5.11711 5.27141 5.42464 5.49335 5.69455 5.90463 5.94359 6.34906 6.69198 6.76759 7.30342 7.80917 8.63015 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.025055 B = 0.011944 C = 0.008510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.258047 B = 2343.627013 C = 3289.525008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.082 3.918 3 H 0.086 0.914 4 O -0.312 6.312 5 C 0.024 3.976 6 C -0.107 4.107 7 C -0.127 4.127 8 C -0.106 4.106 9 C -0.145 4.145 10 C 0.076 3.924 11 N -0.408 5.408 12 C -0.381 4.381 13 H 0.092 0.908 14 C 0.022 3.978 15 N -0.867 5.867 16 Si 0.988 3.012 17 H -0.285 1.285 18 H -0.272 1.272 19 H -0.250 1.250 20 C 0.435 3.565 21 O -0.540 6.540 22 H 0.105 0.895 23 H 0.080 0.920 24 H 0.057 0.943 25 H 0.157 0.843 26 H 0.170 0.830 27 H 0.155 0.845 28 H 0.117 0.883 29 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.716 -0.674 10.793 11.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.022 3.978 3 H 0.103 0.897 4 O -0.227 6.227 5 C -0.022 4.022 6 C -0.125 4.125 7 C -0.146 4.146 8 C -0.124 4.124 9 C -0.167 4.167 10 C -0.021 4.021 11 N -0.119 5.119 12 C -0.506 4.506 13 H 0.109 0.891 14 C -0.185 4.185 15 N -0.501 5.501 16 Si 0.810 3.190 17 H -0.211 1.211 18 H -0.197 1.197 19 H -0.173 1.173 20 C 0.225 3.775 21 O -0.418 6.418 22 H 0.123 0.877 23 H 0.098 0.902 24 H 0.077 0.923 25 H 0.175 0.825 26 H 0.187 0.813 27 H 0.173 0.827 28 H 0.135 0.865 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.130 -0.541 10.176 10.410 hybrid contribution -0.002 -0.142 -1.575 1.582 sum 2.128 -0.683 8.600 8.886 Atomic orbital electron populations 1.21571 0.87855 1.03548 1.04304 1.22599 0.98809 0.95310 0.81090 0.89664 1.86039 1.22403 1.74698 1.39594 1.19094 0.84060 1.05245 0.93805 1.20778 0.94204 1.02084 0.95484 1.21263 0.93234 1.00842 0.99251 1.21310 1.00863 0.99290 0.90964 1.20871 0.91401 1.04302 1.00086 1.19243 0.94144 1.02076 0.86622 1.41544 1.14933 1.46838 1.08546 1.19424 1.43013 1.03723 0.84483 0.89064 1.26228 0.93874 0.95744 1.02685 1.69984 1.42471 1.11077 1.26525 0.85038 0.78190 0.78790 0.76964 1.21095 1.19745 1.17310 1.21683 0.81526 0.83654 0.90659 1.90484 1.56441 1.60410 1.34493 0.87660 0.90168 0.92339 0.82522 0.81291 0.82688 0.86511 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.01 9.14 71.98 0.66 -3.35 15 2 C 0.08 3.52 3.68 29.86 0.11 3.63 15 3 H 0.09 3.54 8.14 -2.39 -0.02 3.52 15 4 O -0.31 -12.79 10.09 -92.83 -0.94 -13.73 15 5 C 0.02 0.99 6.44 22.62 0.15 1.14 15 6 C -0.11 -3.25 10.00 22.33 0.22 -3.03 15 7 C -0.13 -3.27 10.04 22.31 0.22 -3.04 15 8 C -0.11 -3.15 10.04 22.29 0.22 -2.92 15 9 C -0.15 -5.94 9.32 22.36 0.21 -5.74 15 10 C 0.08 3.61 6.36 38.25 0.24 3.85 15 11 N -0.41 -22.66 2.77 -458.13 -1.27 -23.93 15 12 C -0.38 -21.94 8.03 84.02 0.67 -21.27 15 13 H 0.09 5.05 7.72 -2.91 -0.02 5.03 15 14 C 0.02 1.28 4.37 84.91 0.37 1.65 15 15 N -0.87 -52.79 11.56 21.65 0.25 -52.54 15 16 Si 0.99 45.17 29.60 68.60 2.03 47.20 15 17 H -0.28 -13.38 7.11 99.48 0.71 -12.68 15 18 H -0.27 -11.83 7.11 99.48 0.71 -11.13 15 19 H -0.25 -10.48 7.11 99.48 0.71 -9.78 15 20 C 0.44 23.95 6.64 87.62 0.58 24.53 15 21 O -0.54 -33.05 13.78 -3.05 -0.04 -33.09 15 22 H 0.10 2.76 8.14 -2.38 -0.02 2.74 15 23 H 0.08 2.85 7.85 -2.39 -0.02 2.84 15 24 H 0.06 2.08 8.14 -2.39 -0.02 2.06 15 25 H 0.16 3.72 8.06 -2.91 -0.02 3.70 15 26 H 0.17 2.76 8.06 -2.91 -0.02 2.74 15 27 H 0.16 3.42 8.06 -2.91 -0.02 3.39 15 28 H 0.12 5.05 7.11 -2.91 -0.02 5.03 15 29 H 0.27 15.51 8.31 -92.71 -0.77 14.74 15 Total: -1.00 -73.30 252.77 4.86 -68.44 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 1.16 Total: 12.20 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: 3.66 Total: -4.55 kcal Atomic # 7 Polarization: -75.45 SS G_CDS: -1.02 Total: -76.47 kcal Atomic # 8 Polarization: -45.84 SS G_CDS: -0.98 Total: -46.82 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -73.30 4.86 -68.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036928474.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.457 kcal (2) G-P(sol) polarization free energy of solvation -73.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds