Wall clock time and date at job start Mon Mar 30 2020 02:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86799 * 120.00093 * 2 1 4 4 H 1.48500 * 109.47152 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46967 * 299.99731 * 3 2 1 6 6 H 1.48497 * 109.47226 * 59.99823 * 3 2 1 7 7 C 1.40048 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00014 * 179.97438 * 7 2 1 9 9 C 1.46378 * 120.00238 * 0.02562 * 7 2 1 10 10 O 1.21686 * 119.99924 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00106 * 179.97438 * 9 7 2 12 12 C 1.46497 * 119.99909 * 179.97438 * 11 9 7 13 13 H 1.08995 * 110.83130 * 328.71301 * 12 11 9 14 14 C 1.54709 * 110.93261 * 92.45457 * 12 11 9 15 15 O 1.43768 * 102.78633 * 92.91066 * 14 12 11 16 16 C 1.36145 * 109.21937 * 27.81337 * 15 14 12 17 17 C 1.39278 * 129.88836 * 161.41376 * 16 15 14 18 18 C 1.37935 * 120.23832 * 178.96117 * 17 16 15 19 19 C 1.38280 * 120.35047 * 0.03457 * 18 17 16 20 20 C 1.38350 * 119.76749 * 0.20077 * 19 18 17 21 21 C 1.37743 * 119.97981 * 359.93096 * 20 19 18 22 22 H 0.96998 * 119.99936 * 0.02562 * 1 2 3 23 23 H 0.97001 * 119.99881 * 359.97438 * 11 9 7 24 24 H 1.09003 * 110.74970 * 211.23436 * 14 12 11 25 25 H 1.09006 * 110.75020 * 334.40063 * 14 12 11 26 26 H 1.08007 * 119.88109 * 359.23709 * 17 16 15 27 27 H 1.08003 * 119.82231 * 180.02562 * 18 17 16 28 28 H 1.07999 * 120.12167 * 180.22619 * 19 18 17 29 29 H 1.08007 * 120.01211 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3463 0.0006 5 1 1.8821 2.3963 -1.2125 6 1 1.8820 2.3964 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2751 -2.4806 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9489 -3.6478 0.0005 12 6 1.2164 -4.9164 0.0011 13 1 0.2689 -4.8167 0.5305 14 6 0.9931 -5.4264 -1.4424 15 8 2.1245 -6.2878 -1.6541 16 6 2.5346 -6.7913 -0.4575 17 6 3.3318 -7.8993 -0.1808 18 6 3.6448 -8.2215 1.1234 19 6 3.1699 -7.4489 2.1672 20 6 2.3734 -6.3495 1.9010 21 6 2.0573 -6.0274 0.5996 22 1 -0.4850 0.8400 -0.0004 23 1 2.9189 -3.6478 0.0002 24 1 0.0615 -5.9879 -1.5138 25 1 0.9976 -4.5972 -2.1499 26 1 3.7101 -8.5058 -0.9905 27 1 4.2639 -9.0820 1.3303 28 1 3.4203 -7.7024 3.1867 29 1 1.9999 -5.7435 2.7134 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070530843.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:38 Heat of formation + Delta-G solvation = -42.821451 kcal Electronic energy + Delta-G solvation = -15707.703588 eV Core-core repulsion = 12982.152705 eV Total energy + Delta-G solvation = -2725.550884 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.89883 -37.39177 -36.95263 -33.59041 -32.40493 -30.70189 -29.72367 -28.37917 -26.07811 -23.17058 -21.98933 -21.30845 -19.67833 -17.55277 -16.96871 -16.22200 -15.96257 -15.43214 -15.17336 -14.34616 -13.97572 -13.71917 -13.25581 -12.92996 -12.58526 -12.25892 -12.20264 -11.51659 -11.31591 -11.19794 -10.94844 -10.78707 -10.57690 -10.48662 -10.23129 -8.92634 -8.86091 -8.09934 -7.68099 -7.63849 -6.25208 -4.71090 1.40397 1.52842 3.10140 3.18758 3.23410 3.54740 3.82434 4.08391 4.47037 4.75620 4.82997 4.97661 5.09670 5.20397 5.47409 5.48548 5.64336 5.74362 5.84718 5.98946 6.20910 6.25852 6.44316 6.56546 6.67523 6.77677 7.38169 7.39311 7.81641 7.96847 8.26350 8.96358 9.41917 10.51039 10.68921 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.042167 B = 0.006176 C = 0.005908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.867669 B = 4532.922042 C = 4737.905568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.553 3.447 10 O -0.579 6.579 11 N -0.751 5.751 12 C 0.169 3.831 13 H 0.105 0.895 14 C 0.037 3.963 15 O -0.306 6.306 16 C 0.115 3.885 17 C -0.149 4.149 18 C -0.086 4.086 19 C -0.158 4.158 20 C -0.055 4.055 21 C -0.178 4.178 22 H 0.269 0.731 23 H 0.384 0.616 24 H 0.077 0.923 25 H 0.112 0.888 26 H 0.124 0.876 27 H 0.127 0.873 28 H 0.124 0.876 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.973 -12.025 1.649 13.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.579 4.579 8 H 0.087 0.913 9 C 0.358 3.642 10 O -0.462 6.462 11 N -0.405 5.405 12 C 0.061 3.939 13 H 0.122 0.878 14 C -0.039 4.039 15 O -0.219 6.219 16 C 0.069 3.931 17 C -0.168 4.168 18 C -0.104 4.104 19 C -0.177 4.177 20 C -0.073 4.073 21 C -0.180 4.180 22 H 0.079 0.921 23 H 0.216 0.784 24 H 0.095 0.905 25 H 0.130 0.870 26 H 0.142 0.858 27 H 0.144 0.856 28 H 0.142 0.858 29 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.954 -11.908 1.414 12.974 hybrid contribution 0.804 0.889 0.063 1.200 sum 5.758 -11.018 1.476 12.520 Atomic orbital electron populations 1.70024 1.07061 1.27307 1.35089 1.25717 0.94654 1.00363 0.92547 0.86287 0.80517 0.81565 0.78250 1.18730 1.20106 1.20119 1.20907 0.93712 0.89148 1.54110 0.91267 1.18321 0.87259 0.82304 0.76277 1.90601 1.13973 1.86570 1.55099 1.46229 1.08727 1.03523 1.82000 1.20544 0.96379 0.83921 0.93015 0.87759 1.24446 0.86853 0.93023 0.99599 1.86817 1.46960 1.61154 1.27013 1.19687 0.95176 0.93053 0.85196 1.20197 1.02967 0.96339 0.97293 1.20808 0.98796 0.99234 0.91589 1.20994 1.00719 0.96849 0.99111 1.20401 0.95919 0.95974 0.95052 1.21106 1.04545 0.98119 0.94197 0.92067 0.78410 0.90499 0.86984 0.85805 0.85555 0.85768 0.85746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.63 11.83 55.55 0.66 -21.97 15 2 C 0.09 2.40 5.50 -17.37 -0.10 2.31 15 3 Si 0.91 19.98 29.56 -169.99 -5.02 14.96 15 4 H -0.26 -5.61 7.11 56.52 0.40 -5.21 15 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 15 6 H -0.28 -5.94 7.11 56.52 0.40 -5.54 15 7 C -0.54 -15.17 9.54 -35.63 -0.34 -15.51 15 8 H 0.07 1.80 7.85 -52.49 -0.41 1.38 15 9 C 0.55 15.46 7.75 -12.99 -0.10 15.36 15 10 O -0.58 -18.21 14.66 5.20 0.08 -18.13 15 11 N -0.75 -16.96 5.15 -55.01 -0.28 -17.24 15 12 C 0.17 3.33 3.50 -67.72 -0.24 3.09 15 13 H 0.10 2.22 7.54 -51.93 -0.39 1.83 15 14 C 0.04 0.67 7.73 38.06 0.29 0.96 15 15 O -0.31 -5.43 11.11 -20.20 -0.22 -5.65 15 16 C 0.12 1.90 7.03 -38.96 -0.27 1.62 15 17 C -0.15 -2.02 10.06 -39.31 -0.40 -2.42 15 18 C -0.09 -1.01 10.02 -39.68 -0.40 -1.40 15 19 C -0.16 -1.95 10.07 -39.52 -0.40 -2.35 15 20 C -0.05 -0.82 10.03 -39.72 -0.40 -1.21 15 21 C -0.18 -3.03 5.83 -104.10 -0.61 -3.64 15 22 H 0.27 7.17 8.29 -40.82 -0.34 6.83 15 23 H 0.38 8.07 8.63 -40.82 -0.35 7.72 15 24 H 0.08 1.21 8.14 -51.93 -0.42 0.79 15 25 H 0.11 2.14 8.10 -51.93 -0.42 1.72 15 26 H 0.12 1.43 8.06 -52.48 -0.42 1.01 15 27 H 0.13 1.07 8.06 -52.48 -0.42 0.65 15 28 H 0.12 1.19 8.06 -52.49 -0.42 0.77 15 29 H 0.12 1.77 8.06 -52.48 -0.42 1.35 15 LS Contribution 261.45 15.07 3.94 3.94 Total: -1.00 -32.88 261.45 -6.63 -39.51 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -2.82 Total: 7.77 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -2.95 Total: -3.18 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.37 Total: -39.21 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.15 Total: -23.78 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -32.88 -6.63 -39.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070530843.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.312 kcal (2) G-P(sol) polarization free energy of solvation -32.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds