Wall clock time and date at job start Mon Mar 30 2020 03:27:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.39457 * 126.25625 * 2 1
4 4 C 1.38612 * 133.35833 * 359.97438 * 3 2 1
5 5 C 1.38129 * 119.82204 * 179.97438 * 4 3 2
6 6 C 1.50705 * 119.90480 * 180.02562 * 5 4 3
7 7 C 1.50702 * 109.46912 * 269.97894 * 6 5 4
8 8 H 1.07998 * 120.00024 * 359.97438 * 7 6 5
9 9 C 1.37879 * 120.00020 * 179.97438 * 7 6 5
10 10 N 1.31514 * 120.00360 * 179.97438 * 9 7 6
11 11 Si 1.86805 * 119.99740 * 0.02562 * 9 7 6
12 12 H 1.48499 * 109.47409 * 89.99744 * 11 9 7
13 13 H 1.48498 * 109.46878 * 209.99885 * 11 9 7
14 14 H 1.48502 * 109.46972 * 329.99368 * 11 9 7
15 15 C 1.38407 * 120.19004 * 359.97438 * 5 4 3
16 16 C 1.38129 * 120.30872 * 0.03584 * 15 5 4
17 17 C 1.38614 * 119.91546 * 0.26265 * 16 15 5
18 18 O 1.35558 * 132.99249 * 179.71720 * 17 16 15
19 19 C 1.34231 * 109.17234 * 179.97438 * 18 17 16
20 20 O 1.21601 * 125.27049 * 180.02562 * 19 18 17
21 21 H 1.08996 * 109.47513 * 90.00260 * 1 2 3
22 22 H 1.09004 * 109.46767 * 210.00244 * 1 2 3
23 23 H 1.08997 * 109.47397 * 329.99918 * 1 2 3
24 24 H 1.07994 * 120.08858 * 359.96071 * 4 3 2
25 25 H 1.08995 * 109.47175 * 29.97683 * 6 5 4
26 26 H 1.09002 * 109.47082 * 149.98603 * 6 5 4
27 27 H 0.97001 * 120.00078 * 180.02562 * 10 9 7
28 28 H 1.07996 * 119.84806 * 180.02562 * 15 5 4
29 29 H 1.08002 * 120.03785 * 179.97438 * 16 15 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2897 1.1246 0.0000
4 6 2.0398 2.4880 -0.0005
5 6 3.0948 3.3797 0.0002
6 6 2.8252 4.8624 0.0003
7 6 2.7366 5.3569 -1.4205
8 1 2.8633 4.6667 -2.2414
9 6 2.4939 6.6906 -1.6724
10 7 2.4171 7.1223 -2.9123
11 14 2.2755 7.8846 -0.2525
12 1 3.5951 8.4519 0.1247
13 1 1.3643 8.9824 -0.6645
14 1 1.6935 7.1687 0.9112
15 6 4.3986 2.9153 0.0019
16 6 4.6552 1.5581 0.0021
17 6 3.6031 0.6556 -0.0048
18 8 3.5471 -0.6988 -0.0113
19 6 2.2621 -1.0868 -0.0158
20 8 1.8769 -2.2402 -0.0216
21 1 -0.3634 0.0000 -1.0276
22 1 -0.3633 -0.8900 0.5139
23 1 -0.3634 0.8899 0.5138
24 1 1.0231 2.8521 -0.0016
25 1 1.8842 5.0606 0.5133
26 1 3.6355 5.3790 0.5149
27 1 2.2466 8.0607 -3.0895
28 1 5.2192 3.6174 0.0028
29 1 5.6743 1.2006 0.0030
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000082592151.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:27:32
Heat of formation + Delta-G solvation = -20.888639 kcal
Electronic energy + Delta-G solvation = -15608.639573 eV
Core-core repulsion = 12884.039767 eV
Total energy + Delta-G solvation = -2724.599805 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 233.084 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-43.01798 -38.52126 -37.35868 -35.86634 -33.27918 -31.31423 -30.08790 -28.07148
-27.25713 -23.59145 -22.56794 -21.56502 -21.23340 -17.95990 -17.36080 -17.33233
-16.89754 -16.06321 -14.97330 -14.59016 -14.31799 -14.14097 -13.88148 -13.51272
-13.10896 -12.68271 -12.52947 -12.17980 -11.86230 -11.66570 -11.29219 -10.79616
-10.61507 -10.59283 -10.20368 -10.00843 -9.50914 -8.70539 -8.29075 -7.79279
-6.19175 -4.20380 1.38699 1.51704 2.23084 2.58358 3.03695 3.19977
3.29017 3.29202 3.93212 4.30176 4.58964 4.63172 5.12444 5.17331
5.20727 5.39801 5.45619 5.49435 5.60991 5.68895 6.01481 6.21812
6.42422 6.59219 6.64318 6.78149 6.94481 7.26602 7.40145 7.53697
7.74304 8.34517 8.85080 9.39689 10.93358
Molecular weight = 233.08amu
Principal moments of inertia in cm(-1)
A = 0.042269 B = 0.006198 C = 0.005823
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 662.259909 B = 4516.371708 C = 4807.159700
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.102 3.898
2 N -0.549 5.549
3 C 0.066 3.934
4 C -0.102 4.102
5 C -0.006 4.006
6 C 0.016 3.984
7 C -0.520 4.520
8 H 0.075 0.925
9 C 0.072 3.928
10 N -0.896 5.896
11 Si 0.877 3.123
12 H -0.275 1.275
13 H -0.286 1.286
14 H -0.264 1.264
15 C -0.106 4.106
16 C -0.078 4.078
17 C 0.004 3.996
18 O -0.240 6.240
19 C 0.632 3.368
20 O -0.505 6.505
21 H 0.072 0.928
22 H 0.086 0.914
23 H 0.088 0.912
24 H 0.132 0.868
25 H 0.032 0.968
26 H 0.031 0.969
27 H 0.266 0.734
28 H 0.141 0.859
29 H 0.134 0.866
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.779 -8.497 7.672 11.474
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.039 4.039
2 N -0.281 5.281
3 C -0.031 4.031
4 C -0.123 4.123
5 C -0.007 4.007
6 C -0.021 4.021
7 C -0.558 4.558
8 H 0.093 0.907
9 C -0.131 4.131
10 N -0.534 5.534
11 Si 0.704 3.296
12 H -0.200 1.200
13 H -0.212 1.212
14 H -0.189 1.189
15 C -0.125 4.125
16 C -0.097 4.097
17 C -0.042 4.042
18 O -0.145 6.145
19 C 0.388 3.612
20 O -0.391 6.391
21 H 0.091 0.909
22 H 0.105 0.895
23 H 0.106 0.894
24 H 0.150 0.850
25 H 0.050 0.950
26 H 0.049 0.951
27 H 0.076 0.924
28 H 0.159 0.841
29 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges -0.924 -9.188 7.556 11.932
hybrid contribution -0.304 0.673 0.451 0.865
sum -1.228 -8.515 8.007 11.753
Atomic orbital electron populations
1.21763 0.74094 1.04426 1.03568 1.45629 1.08082 1.05105 1.69293
1.18542 0.88678 0.89795 1.06064 1.20011 1.00854 0.87288 1.04154
1.20177 0.91448 0.97643 0.91459 1.18845 0.97663 0.86620 0.99023
1.20880 1.50196 0.94521 0.90155 0.90654 1.24991 0.94422 0.98125
0.95534 1.69889 1.48879 1.15810 1.18783 0.86816 0.78633 0.81066
0.83059 1.20027 1.21204 1.18875 1.20955 0.97572 0.93214 1.00723
1.19963 0.96602 0.90849 1.02306 1.18894 0.94629 0.79833 1.10811
1.84905 1.27460 1.21598 1.80583 1.18509 0.78802 0.85286 0.78605
1.91103 1.74586 1.16315 1.57049 0.90906 0.89501 0.89365 0.84964
0.94986 0.95096 0.92422 0.84098 0.84765
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 1.10 11.06 59.85 0.66 1.76 15
2 N -0.55 -8.31 3.21 -126.44 -0.41 -8.71 15
3 C 0.07 1.07 6.84 -83.80 -0.57 0.50 15
4 C -0.10 -1.72 9.68 -39.48 -0.38 -2.10 15
5 C -0.01 -0.11 5.07 -104.60 -0.53 -0.64 15
6 C 0.02 0.33 4.17 -29.03 -0.12 0.21 15
7 C -0.52 -13.52 9.65 -34.44 -0.33 -13.85 15
8 H 0.08 2.17 7.98 -52.49 -0.42 1.75 15
9 C 0.07 1.93 5.47 -17.82 -0.10 1.84 15
10 N -0.90 -26.03 13.96 55.43 0.77 -25.26 15
11 Si 0.88 19.83 27.47 -169.99 -4.67 15.16 15
12 H -0.27 -6.11 7.11 56.52 0.40 -5.70 15
13 H -0.29 -6.52 7.11 56.52 0.40 -6.12 15
14 H -0.26 -5.63 6.54 56.52 0.37 -5.26 15
15 C -0.11 -1.70 9.68 -39.56 -0.38 -2.08 15
16 C -0.08 -1.16 10.06 -39.48 -0.40 -1.55 15
17 C 0.00 0.06 7.35 -38.99 -0.29 -0.22 15
18 O -0.24 -4.12 10.72 -21.99 -0.24 -4.36 15
19 C 0.63 10.87 9.07 54.06 0.49 11.36 15
20 O -0.51 -9.55 17.81 -19.01 -0.34 -9.89 15
21 H 0.07 0.72 8.14 -51.93 -0.42 0.30 15
22 H 0.09 0.84 8.07 -51.93 -0.42 0.42 15
23 H 0.09 0.79 8.14 -51.93 -0.42 0.37 15
24 H 0.13 2.05 8.06 -52.49 -0.42 1.63 15
25 H 0.03 0.66 7.14 -51.93 -0.37 0.29 15
26 H 0.03 0.63 7.51 -51.93 -0.39 0.24 15
27 H 0.27 7.23 8.31 -40.82 -0.34 6.89 15
28 H 0.14 2.04 8.06 -52.49 -0.42 1.61 15
29 H 0.13 1.59 8.06 -52.49 -0.42 1.17 15
LS Contribution 261.51 15.07 3.94 3.94
Total: -1.00 -30.55 261.51 -5.77 -36.31
By element:
Atomic # 1 Polarization: 0.46 SS G_CDS: -2.88 Total: -2.42 kcal
Atomic # 6 Polarization: -2.83 SS G_CDS: -1.95 Total: -4.78 kcal
Atomic # 7 Polarization: -34.34 SS G_CDS: 0.37 Total: -33.97 kcal
Atomic # 8 Polarization: -13.67 SS G_CDS: -0.57 Total: -14.24 kcal
Atomic # 14 Polarization: 19.83 SS G_CDS: -4.67 Total: 15.16 kcal
Total LS contribution 3.94 Total: 3.94 kcal
Total: -30.55 -5.77 -36.31 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000082592151.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.424 kcal
(2) G-P(sol) polarization free energy of solvation -30.546 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.123 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.766 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.312 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.889 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds