Wall clock time and date at job start Mon Mar 30 2020 03:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86797 * 120.00275 * 2 1 4 4 H 1.48495 * 109.47316 * 239.99538 * 3 2 1 5 5 H 1.48506 * 109.46897 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47311 * 119.99499 * 3 2 1 7 7 C 1.40141 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00311 * 180.02562 * 7 2 1 9 9 C 1.46224 * 119.99648 * 0.02562 * 7 2 1 10 10 O 1.21651 * 120.00184 * 359.97438 * 9 7 2 11 11 N 1.34782 * 119.99505 * 179.97438 * 9 7 2 12 12 C 1.34773 * 119.99588 * 179.97438 * 11 9 7 13 13 O 1.21246 * 120.00164 * 359.97438 * 12 11 9 14 14 C 1.50698 * 119.99781 * 180.02562 * 12 11 9 15 15 C 1.50707 * 109.47247 * 180.02562 * 14 12 11 16 16 C 1.38238 * 119.99792 * 89.99994 * 15 14 12 17 17 C 1.38235 * 119.99712 * 179.97438 * 16 15 14 18 18 C 1.38234 * 120.00220 * 359.97124 * 17 16 15 19 19 C 1.38233 * 120.00037 * 0.28719 * 18 17 16 20 20 C 1.38234 * 120.00179 * 269.97930 * 15 14 12 21 21 H 0.97004 * 119.99648 * 0.02562 * 1 2 3 22 22 H 0.96998 * 119.99981 * 0.02562 * 11 9 7 23 23 H 1.09005 * 109.47656 * 60.00320 * 14 12 11 24 24 H 1.09000 * 109.47265 * 299.99628 * 14 12 11 25 25 H 1.08005 * 120.00068 * 359.97438 * 16 15 14 26 26 H 1.07999 * 119.99770 * 179.97438 * 17 16 15 27 27 H 1.08002 * 119.99744 * 180.02562 * 18 17 16 28 28 H 1.07998 * 120.00395 * 179.72811 * 19 18 17 29 29 H 1.07999 * 119.99968 * 359.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0942 1.6963 -1.2124 5 1 1.2754 2.7464 -0.0006 6 1 3.0941 1.6964 1.2125 7 6 2.0070 -1.2137 0.0005 8 1 3.0870 -1.2137 0.0010 9 6 1.2758 -2.4800 0.0005 10 8 0.0593 -2.4799 0.0005 11 7 1.9497 -3.6472 0.0005 12 6 1.2758 -4.8143 0.0011 13 8 0.0633 -4.8143 0.0020 14 6 2.0292 -6.1194 0.0016 15 6 1.0499 -7.2649 0.0015 16 6 0.6012 -7.7905 -1.1957 17 6 -0.2967 -8.8415 -1.1958 18 6 -0.7454 -9.3674 0.0012 19 6 -0.3009 -8.8383 1.1985 20 6 0.6006 -7.7903 1.1986 21 1 -0.4850 0.8401 -0.0004 22 1 2.9197 -3.6472 0.0009 23 1 2.6559 -6.1769 0.8917 24 1 2.6559 -6.1776 -0.8883 25 1 0.9522 -7.3800 -2.1310 26 1 -0.6475 -9.2519 -2.1312 27 1 -1.4466 -10.1888 0.0011 28 1 -0.6548 -9.2462 2.1337 29 1 0.9517 -7.3802 2.1339 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075602380.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:38 Heat of formation + Delta-G solvation = -55.980252 kcal Electronic energy + Delta-G solvation = -15324.747125 eV Core-core repulsion = 12598.625632 eV Total energy + Delta-G solvation = -2726.121492 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.75540 -38.62364 -36.10900 -33.07731 -32.68958 -32.19710 -30.72974 -27.74009 -26.42899 -22.43995 -22.42562 -20.76326 -18.98935 -17.77762 -16.55199 -15.98530 -15.51705 -15.33267 -14.97318 -14.19993 -14.16932 -13.40465 -13.25703 -12.90219 -12.53563 -12.31126 -12.20333 -11.43334 -11.39721 -11.01790 -10.97310 -10.82495 -10.67397 -10.38394 -9.40117 -9.01984 -8.73917 -8.56795 -8.42167 -7.55816 -6.31078 -4.83653 1.50689 1.58340 3.05901 3.13719 3.16282 3.24588 3.82054 4.01638 4.42730 4.51617 4.85836 4.98323 5.13015 5.23942 5.43126 5.58075 5.65299 5.70120 5.70347 5.81082 6.16413 6.19871 6.59694 6.64513 6.77788 7.16012 7.28100 7.34899 7.88016 7.99043 8.62481 8.85833 9.36032 10.40891 10.58518 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.067721 B = 0.005024 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.361102 B = 5572.231573 C = 5681.105825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.084 3.916 3 Si 0.915 3.085 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.541 4.541 8 H 0.073 0.927 9 C 0.527 3.473 10 O -0.518 6.518 11 N -0.693 5.693 12 C 0.496 3.504 13 O -0.486 6.486 14 C -0.110 4.110 15 C -0.058 4.058 16 C -0.106 4.106 17 C -0.121 4.121 18 C -0.127 4.127 19 C -0.121 4.121 20 C -0.106 4.106 21 H 0.274 0.726 22 H 0.393 0.607 23 H 0.099 0.901 24 H 0.099 0.901 25 H 0.119 0.881 26 H 0.119 0.881 27 H 0.117 0.883 28 H 0.119 0.881 29 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.313 -13.294 0.003 14.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.138 4.138 3 Si 0.739 3.261 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.576 4.576 8 H 0.092 0.908 9 C 0.332 3.668 10 O -0.395 6.395 11 N -0.355 5.355 12 C 0.281 3.719 13 O -0.357 6.357 14 C -0.150 4.150 15 C -0.058 4.058 16 C -0.124 4.124 17 C -0.139 4.139 18 C -0.145 4.145 19 C -0.139 4.139 20 C -0.124 4.124 21 H 0.084 0.916 22 H 0.225 0.775 23 H 0.117 0.883 24 H 0.117 0.883 25 H 0.137 0.863 26 H 0.137 0.863 27 H 0.135 0.865 28 H 0.137 0.863 29 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.472 -13.169 0.003 13.907 hybrid contribution 1.071 0.835 -0.001 1.358 sum 5.543 -12.334 0.002 13.522 Atomic orbital electron populations 1.69989 1.07226 1.28028 1.33399 1.25782 0.94720 1.00610 0.92648 0.86306 0.79737 0.80464 0.79561 1.19101 1.20391 1.19096 1.20887 0.93765 0.88936 1.54048 0.90839 1.18587 0.87825 0.82029 0.78318 1.90740 1.13340 1.85693 1.49775 1.45394 1.11279 1.07640 1.71221 1.20654 0.88656 0.85204 0.77365 1.90778 1.13580 1.87373 1.43977 1.20852 0.97732 0.91575 1.04840 1.19376 0.97651 0.95251 0.93558 1.21000 0.97629 0.96290 0.97481 1.21062 0.97811 0.97074 0.97958 1.21076 1.00284 1.00397 0.92724 1.21062 0.97786 0.97089 0.97959 1.20999 0.97592 0.96324 0.97483 0.91551 0.77497 0.88258 0.88267 0.86252 0.86298 0.86454 0.86297 0.86254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.67 11.83 55.56 0.66 -22.01 15 2 C 0.08 2.29 5.50 -17.35 -0.10 2.19 15 3 Si 0.92 19.50 29.56 -169.99 -5.02 14.48 15 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 15 5 H -0.28 -5.85 7.11 56.52 0.40 -5.44 15 6 H -0.27 -5.48 7.11 56.52 0.40 -5.08 15 7 C -0.54 -14.79 9.54 -35.66 -0.34 -15.13 15 8 H 0.07 1.76 7.85 -52.49 -0.41 1.35 15 9 C 0.53 15.15 7.68 -13.05 -0.10 15.05 15 10 O -0.52 -17.64 13.42 -18.57 -0.25 -17.88 15 11 N -0.69 -15.36 5.23 -12.70 -0.07 -15.42 15 12 C 0.50 10.69 7.76 -10.99 -0.09 10.60 15 13 O -0.49 -13.24 14.43 -18.22 -0.26 -13.50 15 14 C -0.11 -1.60 5.83 -29.03 -0.17 -1.77 15 15 C -0.06 -0.90 4.37 -104.62 -0.46 -1.36 15 16 C -0.11 -1.56 9.70 -39.58 -0.38 -1.94 15 17 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 15 18 C -0.13 -1.60 10.05 -39.58 -0.40 -2.00 15 19 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 15 20 C -0.11 -1.56 9.70 -39.58 -0.38 -1.94 15 21 H 0.27 7.39 8.29 -40.82 -0.34 7.05 15 22 H 0.39 6.72 8.67 -40.82 -0.35 6.37 15 23 H 0.10 1.17 8.09 -51.93 -0.42 0.75 15 24 H 0.10 1.16 8.08 -51.93 -0.42 0.74 15 25 H 0.12 1.59 8.06 -52.48 -0.42 1.17 15 26 H 0.12 1.27 8.06 -52.49 -0.42 0.85 15 27 H 0.12 1.16 8.06 -52.49 -0.42 0.74 15 28 H 0.12 1.27 8.06 -52.49 -0.42 0.85 15 29 H 0.12 1.59 8.06 -52.49 -0.42 1.17 15 LS Contribution 267.29 15.07 4.03 4.03 Total: -1.00 -38.19 267.29 -6.98 -45.18 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -2.85 Total: 5.44 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -3.21 Total: -0.30 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.59 Total: -37.44 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.51 Total: -31.39 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -38.19 -6.98 -45.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075602380.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.805 kcal (2) G-P(sol) polarization free energy of solvation -38.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds