Wall clock time and date at job start Mon Mar 30 2020 03:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.40176 * 120.51613 * 2 1 4 4 C 1.37761 * 120.65021 * 15.50232 * 3 2 1 5 5 C 1.40832 * 119.50296 * 180.02562 * 4 3 2 6 6 C 1.41197 * 120.15263 * 180.02562 * 5 4 3 7 7 H 1.08000 * 120.00370 * 204.51732 * 6 5 4 8 8 C 1.39868 * 119.99903 * 24.50907 * 6 5 4 9 9 N 1.30885 * 120.00221 * 17.94472 * 8 6 5 10 10 Si 1.86806 * 120.00007 * 197.94487 * 8 6 5 11 11 H 1.48505 * 109.46882 * 60.00414 * 10 8 6 12 12 H 1.48493 * 109.47228 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47311 * 300.00299 * 10 8 6 14 14 C 1.40867 * 119.69998 * 0.02562 * 5 4 3 15 15 C 1.36510 * 120.15110 * 359.97429 * 14 5 4 16 16 C 1.39038 * 120.30081 * 0.25232 * 15 14 5 17 17 O 1.35816 * 120.46474 * 180.36672 * 16 15 14 18 18 C 1.42974 * 116.84654 * 146.73237 * 17 16 15 19 19 C 1.35077 * 120.52077 * 179.97438 * 2 1 3 20 20 O 1.21293 * 120.12679 * 1.68340 * 19 2 1 21 21 H 1.09003 * 109.47271 * 90.00057 * 1 2 3 22 22 H 1.09002 * 109.47002 * 210.00016 * 1 2 3 23 23 H 1.09002 * 109.47171 * 329.99590 * 1 2 3 24 24 H 1.08005 * 120.24473 * 359.97438 * 4 3 2 25 25 H 0.97002 * 120.00397 * 179.97438 * 9 8 6 26 26 H 1.07996 * 119.92739 * 179.97438 * 14 5 4 27 27 H 1.07997 * 119.85243 * 179.97438 * 15 14 5 28 28 H 1.08994 * 109.43289 * 286.36503 * 18 17 16 29 29 H 1.09000 * 109.40015 * 166.47166 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1768 1.2076 0.0000 4 6 1.5496 2.3925 0.3168 5 6 2.2878 3.5918 0.3087 6 6 1.6589 4.8140 0.6317 7 1 2.0647 5.7443 0.2626 8 6 0.5101 4.8199 1.4295 9 7 0.2146 3.7742 2.1591 10 14 -0.6025 6.3203 1.4539 11 1 -1.1155 6.5783 0.0844 12 1 -1.7440 6.0753 2.3715 13 1 0.1672 7.4998 1.9245 14 6 3.6567 3.5666 -0.0231 15 6 4.2649 2.3849 -0.3348 16 6 3.5380 1.1997 -0.3324 17 8 4.1415 0.0211 -0.6348 18 6 3.6580 -1.1435 0.0390 19 6 2.1510 -1.1636 0.0005 20 8 1.5569 -2.2206 -0.0298 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 0.4993 2.4017 0.5686 25 1 -0.5819 3.7784 2.7127 26 1 4.2262 4.4841 -0.0308 27 1 5.3145 2.3712 -0.5889 28 1 3.9941 -1.1283 1.0757 29 1 4.0453 -2.0346 -0.4549 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082531605.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:38 Heat of formation + Delta-G solvation = -45.834463 kcal Electronic energy + Delta-G solvation = -16161.002895 eV Core-core repulsion = 13435.321358 eV Total energy + Delta-G solvation = -2725.681538 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.49654 -37.95543 -36.66191 -35.01398 -33.49723 -29.67836 -28.90458 -28.55785 -26.37681 -24.33639 -22.14263 -21.08423 -18.86021 -18.15049 -16.97473 -16.43259 -16.15864 -15.15198 -14.86479 -14.26591 -14.13059 -13.65123 -13.34287 -13.11905 -12.73804 -12.41351 -11.91773 -11.72748 -11.49156 -11.22660 -11.16108 -10.87382 -10.38926 -10.14466 -9.90276 -9.62250 -9.40083 -8.95217 -7.46071 -7.06255 -6.84345 -4.51955 2.19429 2.62614 2.95966 2.97542 3.00833 3.17061 3.30211 3.79129 4.20298 4.46194 4.70521 5.35876 5.46424 5.54974 5.73701 5.85801 5.90131 6.10949 6.33693 6.46748 6.56816 6.83760 6.99637 7.14976 7.26842 7.47468 7.69641 7.79266 7.91680 8.19840 8.31921 8.46921 8.66268 8.72795 9.98089 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.034025 B = 0.008574 C = 0.007071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.725085 B = 3265.020721 C = 3958.772032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.542 5.542 3 C 0.110 3.890 4 C -0.173 4.173 5 C 0.117 3.883 6 C -0.452 4.452 7 H 0.083 0.917 8 C 0.076 3.924 9 N -0.790 5.790 10 Si 0.911 3.089 11 H -0.262 1.262 12 H -0.278 1.278 13 H -0.264 1.264 14 C -0.215 4.215 15 C -0.072 4.072 16 C -0.063 4.063 17 O -0.313 6.313 18 C 0.054 3.946 19 C 0.484 3.516 20 O -0.546 6.546 21 H 0.056 0.944 22 H 0.073 0.927 23 H 0.087 0.913 24 H 0.133 0.867 25 H 0.284 0.716 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.082 0.918 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.801 -1.711 -1.168 2.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.266 5.266 3 C 0.017 3.983 4 C -0.195 4.195 5 C 0.114 3.886 6 C -0.481 4.481 7 H 0.101 0.899 8 C -0.143 4.143 9 N -0.415 5.415 10 Si 0.735 3.265 11 H -0.187 1.187 12 H -0.203 1.203 13 H -0.188 1.188 14 C -0.235 4.235 15 C -0.091 4.091 16 C -0.108 4.108 17 O -0.228 6.228 18 C -0.024 4.024 19 C 0.273 3.727 20 O -0.425 6.425 21 H 0.075 0.925 22 H 0.092 0.908 23 H 0.106 0.894 24 H 0.151 0.849 25 H 0.095 0.905 26 H 0.123 0.877 27 H 0.124 0.876 28 H 0.100 0.900 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.412 -2.424 -1.127 2.705 hybrid contribution -0.808 0.583 0.369 1.063 sum -0.396 -1.840 -0.758 2.029 Atomic orbital electron populations 1.21760 0.78517 1.03806 1.02079 1.45502 1.07179 1.05191 1.68759 1.18063 0.90450 0.85715 1.04053 1.20914 1.00775 0.89902 1.07864 1.17425 0.90259 0.92589 0.88336 1.19529 1.07856 0.94032 1.26692 0.89855 1.25958 0.97518 0.97732 0.93110 1.69823 1.23681 1.30049 1.17922 0.86310 0.79340 0.81516 0.79334 1.18652 1.20253 1.18817 1.20663 0.94926 0.95971 1.11895 1.19709 0.97784 0.90533 1.01123 1.18186 0.89362 0.85343 1.17898 1.86058 1.59794 1.13435 1.63558 1.22843 0.89238 0.90383 0.99980 1.21639 0.91580 0.83366 0.76082 1.90659 1.71313 1.30102 1.50399 0.92535 0.90783 0.89423 0.84912 0.90527 0.87690 0.87558 0.90043 0.85593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.47 10.23 59.85 0.61 2.09 15 2 N -0.54 -11.48 3.12 -120.58 -0.38 -11.86 15 3 C 0.11 2.52 6.38 -83.51 -0.53 1.99 15 4 C -0.17 -4.19 7.99 -38.78 -0.31 -4.50 15 5 C 0.12 2.89 5.58 -106.80 -0.60 2.29 15 6 C -0.45 -10.99 9.04 -37.85 -0.34 -11.33 15 7 H 0.08 1.92 7.91 -52.49 -0.41 1.51 15 8 C 0.08 1.74 5.13 -17.35 -0.09 1.65 15 9 N -0.79 -18.82 10.96 55.54 0.61 -18.22 15 10 Si 0.91 17.27 29.60 -169.99 -5.03 12.24 15 11 H -0.26 -4.95 7.11 56.52 0.40 -4.55 15 12 H -0.28 -5.17 7.11 56.52 0.40 -4.77 15 13 H -0.26 -4.96 7.11 56.52 0.40 -4.56 15 14 C -0.21 -4.84 9.73 -39.21 -0.38 -5.22 15 15 C -0.07 -1.56 9.92 -39.91 -0.40 -1.95 15 16 C -0.06 -1.41 6.48 -38.58 -0.25 -1.66 15 17 O -0.31 -6.37 10.43 -19.16 -0.20 -6.57 15 18 C 0.05 0.95 7.16 36.03 0.26 1.21 15 19 C 0.48 9.87 7.67 -10.82 -0.08 9.79 15 20 O -0.55 -11.81 16.77 5.55 0.09 -11.71 15 21 H 0.06 0.96 8.14 -51.93 -0.42 0.53 15 22 H 0.07 1.28 7.49 -51.93 -0.39 0.89 15 23 H 0.09 1.62 5.95 -51.93 -0.31 1.31 15 24 H 0.13 3.24 4.22 -52.48 -0.22 3.01 15 25 H 0.28 6.18 8.30 -40.82 -0.34 5.84 15 26 H 0.10 2.17 8.06 -52.49 -0.42 1.74 15 27 H 0.11 2.00 8.06 -52.49 -0.42 1.58 15 28 H 0.08 1.30 8.14 -51.93 -0.42 0.88 15 29 H 0.13 1.81 8.14 -51.93 -0.42 1.39 15 LS Contribution 251.90 15.07 3.80 3.80 Total: -1.00 -27.35 251.90 -5.80 -33.15 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -2.58 Total: 4.81 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -2.11 Total: -5.64 kcal Atomic # 7 Polarization: -30.31 SS G_CDS: 0.23 Total: -30.08 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.11 Total: -18.28 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.24 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -27.35 -5.80 -33.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082531605.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.684 kcal (2) G-P(sol) polarization free energy of solvation -27.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds