Wall clock time and date at job start Mon Mar 30 2020 03:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86797 * 120.00275 * 2 1 4 4 H 1.48495 * 109.47316 * 239.99538 * 3 2 1 5 5 H 1.48506 * 109.46897 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47311 * 119.99499 * 3 2 1 7 7 C 1.40141 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00311 * 180.02562 * 7 2 1 9 9 C 1.46224 * 119.99648 * 0.02562 * 7 2 1 10 10 O 1.21651 * 120.00184 * 359.97438 * 9 7 2 11 11 N 1.34782 * 119.99505 * 179.97438 * 9 7 2 12 12 C 1.34773 * 119.99588 * 179.97438 * 11 9 7 13 13 O 1.21246 * 120.00164 * 359.97438 * 12 11 9 14 14 C 1.50698 * 119.99781 * 180.02562 * 12 11 9 15 15 C 1.50707 * 109.47247 * 180.02562 * 14 12 11 16 16 C 1.38238 * 119.99792 * 89.99994 * 15 14 12 17 17 C 1.38235 * 119.99712 * 179.97438 * 16 15 14 18 18 C 1.38234 * 120.00220 * 359.97124 * 17 16 15 19 19 C 1.38233 * 120.00037 * 0.28719 * 18 17 16 20 20 C 1.38234 * 120.00179 * 269.97930 * 15 14 12 21 21 H 0.97004 * 119.99648 * 0.02562 * 1 2 3 22 22 H 0.96998 * 119.99981 * 0.02562 * 11 9 7 23 23 H 1.09005 * 109.47656 * 60.00320 * 14 12 11 24 24 H 1.09000 * 109.47265 * 299.99628 * 14 12 11 25 25 H 1.08005 * 120.00068 * 359.97438 * 16 15 14 26 26 H 1.07999 * 119.99770 * 179.97438 * 17 16 15 27 27 H 1.08002 * 119.99744 * 180.02562 * 18 17 16 28 28 H 1.07998 * 120.00395 * 179.72811 * 19 18 17 29 29 H 1.07999 * 119.99968 * 359.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0942 1.6963 -1.2124 5 1 1.2754 2.7464 -0.0006 6 1 3.0941 1.6964 1.2125 7 6 2.0070 -1.2137 0.0005 8 1 3.0870 -1.2137 0.0010 9 6 1.2758 -2.4800 0.0005 10 8 0.0593 -2.4799 0.0005 11 7 1.9497 -3.6472 0.0005 12 6 1.2758 -4.8143 0.0011 13 8 0.0633 -4.8143 0.0020 14 6 2.0292 -6.1194 0.0016 15 6 1.0499 -7.2649 0.0015 16 6 0.6012 -7.7905 -1.1957 17 6 -0.2967 -8.8415 -1.1958 18 6 -0.7454 -9.3674 0.0012 19 6 -0.3009 -8.8383 1.1985 20 6 0.6006 -7.7903 1.1986 21 1 -0.4850 0.8401 -0.0004 22 1 2.9197 -3.6472 0.0009 23 1 2.6559 -6.1769 0.8917 24 1 2.6559 -6.1776 -0.8883 25 1 0.9522 -7.3800 -2.1310 26 1 -0.6475 -9.2519 -2.1312 27 1 -1.4466 -10.1888 0.0011 28 1 -0.6548 -9.2462 2.1337 29 1 0.9517 -7.3802 2.1339 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075602380.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:38 Heat of formation + Delta-G solvation = -83.157397 kcal Electronic energy + Delta-G solvation = -15325.925614 eV Core-core repulsion = 12598.625632 eV Total energy + Delta-G solvation = -2727.299981 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.41222 -39.91225 -38.12528 -35.04987 -34.62818 -33.61828 -31.75364 -29.30448 -28.22816 -24.09046 -23.46158 -22.12286 -20.88807 -19.62372 -17.78230 -17.67524 -17.45800 -16.69297 -16.22682 -15.86204 -15.66316 -15.09194 -14.54971 -14.30257 -14.10735 -13.95504 -13.36581 -13.26766 -12.89441 -12.78784 -12.70052 -12.09299 -11.99024 -11.85203 -11.28373 -11.00220 -10.48595 -9.84621 -9.78211 -9.54519 -8.37205 -7.02051 0.43429 0.53745 1.33079 1.40868 1.57118 1.57753 2.19022 2.50493 2.56917 3.03669 3.55305 3.69713 3.97277 4.15102 4.22044 4.28865 4.41515 4.57606 4.67501 4.79334 5.13567 5.17875 5.23144 5.44618 5.57255 5.62560 5.69661 5.92296 6.10184 6.17601 6.67575 6.81281 7.58892 8.31528 8.54496 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.067721 B = 0.005024 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.361102 B = 5572.231573 C = 5681.105825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.021 3.979 3 Si 1.009 2.991 4 H -0.249 1.249 5 H -0.278 1.278 6 H -0.249 1.249 7 C -0.560 4.560 8 H 0.107 0.893 9 C 0.509 3.491 10 O -0.585 6.585 11 N -0.683 5.683 12 C 0.492 3.508 13 O -0.549 6.549 14 C -0.090 4.090 15 C -0.085 4.085 16 C -0.126 4.126 17 C -0.130 4.130 18 C -0.129 4.129 19 C -0.130 4.130 20 C -0.126 4.126 21 H 0.278 0.722 22 H 0.419 0.581 23 H 0.134 0.866 24 H 0.134 0.866 25 H 0.126 0.874 26 H 0.142 0.858 27 H 0.146 0.854 28 H 0.142 0.858 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.626 -13.626 0.002 16.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.195 4.195 3 Si 0.827 3.173 4 H -0.172 1.172 5 H -0.203 1.203 6 H -0.172 1.172 7 C -0.595 4.595 8 H 0.125 0.875 9 C 0.316 3.684 10 O -0.468 6.468 11 N -0.346 5.346 12 C 0.280 3.720 13 O -0.424 6.424 14 C -0.129 4.129 15 C -0.086 4.086 16 C -0.144 4.144 17 C -0.148 4.148 18 C -0.147 4.147 19 C -0.148 4.148 20 C -0.144 4.144 21 H 0.088 0.912 22 H 0.255 0.745 23 H 0.152 0.848 24 H 0.152 0.848 25 H 0.144 0.856 26 H 0.160 0.840 27 H 0.164 0.836 28 H 0.160 0.840 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.880 -13.554 0.002 15.201 hybrid contribution 0.322 0.835 0.000 0.895 sum 7.202 -12.720 0.002 14.617 Atomic orbital electron populations 1.70193 1.10055 1.29667 1.34793 1.27221 0.95549 1.05654 0.91028 0.84898 0.78004 0.73637 0.80723 1.17242 1.20296 1.17232 1.21542 0.95483 0.88982 1.53471 0.87472 1.19142 0.87384 0.84344 0.77553 1.90696 1.16155 1.87169 1.52806 1.44993 1.12531 1.06678 1.70431 1.21851 0.88292 0.86877 0.74940 1.90746 1.16766 1.88356 1.46549 1.20820 0.97268 0.86712 1.08130 1.19593 0.98807 0.95958 0.94207 1.21279 0.98342 0.97082 0.97675 1.21434 0.97290 0.96674 0.99402 1.21490 1.00137 1.00786 0.92282 1.21435 0.97273 0.96693 0.99404 1.21277 0.98305 0.97112 0.97678 0.91158 0.74482 0.84778 0.84789 0.85618 0.84008 0.83589 0.84013 0.85620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.41 11.83 21.85 0.26 -50.15 15 2 C 0.02 1.17 5.50 85.33 0.47 1.64 15 3 Si 1.01 39.21 29.56 68.60 2.03 41.24 15 4 H -0.25 -8.91 7.11 99.48 0.71 -8.20 15 5 H -0.28 -10.64 7.11 99.48 0.71 -9.93 15 6 H -0.25 -8.91 7.11 99.48 0.71 -8.20 15 7 C -0.56 -30.50 9.54 24.81 0.24 -30.26 15 8 H 0.11 4.90 7.85 -2.91 -0.02 4.88 15 9 C 0.51 29.94 7.68 86.32 0.66 30.60 15 10 O -0.59 -41.78 13.42 18.57 0.25 -41.53 15 11 N -0.68 -30.19 5.23 -430.74 -2.25 -32.45 15 12 C 0.49 21.26 7.76 87.66 0.68 21.95 15 13 O -0.55 -31.08 14.43 19.84 0.29 -30.79 15 14 C -0.09 -2.47 5.83 29.10 0.17 -2.30 15 15 C -0.09 -2.57 4.37 -19.86 -0.09 -2.65 15 16 C -0.13 -3.60 9.70 22.27 0.22 -3.39 15 17 C -0.13 -3.26 10.05 22.27 0.22 -3.04 15 18 C -0.13 -3.03 10.05 22.27 0.22 -2.81 15 19 C -0.13 -3.26 10.05 22.27 0.22 -3.04 15 20 C -0.13 -3.60 9.70 22.27 0.22 -3.39 15 21 H 0.28 15.52 8.29 -92.70 -0.77 14.75 15 22 H 0.42 13.61 8.67 -92.71 -0.80 12.81 15 23 H 0.13 2.74 8.09 -2.38 -0.02 2.72 15 24 H 0.13 2.74 8.08 -2.39 -0.02 2.72 15 25 H 0.13 3.27 8.06 -2.91 -0.02 3.25 15 26 H 0.14 2.76 8.06 -2.91 -0.02 2.74 15 27 H 0.15 2.49 8.06 -2.91 -0.02 2.47 15 28 H 0.14 2.76 8.06 -2.91 -0.02 2.74 15 29 H 0.13 3.27 8.06 -2.91 -0.02 3.25 15 Total: -1.00 -88.54 267.29 4.17 -84.36 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: 0.37 Total: 25.99 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 3.24 Total: 3.32 kcal Atomic # 7 Polarization: -80.60 SS G_CDS: -2.00 Total: -82.60 kcal Atomic # 8 Polarization: -72.85 SS G_CDS: 0.54 Total: -72.32 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.24 kcal Total: -88.54 4.17 -84.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075602380.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.207 kcal (2) G-P(sol) polarization free energy of solvation -88.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds