Wall clock time and date at job start Mon Mar 30 2020 03:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.44720 * 2 1 4 4 O 1.42999 * 109.44606 * 240.05963 * 2 1 3 5 5 C 1.35933 * 116.69601 * 286.31765 * 4 2 1 6 6 C 1.38400 * 120.68412 * 147.16644 * 5 4 2 7 7 C 1.38290 * 119.88403 * 180.02562 * 6 5 4 8 8 C 1.38343 * 120.28327 * 359.97438 * 7 6 5 9 9 C 1.38216 * 120.21875 * 0.02562 * 8 7 6 10 10 C 1.38645 * 119.80527 * 359.97438 * 9 8 7 11 11 N 1.39942 * 120.75022 * 180.02562 * 10 9 8 12 12 C 1.37094 * 120.49326 * 15.45208 * 11 10 9 13 13 H 1.08004 * 120.00437 * 40.22837 * 12 11 10 14 14 C 1.38881 * 119.99499 * 220.23202 * 12 11 10 15 15 N 1.31422 * 120.00222 * 19.85218 * 14 12 11 16 16 Si 1.86802 * 119.99738 * 199.85184 * 14 12 11 17 17 H 1.48501 * 109.47108 * 94.75118 * 16 14 12 18 18 H 1.48498 * 109.47367 * 214.74997 * 16 14 12 19 19 H 1.48506 * 109.47086 * 334.75071 * 16 14 12 20 20 C 1.35078 * 119.01365 * 195.42498 * 11 10 9 21 21 O 1.21275 * 120.12922 * 181.71225 * 20 11 10 22 22 H 1.08998 * 109.47146 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47248 * 299.94071 * 1 2 3 24 24 H 1.09000 * 109.47161 * 59.93770 * 1 2 3 25 25 H 1.08006 * 120.05917 * 0.09168 * 6 5 4 26 26 H 1.08002 * 119.86243 * 180.02562 * 7 6 5 27 27 H 1.07996 * 119.89207 * 180.02562 * 8 7 6 28 28 H 1.08005 * 120.10106 * 180.02562 * 9 8 7 29 29 H 0.97000 * 120.00101 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 8 2.0061 -0.6730 -1.1685 5 6 1.8877 -2.0271 -1.1842 6 6 1.6586 -2.7023 -2.3704 7 6 1.5403 -4.0801 -2.3672 8 6 1.6505 -4.7870 -1.1832 9 6 1.8792 -4.1208 0.0061 10 6 1.9989 -2.7395 0.0102 11 7 2.2310 -2.0450 1.2028 12 6 2.6549 -2.7103 2.3240 13 1 3.3888 -3.4982 2.2395 14 6 2.1404 -2.3712 3.5686 15 7 1.0027 -1.7189 3.6539 16 14 3.0656 -2.8423 5.1216 17 1 3.9192 -1.7063 5.5531 18 1 2.0945 -3.1680 6.1968 19 1 3.9187 -4.0270 4.8494 20 6 2.0319 -0.7094 1.2325 21 8 2.2566 -0.0828 2.2463 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5129 0.8905 24 1 -0.3633 0.5148 -0.8894 25 1 1.5734 -2.1541 -3.2972 26 1 1.3620 -4.6067 -3.2932 27 1 1.5575 -5.8629 -1.1880 28 1 1.9653 -4.6746 0.9293 29 1 0.6432 -1.4823 4.5232 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036928475.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:00 Heat of formation + Delta-G solvation = -52.566137 kcal Electronic energy + Delta-G solvation = -16673.997782 eV Core-core repulsion = 13948.024337 eV Total energy + Delta-G solvation = -2725.973445 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.25262 -39.38337 -38.46685 -36.33878 -34.09354 -32.70336 -31.00166 -29.92461 -27.63211 -25.00823 -24.23717 -23.20330 -20.52391 -19.80202 -19.10025 -17.63121 -17.36062 -16.49579 -16.31951 -16.05235 -15.63633 -15.18095 -14.94859 -14.67657 -14.02994 -13.72466 -13.59390 -13.30744 -13.06426 -12.90365 -12.80119 -12.67066 -12.18090 -11.97921 -11.80970 -11.39697 -10.66415 -10.21279 -9.40253 -8.71097 -8.37153 -6.24288 0.39114 0.52236 1.30955 1.39115 1.46710 1.84984 2.21991 2.42282 2.74165 2.94687 3.15921 3.46534 3.93887 3.95537 4.07616 4.31129 4.46802 4.60064 4.65013 4.69775 4.88498 4.99980 5.10912 5.28136 5.44271 5.50994 5.71133 5.91512 5.95350 6.36375 6.70359 6.78080 7.31859 7.81872 8.63621 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.028096 B = 0.011580 C = 0.008930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.356753 B = 2417.286113 C = 3134.795658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.083 3.917 3 H 0.151 0.849 4 O -0.311 6.311 5 C 0.030 3.970 6 C -0.108 4.108 7 C -0.127 4.127 8 C -0.107 4.107 9 C -0.146 4.146 10 C 0.079 3.921 11 N -0.403 5.403 12 C -0.382 4.382 13 H 0.091 0.909 14 C 0.023 3.977 15 N -0.863 5.863 16 Si 0.986 3.014 17 H -0.286 1.286 18 H -0.272 1.272 19 H -0.250 1.250 20 C 0.438 3.562 21 O -0.551 6.551 22 H 0.041 0.959 23 H 0.067 0.933 24 H 0.108 0.892 25 H 0.157 0.843 26 H 0.168 0.832 27 H 0.154 0.846 28 H 0.116 0.884 29 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.364 -3.525 -10.961 11.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.023 3.977 3 H 0.168 0.832 4 O -0.226 6.226 5 C -0.016 4.016 6 C -0.127 4.127 7 C -0.146 4.146 8 C -0.126 4.126 9 C -0.168 4.168 10 C -0.018 4.018 11 N -0.114 5.114 12 C -0.508 4.508 13 H 0.109 0.891 14 C -0.185 4.185 15 N -0.496 5.496 16 Si 0.808 3.192 17 H -0.212 1.212 18 H -0.197 1.197 19 H -0.173 1.173 20 C 0.228 3.772 21 O -0.430 6.430 22 H 0.060 0.940 23 H 0.086 0.914 24 H 0.126 0.874 25 H 0.174 0.826 26 H 0.186 0.814 27 H 0.172 0.828 28 H 0.134 0.866 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.298 -2.942 -10.347 10.835 hybrid contribution 0.242 0.059 1.637 1.655 sum -1.056 -2.882 -8.711 9.236 Atomic orbital electron populations 1.22117 0.92225 1.02448 1.04234 1.22860 0.96992 0.97086 0.80739 0.83159 1.86095 1.79863 1.16764 1.39863 1.19017 1.06505 0.82450 0.93636 1.20779 1.01229 0.95095 0.95581 1.21251 1.01766 0.92411 0.99188 1.21291 0.99152 1.01104 0.91011 1.20872 1.04315 0.91556 1.00023 1.19204 1.01763 0.94284 0.86593 1.41486 1.55953 1.05397 1.08529 1.19419 1.24480 1.22355 0.84536 0.89096 1.26201 0.94540 0.95174 1.02606 1.69977 1.17032 1.36216 1.26363 0.85066 0.78358 0.78622 0.77110 1.21203 1.19744 1.17340 1.21672 0.82039 0.82886 0.90591 1.90496 1.51774 1.65806 1.34936 0.94016 0.91434 0.87354 0.82553 0.81413 0.82834 0.86611 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.62 9.30 71.98 0.67 -4.96 15 2 C 0.08 3.47 3.81 29.88 0.11 3.59 15 3 H 0.15 5.55 8.14 -2.39 -0.02 5.53 15 4 O -0.31 -12.45 10.18 -92.80 -0.94 -13.40 15 5 C 0.03 1.21 5.85 22.62 0.13 1.34 15 6 C -0.11 -3.24 10.00 22.32 0.22 -3.01 15 7 C -0.13 -3.24 10.04 22.31 0.22 -3.02 15 8 C -0.11 -3.16 10.04 22.29 0.22 -2.94 15 9 C -0.15 -5.94 9.32 22.36 0.21 -5.73 15 10 C 0.08 3.66 6.36 38.25 0.24 3.90 15 11 N -0.40 -22.14 2.77 -458.07 -1.27 -23.41 15 12 C -0.38 -21.93 8.03 84.02 0.67 -21.25 15 13 H 0.09 5.02 7.72 -2.91 -0.02 4.99 15 14 C 0.02 1.30 4.37 84.91 0.37 1.67 15 15 N -0.86 -52.17 11.56 21.65 0.25 -51.91 15 16 Si 0.99 45.15 29.60 68.60 2.03 47.18 15 17 H -0.29 -13.49 7.11 99.48 0.71 -12.79 15 18 H -0.27 -11.85 7.11 99.48 0.71 -11.14 15 19 H -0.25 -10.52 7.11 99.48 0.71 -9.82 15 20 C 0.44 23.91 6.19 87.64 0.54 24.45 15 21 O -0.55 -34.11 14.72 -3.01 -0.04 -34.15 15 22 H 0.04 1.69 7.81 -2.39 -0.02 1.67 15 23 H 0.07 2.60 8.14 -2.39 -0.02 2.58 15 24 H 0.11 3.03 8.14 -2.39 -0.02 3.01 15 25 H 0.16 3.64 8.06 -2.91 -0.02 3.62 15 26 H 0.17 2.72 8.06 -2.91 -0.02 2.70 15 27 H 0.15 3.38 8.06 -2.91 -0.02 3.36 15 28 H 0.12 4.99 7.11 -2.91 -0.02 4.97 15 29 H 0.27 15.40 8.31 -92.71 -0.77 14.63 15 Total: -1.00 -73.14 253.00 4.81 -68.33 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 1.16 Total: 13.32 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: 3.63 Total: -5.96 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: -1.02 Total: -75.32 kcal Atomic # 8 Polarization: -46.56 SS G_CDS: -0.99 Total: -47.55 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -73.14 4.81 -68.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036928475.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.760 kcal (2) G-P(sol) polarization free energy of solvation -73.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds