Wall clock time and date at job start Mon Mar 30 2020 02:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86799 * 120.00093 * 2 1 4 4 H 1.48500 * 109.47152 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46967 * 299.99731 * 3 2 1 6 6 H 1.48497 * 109.47226 * 59.99823 * 3 2 1 7 7 C 1.40048 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00014 * 179.97438 * 7 2 1 9 9 C 1.46378 * 120.00238 * 0.02562 * 7 2 1 10 10 O 1.21686 * 119.99924 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00106 * 179.97438 * 9 7 2 12 12 C 1.46497 * 119.99909 * 179.97438 * 11 9 7 13 13 H 1.08995 * 110.83130 * 328.71301 * 12 11 9 14 14 C 1.54709 * 110.93261 * 92.45457 * 12 11 9 15 15 O 1.43768 * 102.78633 * 92.91066 * 14 12 11 16 16 C 1.36145 * 109.21937 * 27.81337 * 15 14 12 17 17 C 1.39278 * 129.88836 * 161.41376 * 16 15 14 18 18 C 1.37935 * 120.23832 * 178.96117 * 17 16 15 19 19 C 1.38280 * 120.35047 * 0.03457 * 18 17 16 20 20 C 1.38350 * 119.76749 * 0.20077 * 19 18 17 21 21 C 1.37743 * 119.97981 * 359.93096 * 20 19 18 22 22 H 0.96998 * 119.99936 * 0.02562 * 1 2 3 23 23 H 0.97001 * 119.99881 * 359.97438 * 11 9 7 24 24 H 1.09003 * 110.74970 * 211.23436 * 14 12 11 25 25 H 1.09006 * 110.75020 * 334.40063 * 14 12 11 26 26 H 1.08007 * 119.88109 * 359.23709 * 17 16 15 27 27 H 1.08003 * 119.82231 * 180.02562 * 18 17 16 28 28 H 1.07999 * 120.12167 * 180.22619 * 19 18 17 29 29 H 1.08007 * 120.01211 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3463 0.0006 5 1 1.8821 2.3963 -1.2125 6 1 1.8820 2.3964 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2751 -2.4806 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9489 -3.6478 0.0005 12 6 1.2164 -4.9164 0.0011 13 1 0.2689 -4.8167 0.5305 14 6 0.9931 -5.4264 -1.4424 15 8 2.1245 -6.2878 -1.6541 16 6 2.5346 -6.7913 -0.4575 17 6 3.3318 -7.8993 -0.1808 18 6 3.6448 -8.2215 1.1234 19 6 3.1699 -7.4489 2.1672 20 6 2.3734 -6.3495 1.9010 21 6 2.0573 -6.0274 0.5996 22 1 -0.4850 0.8400 -0.0004 23 1 2.9189 -3.6478 0.0002 24 1 0.0615 -5.9879 -1.5138 25 1 0.9976 -4.5972 -2.1499 26 1 3.7101 -8.5058 -0.9905 27 1 4.2639 -9.0820 1.3303 28 1 3.4203 -7.7024 3.1867 29 1 1.9999 -5.7435 2.7134 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070530843.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:38 Heat of formation + Delta-G solvation = -66.460459 kcal Electronic energy + Delta-G solvation = -15708.728653 eV Core-core repulsion = 12982.152705 eV Total energy + Delta-G solvation = -2726.575948 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.21752 -39.24572 -38.30406 -35.39526 -34.50246 -32.13744 -30.90867 -29.87270 -28.11087 -24.52252 -23.23754 -22.68192 -21.57495 -19.44253 -18.30397 -17.76293 -17.36872 -17.27062 -16.40669 -15.91361 -15.82983 -14.94814 -14.78187 -14.41276 -14.36427 -13.75669 -13.47366 -13.19794 -12.96706 -12.72466 -12.68108 -12.56749 -12.10005 -11.98679 -11.73634 -10.97895 -10.15095 -9.83558 -9.60100 -9.17126 -8.33127 -6.90981 0.27627 0.41894 1.38532 1.39237 1.57143 2.22114 2.26093 2.41527 2.66620 3.13633 3.38839 3.49470 3.79606 3.88200 4.18467 4.23555 4.30613 4.51890 4.57028 4.64038 4.74065 5.05473 5.28380 5.38664 5.48929 5.55366 5.66501 5.81136 6.05545 6.16723 6.23015 6.82395 7.42041 8.40682 8.61338 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.042167 B = 0.006176 C = 0.005908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.867669 B = 4532.922042 C = 4737.905568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.030 3.970 3 Si 0.999 3.001 4 H -0.249 1.249 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.571 4.571 8 H 0.084 0.916 9 C 0.541 3.459 10 O -0.626 6.626 11 N -0.740 5.740 12 C 0.162 3.838 13 H 0.078 0.922 14 C 0.045 3.955 15 O -0.315 6.315 16 C 0.090 3.910 17 C -0.146 4.146 18 C -0.071 4.071 19 C -0.146 4.146 20 C -0.070 4.070 21 C -0.199 4.199 22 H 0.276 0.724 23 H 0.392 0.608 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.147 0.853 27 H 0.171 0.829 28 H 0.159 0.841 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.501 -13.205 2.392 15.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.185 4.185 3 Si 0.818 3.182 4 H -0.172 1.172 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.608 4.608 8 H 0.103 0.897 9 C 0.346 3.654 10 O -0.513 6.513 11 N -0.393 5.393 12 C 0.056 3.944 13 H 0.096 0.904 14 C -0.031 4.031 15 O -0.229 6.229 16 C 0.044 3.956 17 C -0.165 4.165 18 C -0.089 4.089 19 C -0.164 4.164 20 C -0.088 4.088 21 C -0.201 4.201 22 H 0.086 0.914 23 H 0.225 0.775 24 H 0.115 0.885 25 H 0.111 0.889 26 H 0.165 0.835 27 H 0.189 0.811 28 H 0.177 0.823 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.521 -13.145 2.160 15.297 hybrid contribution 0.060 1.081 -0.099 1.087 sum 7.581 -12.064 2.061 14.396 Atomic orbital electron populations 1.70174 1.09423 1.29045 1.36055 1.26959 0.95574 1.04866 0.91149 0.84949 0.79229 0.75327 0.78659 1.17245 1.19211 1.19162 1.21422 0.94661 0.89985 1.54711 0.89744 1.18625 0.86900 0.83955 0.75952 1.90553 1.15832 1.87650 1.57251 1.45888 1.08970 1.03651 1.80781 1.20596 0.95663 0.83675 0.94496 0.90418 1.24232 0.88177 0.93002 0.97713 1.86775 1.46865 1.61274 1.28005 1.20013 0.96854 0.94524 0.84190 1.20634 1.01580 0.95157 0.99099 1.21349 0.97580 0.99680 0.90258 1.21415 0.98655 0.95105 1.01214 1.20607 0.96879 0.97320 0.94035 1.20911 1.05843 0.97754 0.95551 0.91403 0.77509 0.88539 0.88877 0.83530 0.81111 0.82340 0.86034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.79 11.83 21.84 0.26 -49.53 15 2 C 0.03 1.68 5.50 85.30 0.47 2.14 15 3 Si 1.00 41.03 29.56 68.60 2.03 43.06 15 4 H -0.25 -9.56 7.11 99.48 0.71 -8.85 15 5 H -0.27 -10.54 7.11 99.48 0.71 -9.83 15 6 H -0.27 -10.49 7.11 99.48 0.71 -9.79 15 7 C -0.57 -32.71 9.54 24.83 0.24 -32.48 15 8 H 0.08 4.40 7.85 -2.91 -0.02 4.38 15 9 C 0.54 31.61 7.75 86.36 0.67 32.28 15 10 O -0.63 -41.58 14.66 -4.30 -0.06 -41.65 15 11 N -0.74 -34.92 5.15 -446.18 -2.30 -37.21 15 12 C 0.16 6.72 3.50 45.13 0.16 6.88 15 13 H 0.08 3.58 7.54 -2.39 -0.02 3.56 15 14 C 0.05 1.70 7.73 72.56 0.56 2.26 15 15 O -0.31 -11.24 11.11 -95.20 -1.06 -12.30 15 16 C 0.09 2.87 7.03 22.67 0.16 3.03 15 17 C -0.15 -3.49 10.06 22.45 0.23 -3.26 15 18 C -0.07 -1.32 10.02 22.21 0.22 -1.10 15 19 C -0.15 -3.04 10.07 22.31 0.22 -2.81 15 20 C -0.07 -2.00 10.03 22.18 0.22 -1.78 15 21 C -0.20 -6.80 5.83 -19.53 -0.11 -6.92 15 22 H 0.28 15.13 8.29 -92.71 -0.77 14.36 15 23 H 0.39 16.98 8.63 -92.71 -0.80 16.18 15 24 H 0.10 3.17 8.14 -2.39 -0.02 3.15 15 25 H 0.09 3.80 8.10 -2.38 -0.02 3.78 15 26 H 0.15 2.80 8.06 -2.91 -0.02 2.78 15 27 H 0.17 1.74 8.06 -2.91 -0.02 1.72 15 28 H 0.16 2.23 8.06 -2.91 -0.02 2.21 15 29 H 0.12 3.45 8.06 -2.91 -0.02 3.43 15 Total: -1.00 -74.57 261.45 2.28 -72.29 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: 0.38 Total: 27.08 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 3.03 Total: -1.74 kcal Atomic # 7 Polarization: -84.71 SS G_CDS: -2.04 Total: -86.75 kcal Atomic # 8 Polarization: -52.83 SS G_CDS: -1.12 Total: -53.95 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Total: -74.57 2.28 -72.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070530843.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.831 kcal (2) G-P(sol) polarization free energy of solvation -74.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds