Wall clock time and date at job start Mon Mar 30 2020 03:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.44720 * 2 1 4 4 O 1.42999 * 109.44606 * 240.05963 * 2 1 3 5 5 C 1.35933 * 116.69601 * 286.31765 * 4 2 1 6 6 C 1.38400 * 120.68412 * 147.16644 * 5 4 2 7 7 C 1.38290 * 119.88403 * 180.02562 * 6 5 4 8 8 C 1.38343 * 120.28327 * 359.97438 * 7 6 5 9 9 C 1.38216 * 120.21875 * 0.02562 * 8 7 6 10 10 C 1.38645 * 119.80527 * 359.97438 * 9 8 7 11 11 N 1.39942 * 120.75022 * 180.02562 * 10 9 8 12 12 C 1.37094 * 120.49326 * 15.45208 * 11 10 9 13 13 H 1.08004 * 120.00437 * 40.22837 * 12 11 10 14 14 C 1.38881 * 119.99499 * 220.23202 * 12 11 10 15 15 N 1.31422 * 120.00222 * 19.85218 * 14 12 11 16 16 Si 1.86802 * 119.99738 * 199.85184 * 14 12 11 17 17 H 1.48501 * 109.47108 * 94.75118 * 16 14 12 18 18 H 1.48498 * 109.47367 * 214.74997 * 16 14 12 19 19 H 1.48506 * 109.47086 * 334.75071 * 16 14 12 20 20 C 1.35078 * 119.01365 * 195.42498 * 11 10 9 21 21 O 1.21275 * 120.12922 * 181.71225 * 20 11 10 22 22 H 1.08998 * 109.47146 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47248 * 299.94071 * 1 2 3 24 24 H 1.09000 * 109.47161 * 59.93770 * 1 2 3 25 25 H 1.08006 * 120.05917 * 0.09168 * 6 5 4 26 26 H 1.08002 * 119.86243 * 180.02562 * 7 6 5 27 27 H 1.07996 * 119.89207 * 180.02562 * 8 7 6 28 28 H 1.08005 * 120.10106 * 180.02562 * 9 8 7 29 29 H 0.97000 * 120.00101 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 8 2.0061 -0.6730 -1.1685 5 6 1.8877 -2.0271 -1.1842 6 6 1.6586 -2.7023 -2.3704 7 6 1.5403 -4.0801 -2.3672 8 6 1.6505 -4.7870 -1.1832 9 6 1.8792 -4.1208 0.0061 10 6 1.9989 -2.7395 0.0102 11 7 2.2310 -2.0450 1.2028 12 6 2.6549 -2.7103 2.3240 13 1 3.3888 -3.4982 2.2395 14 6 2.1404 -2.3712 3.5686 15 7 1.0027 -1.7189 3.6539 16 14 3.0656 -2.8423 5.1216 17 1 3.9192 -1.7063 5.5531 18 1 2.0945 -3.1680 6.1968 19 1 3.9187 -4.0270 4.8494 20 6 2.0319 -0.7094 1.2325 21 8 2.2566 -0.0828 2.2463 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5129 0.8905 24 1 -0.3633 0.5148 -0.8894 25 1 1.5734 -2.1541 -3.2972 26 1 1.3620 -4.6067 -3.2932 27 1 1.5575 -5.8629 -1.1880 28 1 1.9653 -4.6746 0.9293 29 1 0.6432 -1.4823 4.5232 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036928475.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:00 Heat of formation + Delta-G solvation = -31.973848 kcal Electronic energy + Delta-G solvation = -16673.104833 eV Core-core repulsion = 13948.024337 eV Total energy + Delta-G solvation = -2725.080496 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.57808 -37.63773 -36.86550 -34.49591 -32.13679 -31.10501 -29.49222 -28.30730 -25.73770 -23.33377 -22.57609 -21.62289 -18.78466 -18.13294 -17.32860 -15.93963 -15.55723 -14.77607 -14.60645 -14.54143 -13.76140 -13.43888 -13.31383 -13.13934 -12.42508 -12.15167 -11.76626 -11.63935 -11.40926 -11.30210 -11.03569 -10.91176 -10.44929 -10.40936 -10.21762 -9.55667 -8.77855 -8.33653 -7.87414 -6.90015 -6.39582 -4.16398 1.91821 2.00499 3.17730 3.26180 3.27839 3.55394 4.05518 4.14958 4.47734 4.57915 5.03296 5.16383 5.46073 5.52899 5.56207 5.67291 5.89108 5.92655 6.14353 6.17505 6.36337 6.51388 6.59649 6.84219 7.04042 7.15046 7.35207 7.39716 7.76076 8.08346 8.63491 8.72167 9.26260 9.73532 10.66102 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.028096 B = 0.011580 C = 0.008930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.356753 B = 2417.286113 C = 3134.795658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.076 3.924 3 H 0.130 0.870 4 O -0.313 6.313 5 C 0.046 3.954 6 C -0.113 4.113 7 C -0.156 4.156 8 C -0.114 4.114 9 C -0.132 4.132 10 C 0.126 3.874 11 N -0.383 5.383 12 C -0.365 4.365 13 H 0.094 0.906 14 C 0.072 3.928 15 N -0.826 5.826 16 Si 0.923 3.077 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.269 1.269 20 C 0.460 3.540 21 O -0.496 6.496 22 H 0.062 0.938 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.122 0.878 26 H 0.117 0.883 27 H 0.116 0.884 28 H 0.133 0.867 29 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.101 -2.051 -8.089 8.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.017 3.983 3 H 0.147 0.853 4 O -0.228 6.228 5 C -0.001 4.001 6 C -0.132 4.132 7 C -0.176 4.176 8 C -0.133 4.133 9 C -0.154 4.154 10 C 0.025 3.975 11 N -0.092 5.092 12 C -0.490 4.490 13 H 0.111 0.889 14 C -0.140 4.140 15 N -0.457 5.457 16 Si 0.749 3.251 17 H -0.200 1.200 18 H -0.209 1.209 19 H -0.193 1.193 20 C 0.248 3.752 21 O -0.371 6.371 22 H 0.081 0.919 23 H 0.095 0.905 24 H 0.085 0.915 25 H 0.140 0.860 26 H 0.135 0.865 27 H 0.134 0.866 28 H 0.151 0.849 29 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.031 -1.402 -7.402 7.604 hybrid contribution 0.171 -0.239 1.014 1.056 sum -0.860 -1.641 -6.388 6.651 Atomic orbital electron populations 1.22206 0.93988 1.03441 1.02708 1.22862 0.95738 0.96929 0.82803 0.85275 1.86109 1.79510 1.16523 1.40669 1.18591 1.05919 0.82465 0.93160 1.20256 1.03045 0.94126 0.95803 1.20612 1.06128 0.93019 0.97836 1.20855 1.01080 0.99146 0.92205 1.20719 1.03674 0.92245 0.98757 1.18812 0.98589 0.93134 0.86928 1.41348 1.55198 1.04909 1.07723 1.19197 1.24276 1.22280 0.83265 0.88860 1.25288 0.93937 0.95146 0.99640 1.69878 1.15448 1.34276 1.26107 0.86007 0.79462 0.78874 0.80752 1.20000 1.20879 1.19302 1.20753 0.82305 0.82724 0.89424 1.90561 1.48939 1.64799 1.32759 0.91860 0.90506 0.91527 0.85995 0.86542 0.86605 0.84876 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 9.30 37.16 0.35 -2.74 15 2 C 0.08 1.60 3.81 -27.83 -0.11 1.49 15 3 H 0.13 2.39 8.14 -51.93 -0.42 1.97 15 4 O -0.31 -6.46 10.18 -19.53 -0.20 -6.66 15 5 C 0.05 0.94 5.85 -39.04 -0.23 0.72 15 6 C -0.11 -1.95 10.00 -39.50 -0.39 -2.34 15 7 C -0.16 -2.44 10.04 -39.52 -0.40 -2.84 15 8 C -0.11 -1.91 10.04 -39.55 -0.40 -2.30 15 9 C -0.13 -2.72 9.32 -39.44 -0.37 -3.09 15 10 C 0.13 2.89 6.36 -83.53 -0.53 2.36 15 11 N -0.38 -10.10 2.77 -58.77 -0.16 -10.26 15 12 C -0.36 -10.00 8.03 -14.96 -0.12 -10.12 15 13 H 0.09 2.45 7.72 -52.48 -0.41 2.05 15 14 C 0.07 1.98 4.37 -17.49 -0.08 1.91 15 15 N -0.83 -23.76 11.56 55.49 0.64 -23.12 15 16 Si 0.92 21.24 29.60 -169.99 -5.03 16.21 15 17 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 19 H -0.27 -5.88 7.11 56.52 0.40 -5.48 15 20 C 0.46 12.02 6.19 -10.80 -0.07 11.96 15 21 O -0.50 -14.52 14.72 5.56 0.08 -14.43 15 22 H 0.06 1.28 7.81 -51.93 -0.41 0.88 15 23 H 0.08 1.45 8.14 -51.93 -0.42 1.03 15 24 H 0.07 1.02 8.14 -51.93 -0.42 0.59 15 25 H 0.12 1.79 8.06 -52.48 -0.42 1.36 15 26 H 0.12 1.43 8.06 -52.49 -0.42 1.01 15 27 H 0.12 1.58 8.06 -52.49 -0.42 1.16 15 28 H 0.13 2.78 7.11 -52.48 -0.37 2.41 15 29 H 0.27 7.39 8.31 -40.82 -0.34 7.05 15 LS Contribution 253.00 15.07 3.81 3.81 Total: -1.00 -31.38 253.00 -6.05 -37.44 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -2.86 Total: 2.01 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -2.34 Total: -5.00 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: 0.48 Total: -33.38 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.12 Total: -21.10 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -31.38 -6.05 -37.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036928475.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.461 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds