Wall clock time and date at job start Mon Mar 30 2020 03:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38336 * 119.85735 * 2 1 4 4 C 1.38219 * 120.22010 * 179.74023 * 3 2 1 5 5 C 1.38641 * 119.80150 * 0.26045 * 4 3 2 6 6 C 1.39509 * 119.96097 * 359.97438 * 5 4 3 7 7 C 1.38294 * 119.85772 * 180.19478 * 2 1 3 8 8 O 1.35927 * 119.47813 * 179.97438 * 6 5 4 9 9 C 1.42999 * 116.69374 * 327.24479 * 8 6 5 10 10 C 1.50756 * 109.63248 * 46.30287 * 9 8 6 11 11 O 1.21291 * 120.12217 * 148.68709 * 10 9 8 12 12 N 1.35072 * 119.75129 * 328.71082 * 10 9 8 13 13 C 1.37105 * 120.49306 * 181.67878 * 12 10 9 14 14 H 1.07997 * 119.99703 * 41.97288 * 13 12 10 15 15 C 1.38873 * 120.00133 * 221.97029 * 13 12 10 16 16 N 1.31433 * 120.00007 * 15.53742 * 15 13 12 17 17 Si 1.86798 * 119.99801 * 195.53746 * 15 13 12 18 18 H 1.48504 * 109.46905 * 90.00397 * 17 15 13 19 19 H 1.48504 * 109.47064 * 210.00125 * 17 15 13 20 20 H 1.48497 * 109.47366 * 330.00002 * 17 15 13 21 21 H 1.08999 * 109.47039 * 90.00334 * 1 2 3 22 22 H 1.08998 * 109.47213 * 210.00101 * 1 2 3 23 23 H 1.09005 * 109.46762 * 330.00303 * 1 2 3 24 24 H 1.08003 * 119.89215 * 0.02562 * 3 2 1 25 25 H 1.07996 * 120.09828 * 180.27980 * 4 3 2 26 26 H 1.08006 * 120.06382 * 0.05073 * 7 2 1 27 27 H 1.08999 * 109.45118 * 286.25267 * 9 8 6 28 28 H 1.09000 * 109.44768 * 166.35026 * 9 8 6 29 29 H 0.96996 * 119.99973 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1958 1.1997 0.0000 4 6 3.5779 1.2085 0.0054 5 6 4.2746 0.0098 0.0054 6 6 3.5797 -1.1999 0.0005 7 6 2.1956 -1.1994 -0.0041 8 8 4.2726 -2.3693 -0.0001 9 6 5.5266 -2.3727 -0.6874 10 6 6.3187 -1.1493 -0.3020 11 8 7.5305 -1.1930 -0.2729 12 7 5.6739 -0.0044 0.0112 13 6 6.3799 1.1267 0.3305 14 1 7.2584 1.3934 -0.2382 15 6 5.9652 1.9294 1.3851 16 7 5.1011 1.4685 2.2616 17 14 6.6356 3.6644 1.5579 18 1 5.7594 4.6094 0.8200 19 1 6.6709 4.0407 2.9940 20 1 8.0094 3.7224 0.9971 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8901 0.5138 24 1 1.6517 2.1327 0.0004 25 1 4.1136 2.1463 0.0100 26 1 1.6543 -2.1340 -0.0081 27 1 5.3509 -2.3671 -1.7631 28 1 6.0866 -3.2677 -0.4164 29 1 4.8117 2.0290 2.9984 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057788517.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:57 Heat of formation + Delta-G solvation = -38.807599 kcal Electronic energy + Delta-G solvation = -16476.997466 eV Core-core repulsion = 13751.620636 eV Total energy + Delta-G solvation = -2725.376830 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.47013 -37.79243 -36.89047 -35.13271 -32.06651 -30.81006 -29.81505 -27.63626 -26.03618 -24.65052 -22.05227 -21.20265 -18.91684 -18.14234 -17.25933 -16.13867 -15.63445 -15.07381 -14.48933 -14.02055 -13.80510 -13.71544 -13.29632 -13.19478 -13.00659 -12.19039 -12.10209 -11.66322 -11.56306 -11.27247 -11.10805 -10.75279 -10.53282 -10.35844 -10.20000 -9.40591 -8.95134 -8.63225 -7.72842 -6.89110 -6.37632 -4.30868 1.99975 2.20339 3.04596 3.14823 3.19241 3.45598 3.80830 4.09834 4.48271 4.54540 4.94492 5.16870 5.50581 5.55475 5.64470 5.65913 5.84202 5.95185 5.98085 6.14274 6.24855 6.51744 6.75644 6.96309 7.16699 7.32455 7.36264 7.51685 7.79688 8.08004 8.23566 8.81186 9.03563 9.52505 10.51266 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.021378 B = 0.013284 C = 0.008702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.445599 B = 2107.322111 C = 3216.890061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.116 4.116 3 C -0.122 4.122 4 C -0.079 4.079 5 C 0.144 3.856 6 C 0.053 3.947 7 C -0.121 4.121 8 O -0.313 6.313 9 C 0.053 3.947 10 C 0.439 3.561 11 O -0.542 6.542 12 N -0.380 5.380 13 C -0.342 4.342 14 H 0.099 0.901 15 C 0.047 3.953 16 N -0.841 5.841 17 Si 0.922 3.078 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.266 1.266 21 H 0.059 0.941 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.112 0.888 25 H 0.129 0.871 26 H 0.120 0.880 27 H 0.077 0.923 28 H 0.127 0.873 29 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.884 -1.205 -4.263 9.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.141 4.141 4 C -0.101 4.101 5 C 0.046 3.954 6 C 0.007 3.993 7 C -0.140 4.140 8 O -0.228 6.228 9 C -0.025 4.025 10 C 0.229 3.771 11 O -0.423 6.423 12 N -0.089 5.089 13 C -0.468 4.468 14 H 0.117 0.883 15 C -0.162 4.162 16 N -0.474 5.474 17 Si 0.747 3.253 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.190 1.190 21 H 0.078 0.922 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.130 0.870 25 H 0.146 0.854 26 H 0.138 0.862 27 H 0.095 0.905 28 H 0.145 0.855 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.282 -1.352 -3.956 8.397 hybrid contribution 0.470 0.972 0.341 1.132 sum -6.811 -0.381 -3.615 7.720 Atomic orbital electron populations 1.20598 0.91842 1.01859 1.01225 1.19327 0.95086 0.92390 1.04991 1.20685 0.93616 0.96750 1.03066 1.20558 0.92828 0.97183 0.99522 1.18228 0.84418 0.93131 0.99648 1.18565 0.91280 0.83249 1.06202 1.19978 0.90237 0.97833 1.05985 1.86056 1.32256 1.31613 1.72919 1.23052 0.83346 0.98677 0.97441 1.21346 0.88994 0.84591 0.82170 1.90579 1.13770 1.83798 1.54106 1.41285 1.02318 1.09636 1.55704 1.19416 1.12354 0.99714 1.15342 0.88341 1.25520 0.96371 1.00644 0.93662 1.70034 1.29911 1.36271 1.11139 0.85993 0.79897 0.81495 0.77889 1.19711 1.20512 1.18980 0.92199 0.92321 0.92240 0.86985 0.85353 0.86174 0.90538 0.85524 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.29 10.00 36.01 0.36 -0.93 15 2 C -0.12 -2.05 5.88 -104.56 -0.62 -2.66 15 3 C -0.12 -2.33 9.69 -39.55 -0.38 -2.71 15 4 C -0.08 -1.80 7.70 -39.44 -0.30 -2.10 15 5 C 0.14 3.50 5.47 -83.53 -0.46 3.04 15 6 C 0.05 1.17 6.44 -39.04 -0.25 0.92 15 7 C -0.12 -2.29 9.65 -39.50 -0.38 -2.67 15 8 O -0.31 -6.66 10.45 -19.51 -0.20 -6.86 15 9 C 0.05 1.05 7.17 36.03 0.26 1.31 15 10 C 0.44 11.11 7.62 -10.83 -0.08 11.03 15 11 O -0.54 -15.06 17.09 5.55 0.09 -14.97 15 12 N -0.38 -10.09 2.75 -58.79 -0.16 -10.26 15 13 C -0.34 -9.41 8.32 -14.96 -0.12 -9.54 15 14 H 0.10 2.75 7.85 -52.49 -0.41 2.34 15 15 C 0.05 1.22 3.50 -17.49 -0.06 1.16 15 16 N -0.84 -22.78 11.45 55.49 0.64 -22.15 15 17 Si 0.92 19.93 29.58 -169.99 -5.03 14.91 15 18 H -0.27 -5.61 7.11 56.52 0.40 -5.21 15 19 H -0.28 -6.01 7.11 56.52 0.40 -5.61 15 20 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 15 22 H 0.06 0.70 8.08 -51.93 -0.42 0.28 15 23 H 0.06 0.72 8.08 -51.93 -0.42 0.30 15 24 H 0.11 1.82 8.06 -52.48 -0.42 1.40 15 25 H 0.13 3.03 6.10 -52.49 -0.32 2.71 15 26 H 0.12 1.95 8.06 -52.48 -0.42 1.53 15 27 H 0.08 1.29 8.14 -51.93 -0.42 0.86 15 28 H 0.13 2.14 8.14 -51.93 -0.42 1.71 15 29 H 0.27 6.97 8.31 -40.82 -0.34 6.64 15 LS Contribution 253.07 15.07 3.81 3.81 Total: -1.00 -31.08 253.07 -5.71 -36.79 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -2.82 Total: 1.86 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -2.04 Total: -3.14 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: 0.47 Total: -32.40 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.11 Total: -21.83 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.03 Total: 14.91 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -31.08 -5.71 -36.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057788517.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.017 kcal (2) G-P(sol) polarization free energy of solvation -31.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds