Wall clock time and date at job start Mon Mar 30 2020 03:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38336 * 119.85735 * 2 1 4 4 C 1.38219 * 120.22010 * 179.74023 * 3 2 1 5 5 C 1.38641 * 119.80150 * 0.26045 * 4 3 2 6 6 C 1.39509 * 119.96097 * 359.97438 * 5 4 3 7 7 C 1.38294 * 119.85772 * 180.19478 * 2 1 3 8 8 O 1.35927 * 119.47813 * 179.97438 * 6 5 4 9 9 C 1.42999 * 116.69374 * 327.24479 * 8 6 5 10 10 C 1.50756 * 109.63248 * 46.30287 * 9 8 6 11 11 O 1.21291 * 120.12217 * 148.68709 * 10 9 8 12 12 N 1.35072 * 119.75129 * 328.71082 * 10 9 8 13 13 C 1.37105 * 120.49306 * 181.67878 * 12 10 9 14 14 H 1.07997 * 119.99703 * 41.97288 * 13 12 10 15 15 C 1.38873 * 120.00133 * 221.97029 * 13 12 10 16 16 N 1.31433 * 120.00007 * 15.53742 * 15 13 12 17 17 Si 1.86798 * 119.99801 * 195.53746 * 15 13 12 18 18 H 1.48504 * 109.46905 * 90.00397 * 17 15 13 19 19 H 1.48504 * 109.47064 * 210.00125 * 17 15 13 20 20 H 1.48497 * 109.47366 * 330.00002 * 17 15 13 21 21 H 1.08999 * 109.47039 * 90.00334 * 1 2 3 22 22 H 1.08998 * 109.47213 * 210.00101 * 1 2 3 23 23 H 1.09005 * 109.46762 * 330.00303 * 1 2 3 24 24 H 1.08003 * 119.89215 * 0.02562 * 3 2 1 25 25 H 1.07996 * 120.09828 * 180.27980 * 4 3 2 26 26 H 1.08006 * 120.06382 * 0.05073 * 7 2 1 27 27 H 1.08999 * 109.45118 * 286.25267 * 9 8 6 28 28 H 1.09000 * 109.44768 * 166.35026 * 9 8 6 29 29 H 0.96996 * 119.99973 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1958 1.1997 0.0000 4 6 3.5779 1.2085 0.0054 5 6 4.2746 0.0098 0.0054 6 6 3.5797 -1.1999 0.0005 7 6 2.1956 -1.1994 -0.0041 8 8 4.2726 -2.3693 -0.0001 9 6 5.5266 -2.3727 -0.6874 10 6 6.3187 -1.1493 -0.3020 11 8 7.5305 -1.1930 -0.2729 12 7 5.6739 -0.0044 0.0112 13 6 6.3799 1.1267 0.3305 14 1 7.2584 1.3934 -0.2382 15 6 5.9652 1.9294 1.3851 16 7 5.1011 1.4685 2.2616 17 14 6.6356 3.6644 1.5579 18 1 5.7594 4.6094 0.8200 19 1 6.6709 4.0407 2.9940 20 1 8.0094 3.7224 0.9971 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8901 0.5138 24 1 1.6517 2.1327 0.0004 25 1 4.1136 2.1463 0.0100 26 1 1.6543 -2.1340 -0.0081 27 1 5.3509 -2.3671 -1.7631 28 1 6.0866 -3.2677 -0.4164 29 1 4.8117 2.0290 2.9984 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057788517.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:57 Heat of formation + Delta-G solvation = -59.103077 kcal Electronic energy + Delta-G solvation = -16477.877544 eV Core-core repulsion = 13751.620636 eV Total energy + Delta-G solvation = -2726.256908 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.18915 -39.55109 -38.53218 -36.95828 -34.01713 -32.30329 -31.40031 -29.37651 -27.54563 -26.41793 -23.73531 -22.80691 -20.68311 -19.93124 -19.01337 -17.85827 -17.35911 -16.92414 -16.17474 -15.78490 -15.44946 -15.31116 -15.05270 -14.71070 -14.39627 -13.89124 -13.60600 -13.36065 -12.94643 -12.83366 -12.76335 -12.47534 -12.23558 -11.92278 -11.81686 -11.27217 -10.80670 -10.45580 -9.33321 -8.74558 -8.25052 -6.37088 0.36581 0.60416 1.30651 1.34781 1.47762 1.71242 2.06601 2.36272 2.76081 2.79463 3.13001 3.45740 4.02798 4.12864 4.17913 4.27995 4.50448 4.54444 4.66901 4.98183 5.03044 5.13589 5.25853 5.34304 5.41153 5.53144 5.80244 5.95491 6.02752 6.13259 6.47530 6.84897 7.12243 7.59115 8.53942 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.021378 B = 0.013284 C = 0.008702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.445599 B = 2107.322111 C = 3216.890061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.097 4.097 3 C -0.126 4.126 4 C -0.094 4.094 5 C 0.103 3.897 6 C 0.038 3.962 7 C -0.121 4.121 8 O -0.317 6.317 9 C 0.064 3.936 10 C 0.415 3.585 11 O -0.590 6.590 12 N -0.396 5.396 13 C -0.376 4.376 14 H 0.076 0.924 15 C 0.017 3.983 16 N -0.868 5.868 17 Si 0.987 3.013 18 H -0.253 1.253 19 H -0.272 1.272 20 H -0.271 1.271 21 H 0.083 0.917 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.142 0.858 25 H 0.107 0.893 26 H 0.153 0.847 27 H 0.109 0.891 28 H 0.155 0.845 29 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.835 -1.137 -4.398 11.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.098 4.098 3 C -0.144 4.144 4 C -0.115 4.115 5 C 0.007 3.993 6 C -0.008 4.008 7 C -0.139 4.139 8 O -0.232 6.232 9 C -0.014 4.014 10 C 0.206 3.794 11 O -0.474 6.474 12 N -0.107 5.107 13 C -0.503 4.503 14 H 0.094 0.906 15 C -0.189 4.189 16 N -0.501 5.501 17 Si 0.808 3.192 18 H -0.177 1.177 19 H -0.197 1.197 20 H -0.195 1.195 21 H 0.102 0.898 22 H 0.094 0.906 23 H 0.092 0.908 24 H 0.160 0.840 25 H 0.126 0.874 26 H 0.170 0.830 27 H 0.127 0.873 28 H 0.173 0.827 29 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.298 -1.289 -4.102 11.159 hybrid contribution 1.238 0.934 0.361 1.592 sum -9.060 -0.355 -3.741 9.809 Atomic orbital electron populations 1.20711 0.87833 1.03536 1.03247 1.19928 0.97778 0.91128 1.01010 1.21051 0.92232 0.98976 1.02188 1.20603 0.94466 0.95957 1.00488 1.18560 0.83482 0.94832 1.02476 1.18959 0.92552 0.82672 1.06600 1.20460 0.88992 0.99872 1.04612 1.86032 1.32433 1.31201 1.73495 1.23160 0.82311 0.96782 0.99120 1.22363 0.89147 0.85954 0.81896 1.90521 1.15575 1.84760 1.56535 1.41499 1.03593 1.09680 1.55913 1.19438 1.12908 1.01427 1.16486 0.90598 1.26282 0.96150 1.03961 0.92547 1.70119 1.30823 1.37646 1.11492 0.85052 0.79118 0.76834 0.78175 1.17685 1.19710 1.19540 0.89809 0.90564 0.90776 0.84046 0.87448 0.82958 0.87323 0.82708 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.00 10.00 71.24 0.71 -1.29 15 2 C -0.10 -3.05 5.88 -19.83 -0.12 -3.17 15 3 C -0.13 -4.50 9.69 22.29 0.22 -4.29 15 4 C -0.09 -4.27 7.70 22.36 0.17 -4.10 15 5 C 0.10 5.07 5.47 38.25 0.21 5.28 15 6 C 0.04 1.64 6.44 22.62 0.15 1.79 15 7 C -0.12 -4.18 9.65 22.32 0.22 -3.96 15 8 O -0.32 -13.10 10.45 -92.73 -0.97 -14.07 15 9 C 0.06 2.49 7.17 71.25 0.51 3.00 15 10 C 0.42 21.81 7.62 87.63 0.67 22.48 15 11 O -0.59 -34.51 17.09 -3.06 -0.05 -34.57 15 12 N -0.40 -21.98 2.75 -458.13 -1.26 -23.24 15 13 C -0.38 -21.82 8.32 84.02 0.70 -21.12 15 14 H 0.08 4.57 7.85 -2.91 -0.02 4.55 15 15 C 0.02 0.92 3.50 84.90 0.30 1.22 15 16 N -0.87 -47.95 11.45 21.65 0.25 -47.70 15 17 Si 0.99 41.69 29.58 68.60 2.03 43.72 15 18 H -0.25 -9.82 7.11 99.48 0.71 -9.11 15 19 H -0.27 -11.09 7.11 99.48 0.71 -10.38 15 20 H -0.27 -11.56 7.11 99.48 0.71 -10.85 15 21 H 0.08 1.43 8.14 -2.39 -0.02 1.41 15 22 H 0.08 1.37 8.08 -2.39 -0.02 1.35 15 23 H 0.07 1.37 8.08 -2.38 -0.02 1.35 15 24 H 0.14 4.14 8.06 -2.91 -0.02 4.11 15 25 H 0.11 5.22 6.10 -2.91 -0.02 5.20 15 26 H 0.15 4.26 8.06 -2.91 -0.02 4.23 15 27 H 0.11 3.51 8.14 -2.39 -0.02 3.49 15 28 H 0.16 5.05 8.14 -2.39 -0.02 5.03 15 29 H 0.28 14.27 8.31 -92.71 -0.77 13.50 15 Total: -1.00 -71.01 253.07 4.89 -66.12 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 1.17 Total: 13.89 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 3.73 Total: -4.16 kcal Atomic # 7 Polarization: -69.93 SS G_CDS: -1.01 Total: -70.94 kcal Atomic # 8 Polarization: -47.61 SS G_CDS: -1.02 Total: -48.63 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -71.01 4.89 -66.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057788517.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.017 kcal (2) G-P(sol) polarization free energy of solvation -71.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds