Wall clock time and date at job start Mon Mar 30 2020 03:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35743 * 117.00449 * 2 1 4 4 C 1.38505 * 119.44982 * 0.02562 * 3 2 1 5 5 C 1.39370 * 120.03569 * 179.97438 * 4 3 2 6 6 C 1.43202 * 120.49407 * 180.02562 * 5 4 3 7 7 N 5.83819 * 80.82435 * 0.02562 * 2 1 3 8 8 C 1.46637 * 119.01635 * 0.02562 * 5 4 3 9 9 C 1.40613 * 120.52634 * 179.97438 * 8 5 4 10 10 H 1.08007 * 119.99577 * 329.58807 * 9 8 5 11 11 C 1.40186 * 120.00309 * 149.58901 * 9 8 5 12 12 N 1.30710 * 119.99885 * 162.48130 * 11 9 8 13 13 Si 1.86796 * 119.99842 * 342.48086 * 11 9 8 14 14 H 1.48502 * 109.46879 * 95.42781 * 13 11 9 15 15 H 1.48499 * 109.46924 * 215.42812 * 13 11 9 16 16 H 1.48497 * 109.47074 * 335.42638 * 13 11 9 17 17 C 1.40801 * 118.94944 * 359.97438 * 8 5 4 18 18 C 1.37702 * 119.87809 * 359.73528 * 17 8 5 19 19 O 1.35857 * 119.48642 * 180.28361 * 18 17 8 20 20 C 1.42894 * 117.00277 * 0.25894 * 19 18 17 21 21 H 1.08995 * 109.47773 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.46850 * 59.99300 * 1 2 3 23 23 H 1.09003 * 109.47594 * 300.00250 * 1 2 3 24 24 H 1.08000 * 119.98254 * 359.97438 * 4 3 2 25 25 H 0.97002 * 119.99918 * 179.97438 * 12 11 9 26 26 H 1.08000 * 120.05876 * 180.02562 * 17 8 5 27 27 H 1.09000 * 109.47077 * 299.99955 * 20 19 18 28 28 H 1.09000 * 109.47025 * 59.99973 * 20 19 18 29 29 H 1.09005 * 109.47155 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.2800 2.3638 0.0005 5 6 1.9001 3.6120 0.0011 6 6 1.1183 4.8118 0.0022 7 7 0.4980 5.7635 0.0026 8 6 3.3649 3.6784 0.0005 9 6 4.0235 4.9208 0.0005 10 1 3.5635 5.7758 -0.4727 11 6 5.2771 5.0496 0.6145 12 7 6.0402 6.0730 0.3338 13 14 5.8569 3.7588 1.8339 14 1 6.7073 2.7630 1.1336 15 1 6.6442 4.4126 2.9099 16 1 4.6801 3.0747 2.4275 17 6 4.1016 2.4785 0.0000 18 6 3.4430 1.2692 0.0055 19 8 4.1617 0.1163 0.0108 20 6 5.5853 0.2393 0.0160 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5140 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 0.2020 2.2967 0.0005 25 1 6.9075 6.1624 0.7590 26 1 5.1812 2.5065 -0.0001 27 1 5.9065 0.7806 -0.8740 28 1 5.8996 0.7845 0.9060 29 1 6.0358 -0.7533 0.0203 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044369493.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:45 Heat of formation + Delta-G solvation = -45.690767 kcal Electronic energy + Delta-G solvation = -15943.143353 eV Core-core repulsion = 13217.468047 eV Total energy + Delta-G solvation = -2725.675306 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.15461 -39.20286 -38.24959 -36.73674 -35.36574 -32.05089 -31.28964 -28.68847 -27.95642 -26.78167 -23.50960 -22.95067 -19.99967 -19.75289 -18.57580 -17.39671 -17.14329 -16.81344 -16.45103 -15.98206 -15.61737 -15.08324 -14.97560 -14.54413 -14.27521 -14.14586 -13.55806 -13.37958 -13.13409 -12.82425 -12.71866 -12.63715 -12.09622 -11.92289 -11.90962 -11.73501 -11.48018 -10.95909 -9.56784 -9.08306 -8.74454 -6.62946 0.12484 0.66985 1.20348 1.37242 1.47272 1.95468 2.02812 2.18053 2.44949 2.55962 2.72385 3.34156 3.46267 3.99481 4.32579 4.40420 4.47250 4.53761 4.58005 4.63570 4.67772 4.75194 4.87099 4.91190 5.17256 5.29076 5.60980 5.76149 6.01198 6.27667 6.39157 6.52522 6.84606 6.94590 7.97958 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.020038 B = 0.012715 C = 0.008261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.022517 B = 2201.598469 C = 3388.738137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.330 6.330 3 C -0.023 4.023 4 C -0.060 4.060 5 C -0.184 4.184 6 C 0.306 3.694 7 N -0.519 5.519 8 C 0.130 3.870 9 C -0.453 4.453 10 H 0.057 0.943 11 C 0.052 3.948 12 N -0.817 5.817 13 Si 0.951 3.049 14 H -0.231 1.231 15 H -0.272 1.272 16 H -0.248 1.248 17 C -0.299 4.299 18 C 0.173 3.827 19 O -0.319 6.319 20 C 0.013 3.987 21 H 0.117 0.883 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.150 0.850 25 H 0.304 0.696 26 H 0.132 0.868 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.115 -13.298 1.670 13.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.246 6.246 3 C -0.068 4.068 4 C -0.081 4.081 5 C -0.190 4.190 6 C -0.004 4.004 7 N -0.198 5.198 8 C 0.124 3.876 9 C -0.480 4.480 10 H 0.076 0.924 11 C -0.167 4.167 12 N -0.441 5.441 13 Si 0.771 3.229 14 H -0.155 1.155 15 H -0.198 1.198 16 H -0.171 1.171 17 C -0.319 4.319 18 C 0.126 3.874 19 O -0.232 6.232 20 C -0.082 4.082 21 H 0.136 0.864 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.168 0.832 25 H 0.115 0.885 26 H 0.150 0.850 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.827 -12.005 1.657 12.147 hybrid contribution 0.598 0.424 0.216 0.765 sum -0.228 -11.581 1.873 11.733 Atomic orbital electron populations 1.23197 0.77877 1.04886 1.01426 1.85968 1.21983 1.25501 1.91140 1.17513 0.88439 0.84948 1.15876 1.20734 0.99476 0.89048 0.98858 1.16688 0.90536 0.86551 1.25216 1.25731 0.91239 0.92447 0.90958 1.81025 1.12373 1.10988 1.15441 1.18278 0.89440 0.92351 0.87528 1.19414 1.01435 0.96015 1.31167 0.92438 1.27027 0.94348 0.98124 0.97238 1.69633 1.09920 1.29321 1.35189 0.85753 0.80190 0.78648 0.78280 1.15471 1.19849 1.17079 1.20877 0.99321 0.90554 1.21165 1.18285 0.88757 0.85123 0.95271 1.86047 1.20467 1.28481 1.88255 1.23430 0.77538 1.05555 1.01640 0.86439 0.92645 0.92662 0.83243 0.88516 0.85036 0.92298 0.93207 0.84991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.79 113.37 1.11 1.59 15 2 O -0.33 -11.17 10.22 -75.86 -0.78 -11.95 15 3 C -0.02 -0.88 6.71 22.73 0.15 -0.73 15 4 C -0.06 -2.26 8.72 22.61 0.20 -2.06 15 5 C -0.18 -8.17 5.94 -19.57 -0.12 -8.29 15 6 C 0.31 14.30 14.36 88.33 1.27 15.57 15 7 N -0.52 -25.20 18.54 19.00 0.35 -24.84 15 8 C 0.13 6.16 5.26 -19.88 -0.10 6.05 15 9 C -0.45 -23.79 9.01 23.32 0.21 -23.58 15 10 H 0.06 3.39 7.66 -2.91 -0.02 3.37 15 11 C 0.05 2.56 5.42 85.33 0.46 3.02 15 12 N -0.82 -41.14 13.92 21.87 0.30 -40.84 15 13 Si 0.95 37.12 23.96 68.60 1.64 38.77 15 14 H -0.23 -7.71 5.96 99.48 0.59 -7.12 15 15 H -0.27 -10.09 7.11 99.48 0.71 -9.38 15 16 H -0.25 -10.05 6.84 99.48 0.68 -9.37 15 17 C -0.30 -12.71 6.11 22.77 0.14 -12.57 15 18 C 0.17 6.88 6.69 22.54 0.15 7.03 15 19 O -0.32 -11.35 10.22 -77.12 -0.79 -12.14 15 20 C 0.01 0.35 9.79 113.37 1.11 1.46 15 21 H 0.12 2.00 8.14 -2.39 -0.02 1.98 15 22 H 0.05 1.19 7.63 -2.38 -0.02 1.17 15 23 H 0.05 1.19 7.63 -2.39 -0.02 1.17 15 24 H 0.15 4.61 6.20 -2.91 -0.02 4.60 15 25 H 0.30 13.43 8.29 -92.71 -0.77 12.66 15 26 H 0.13 5.27 2.96 -2.91 -0.01 5.26 15 27 H 0.06 1.56 7.62 -2.39 -0.02 1.54 15 28 H 0.05 1.35 6.26 -2.39 -0.01 1.34 15 29 H 0.13 2.49 8.14 -2.38 -0.02 2.47 15 Total: -1.00 -60.19 255.09 6.37 -53.82 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 1.05 Total: 9.69 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: 4.58 Total: -12.50 kcal Atomic # 7 Polarization: -66.34 SS G_CDS: 0.66 Total: -65.68 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -1.56 Total: -24.09 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 1.64 Total: 38.77 kcal Total: -60.19 6.37 -53.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044369493.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.130 kcal (2) G-P(sol) polarization free energy of solvation -60.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds