Wall clock time and date at job start Mon Mar 30 2020 03:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35743 * 117.00449 * 2 1 4 4 C 1.38505 * 119.44982 * 0.02562 * 3 2 1 5 5 C 1.39370 * 120.03569 * 179.97438 * 4 3 2 6 6 C 1.43202 * 120.49407 * 180.02562 * 5 4 3 7 7 N 5.83819 * 80.82435 * 0.02562 * 2 1 3 8 8 C 1.46637 * 119.01635 * 0.02562 * 5 4 3 9 9 C 1.40613 * 120.52634 * 179.97438 * 8 5 4 10 10 H 1.08007 * 119.99577 * 329.58807 * 9 8 5 11 11 C 1.40186 * 120.00309 * 149.58901 * 9 8 5 12 12 N 1.30710 * 119.99885 * 162.48130 * 11 9 8 13 13 Si 1.86796 * 119.99842 * 342.48086 * 11 9 8 14 14 H 1.48502 * 109.46879 * 95.42781 * 13 11 9 15 15 H 1.48499 * 109.46924 * 215.42812 * 13 11 9 16 16 H 1.48497 * 109.47074 * 335.42638 * 13 11 9 17 17 C 1.40801 * 118.94944 * 359.97438 * 8 5 4 18 18 C 1.37702 * 119.87809 * 359.73528 * 17 8 5 19 19 O 1.35857 * 119.48642 * 180.28361 * 18 17 8 20 20 C 1.42894 * 117.00277 * 0.25894 * 19 18 17 21 21 H 1.08995 * 109.47773 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.46850 * 59.99300 * 1 2 3 23 23 H 1.09003 * 109.47594 * 300.00250 * 1 2 3 24 24 H 1.08000 * 119.98254 * 359.97438 * 4 3 2 25 25 H 0.97002 * 119.99918 * 179.97438 * 12 11 9 26 26 H 1.08000 * 120.05876 * 180.02562 * 17 8 5 27 27 H 1.09000 * 109.47077 * 299.99955 * 20 19 18 28 28 H 1.09000 * 109.47025 * 59.99973 * 20 19 18 29 29 H 1.09005 * 109.47155 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.2800 2.3638 0.0005 5 6 1.9001 3.6120 0.0011 6 6 1.1183 4.8118 0.0022 7 7 0.4980 5.7635 0.0026 8 6 3.3649 3.6784 0.0005 9 6 4.0235 4.9208 0.0005 10 1 3.5635 5.7758 -0.4727 11 6 5.2771 5.0496 0.6145 12 7 6.0402 6.0730 0.3338 13 14 5.8569 3.7588 1.8339 14 1 6.7073 2.7630 1.1336 15 1 6.6442 4.4126 2.9099 16 1 4.6801 3.0747 2.4275 17 6 4.1016 2.4785 0.0000 18 6 3.4430 1.2692 0.0055 19 8 4.1617 0.1163 0.0108 20 6 5.5853 0.2393 0.0160 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5140 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 0.2020 2.2967 0.0005 25 1 6.9075 6.1624 0.7590 26 1 5.1812 2.5065 -0.0001 27 1 5.9065 0.7806 -0.8740 28 1 5.8996 0.7845 0.9060 29 1 6.0358 -0.7533 0.0203 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044369493.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:46 Heat of formation + Delta-G solvation = -28.208925 kcal Electronic energy + Delta-G solvation = -15942.385284 eV Core-core repulsion = 13217.468047 eV Total energy + Delta-G solvation = -2724.917237 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.60028 -37.77094 -36.56323 -34.92735 -33.63319 -30.36395 -29.68764 -27.26842 -26.76864 -25.10998 -21.88283 -21.30255 -18.38622 -18.07468 -16.97505 -15.77694 -15.60540 -15.38735 -14.89869 -14.68848 -14.04040 -13.61303 -13.37226 -12.79307 -12.62092 -12.42245 -11.91019 -11.85362 -11.64065 -11.31701 -11.11482 -11.06730 -10.70462 -10.60429 -10.26891 -10.06889 -9.85790 -9.30901 -7.90810 -7.31702 -7.09351 -4.79818 1.83827 2.34832 2.83349 2.98511 3.09660 3.68372 3.79406 3.86180 3.89899 4.09292 4.36321 5.11064 5.20679 5.44883 5.53315 5.57225 5.60008 5.60802 5.81755 5.85548 6.18420 6.21795 6.29757 6.55306 6.85793 6.97302 7.35524 7.43368 7.74932 7.94856 8.10061 8.36189 8.45862 8.70094 9.67903 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.020038 B = 0.012715 C = 0.008261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.022517 B = 2201.598469 C = 3388.738137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.318 6.318 3 C -0.035 4.035 4 C -0.067 4.067 5 C -0.167 4.167 6 C 0.299 3.701 7 N -0.496 5.496 8 C 0.138 3.862 9 C -0.416 4.416 10 H 0.099 0.901 11 C 0.084 3.916 12 N -0.777 5.777 13 Si 0.907 3.093 14 H -0.263 1.263 15 H -0.283 1.283 16 H -0.236 1.236 17 C -0.298 4.298 18 C 0.177 3.823 19 O -0.314 6.314 20 C 0.025 3.975 21 H 0.086 0.914 22 H 0.044 0.956 23 H 0.044 0.956 24 H 0.119 0.881 25 H 0.293 0.707 26 H 0.124 0.876 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.062 -10.303 1.134 10.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.233 6.233 3 C -0.079 4.079 4 C -0.088 4.088 5 C -0.173 4.173 6 C -0.011 4.011 7 N -0.175 5.175 8 C 0.132 3.868 9 C -0.442 4.442 10 H 0.117 0.883 11 C -0.140 4.140 12 N -0.398 5.398 13 Si 0.732 3.268 14 H -0.189 1.189 15 H -0.210 1.210 16 H -0.159 1.159 17 C -0.318 4.318 18 C 0.131 3.869 19 O -0.227 6.227 20 C -0.070 4.070 21 H 0.104 0.896 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.137 0.863 25 H 0.104 0.896 26 H 0.141 0.859 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.772 -8.997 1.137 9.101 hybrid contribution 0.718 -0.319 0.434 0.897 sum -0.054 -9.316 1.571 9.448 Atomic orbital electron populations 1.22804 0.80689 1.02319 1.00447 1.85967 1.19106 1.26699 1.91530 1.17302 0.88230 0.84073 1.18253 1.20508 0.97895 0.90346 1.00094 1.16497 0.90830 0.85881 1.24133 1.25511 0.91643 0.92427 0.91519 1.81045 1.11410 1.10620 1.14448 1.18151 0.88719 0.92302 0.87636 1.19545 0.99920 0.96375 1.28385 0.88310 1.26356 0.94833 0.96392 0.96441 1.69616 1.08959 1.27624 1.33615 0.86390 0.80457 0.80097 0.79870 1.18913 1.20972 1.15871 1.20836 0.98842 0.90887 1.21267 1.18107 0.87953 0.84797 0.96081 1.86042 1.18392 1.29491 1.88756 1.23057 0.79656 1.02831 1.01492 0.89578 0.93701 0.93708 0.86279 0.89570 0.85865 0.92680 0.93208 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.79 101.05 0.99 1.44 15 2 O -0.32 -5.94 10.22 -34.44 -0.35 -6.29 15 3 C -0.03 -0.71 6.71 -38.86 -0.26 -0.97 15 4 C -0.07 -1.33 8.72 -39.06 -0.34 -1.67 15 5 C -0.17 -3.74 5.94 -104.16 -0.62 -4.36 15 6 C 0.30 6.91 14.36 -22.47 -0.32 6.58 15 7 N -0.50 -11.85 18.54 41.84 0.78 -11.08 15 8 C 0.14 3.25 5.26 -104.64 -0.55 2.70 15 9 C -0.42 -10.48 9.01 -37.95 -0.34 -10.82 15 10 H 0.10 2.71 7.66 -52.48 -0.40 2.31 15 11 C 0.08 2.00 5.42 -17.30 -0.09 1.91 15 12 N -0.78 -18.97 13.92 55.56 0.77 -18.20 15 13 Si 0.91 18.52 23.96 -169.99 -4.07 14.45 15 14 H -0.26 -4.90 5.96 56.52 0.34 -4.56 15 15 H -0.28 -5.60 7.11 56.52 0.40 -5.20 15 16 H -0.24 -4.99 6.84 56.52 0.39 -4.61 15 17 C -0.30 -6.53 6.11 -38.81 -0.24 -6.76 15 18 C 0.18 3.73 6.69 -39.16 -0.26 3.47 15 19 O -0.31 -6.08 10.22 -34.79 -0.36 -6.43 15 20 C 0.03 0.38 9.79 101.05 0.99 1.37 15 21 H 0.09 0.93 8.14 -51.93 -0.42 0.51 15 22 H 0.04 0.57 7.63 -51.93 -0.40 0.17 15 23 H 0.04 0.57 7.63 -51.93 -0.40 0.18 15 24 H 0.12 2.03 6.20 -52.49 -0.33 1.70 15 25 H 0.29 6.37 8.29 -40.82 -0.34 6.03 15 26 H 0.12 2.58 2.96 -52.49 -0.16 2.42 15 27 H 0.05 0.82 7.62 -51.93 -0.40 0.42 15 28 H 0.05 0.77 6.26 -51.93 -0.33 0.45 15 29 H 0.09 1.09 8.14 -51.93 -0.42 0.66 15 LS Contribution 255.09 15.07 3.84 3.84 Total: -1.00 -27.43 255.09 -2.89 -30.32 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -2.45 Total: 0.49 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -1.05 Total: -7.10 kcal Atomic # 7 Polarization: -30.83 SS G_CDS: 1.55 Total: -29.28 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -0.71 Total: -12.72 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -4.07 Total: 14.45 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -27.43 -2.89 -30.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044369493.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.109 kcal (2) G-P(sol) polarization free energy of solvation -27.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds