Wall clock time and date at job start Mon Mar 30 2020 03:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.39457 * 126.25625 * 2 1 4 4 C 1.38612 * 133.35833 * 359.97438 * 3 2 1 5 5 C 1.38129 * 119.82204 * 179.97438 * 4 3 2 6 6 C 1.50705 * 119.90480 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.46912 * 269.97894 * 6 5 4 8 8 H 1.07998 * 120.00024 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00020 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00360 * 179.97438 * 9 7 6 11 11 Si 1.86805 * 119.99740 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47409 * 89.99744 * 11 9 7 13 13 H 1.48498 * 109.46878 * 209.99885 * 11 9 7 14 14 H 1.48502 * 109.46972 * 329.99368 * 11 9 7 15 15 C 1.38407 * 120.19004 * 359.97438 * 5 4 3 16 16 C 1.38129 * 120.30872 * 0.03584 * 15 5 4 17 17 C 1.38614 * 119.91546 * 0.26265 * 16 15 5 18 18 O 1.35558 * 132.99249 * 179.71720 * 17 16 15 19 19 C 1.34231 * 109.17234 * 179.97438 * 18 17 16 20 20 O 1.21601 * 125.27049 * 180.02562 * 19 18 17 21 21 H 1.08996 * 109.47513 * 90.00260 * 1 2 3 22 22 H 1.09004 * 109.46767 * 210.00244 * 1 2 3 23 23 H 1.08997 * 109.47397 * 329.99918 * 1 2 3 24 24 H 1.07994 * 120.08858 * 359.96071 * 4 3 2 25 25 H 1.08995 * 109.47175 * 29.97683 * 6 5 4 26 26 H 1.09002 * 109.47082 * 149.98603 * 6 5 4 27 27 H 0.97001 * 120.00078 * 180.02562 * 10 9 7 28 28 H 1.07996 * 119.84806 * 180.02562 * 15 5 4 29 29 H 1.08002 * 120.03785 * 179.97438 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2897 1.1246 0.0000 4 6 2.0398 2.4880 -0.0005 5 6 3.0948 3.3797 0.0002 6 6 2.8252 4.8624 0.0003 7 6 2.7366 5.3569 -1.4205 8 1 2.8633 4.6667 -2.2414 9 6 2.4939 6.6906 -1.6724 10 7 2.4171 7.1223 -2.9123 11 14 2.2755 7.8846 -0.2525 12 1 3.5951 8.4519 0.1247 13 1 1.3643 8.9824 -0.6645 14 1 1.6935 7.1687 0.9112 15 6 4.3986 2.9153 0.0019 16 6 4.6552 1.5581 0.0021 17 6 3.6031 0.6556 -0.0048 18 8 3.5471 -0.6988 -0.0113 19 6 2.2621 -1.0868 -0.0158 20 8 1.8769 -2.2402 -0.0216 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8899 0.5138 24 1 1.0231 2.8521 -0.0016 25 1 1.8842 5.0606 0.5133 26 1 3.6355 5.3790 0.5149 27 1 2.2466 8.0607 -3.0895 28 1 5.2192 3.6174 0.0028 29 1 5.6743 1.2006 0.0030 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082592151.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:32 Heat of formation + Delta-G solvation = -20.888639 kcal Electronic energy + Delta-G solvation = -15608.639573 eV Core-core repulsion = 12884.039767 eV Total energy + Delta-G solvation = -2724.599805 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.01798 -38.52126 -37.35868 -35.86634 -33.27918 -31.31423 -30.08790 -28.07148 -27.25713 -23.59145 -22.56794 -21.56502 -21.23340 -17.95990 -17.36080 -17.33233 -16.89754 -16.06321 -14.97330 -14.59016 -14.31799 -14.14097 -13.88148 -13.51272 -13.10896 -12.68271 -12.52947 -12.17980 -11.86230 -11.66570 -11.29219 -10.79616 -10.61507 -10.59283 -10.20368 -10.00843 -9.50914 -8.70539 -8.29075 -7.79279 -6.19175 -4.20380 1.38699 1.51704 2.23084 2.58358 3.03695 3.19977 3.29017 3.29202 3.93212 4.30176 4.58964 4.63172 5.12444 5.17331 5.20727 5.39801 5.45619 5.49435 5.60991 5.68895 6.01481 6.21812 6.42422 6.59219 6.64318 6.78149 6.94481 7.26602 7.40145 7.53697 7.74304 8.34517 8.85080 9.39689 10.93358 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.042269 B = 0.006198 C = 0.005823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.259909 B = 4516.371708 C = 4807.159700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.549 5.549 3 C 0.066 3.934 4 C -0.102 4.102 5 C -0.006 4.006 6 C 0.016 3.984 7 C -0.520 4.520 8 H 0.075 0.925 9 C 0.072 3.928 10 N -0.896 5.896 11 Si 0.877 3.123 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.264 1.264 15 C -0.106 4.106 16 C -0.078 4.078 17 C 0.004 3.996 18 O -0.240 6.240 19 C 0.632 3.368 20 O -0.505 6.505 21 H 0.072 0.928 22 H 0.086 0.914 23 H 0.088 0.912 24 H 0.132 0.868 25 H 0.032 0.968 26 H 0.031 0.969 27 H 0.266 0.734 28 H 0.141 0.859 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.779 -8.497 7.672 11.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.281 5.281 3 C -0.031 4.031 4 C -0.123 4.123 5 C -0.007 4.007 6 C -0.021 4.021 7 C -0.558 4.558 8 H 0.093 0.907 9 C -0.131 4.131 10 N -0.534 5.534 11 Si 0.704 3.296 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.189 1.189 15 C -0.125 4.125 16 C -0.097 4.097 17 C -0.042 4.042 18 O -0.145 6.145 19 C 0.388 3.612 20 O -0.391 6.391 21 H 0.091 0.909 22 H 0.105 0.895 23 H 0.106 0.894 24 H 0.150 0.850 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.076 0.924 28 H 0.159 0.841 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.924 -9.188 7.556 11.932 hybrid contribution -0.304 0.673 0.451 0.865 sum -1.228 -8.515 8.007 11.753 Atomic orbital electron populations 1.21763 0.74094 1.04426 1.03568 1.45629 1.08082 1.05105 1.69293 1.18542 0.88678 0.89795 1.06064 1.20011 1.00854 0.87288 1.04154 1.20177 0.91448 0.97643 0.91459 1.18845 0.97663 0.86620 0.99023 1.20880 1.50196 0.94521 0.90155 0.90654 1.24991 0.94422 0.98125 0.95534 1.69889 1.48879 1.15810 1.18783 0.86816 0.78633 0.81066 0.83059 1.20027 1.21204 1.18875 1.20955 0.97572 0.93214 1.00723 1.19963 0.96602 0.90849 1.02306 1.18894 0.94629 0.79833 1.10811 1.84905 1.27460 1.21598 1.80583 1.18509 0.78802 0.85286 0.78605 1.91103 1.74586 1.16315 1.57049 0.90906 0.89501 0.89365 0.84964 0.94986 0.95096 0.92422 0.84098 0.84765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.10 11.06 59.85 0.66 1.76 15 2 N -0.55 -8.31 3.21 -126.44 -0.41 -8.71 15 3 C 0.07 1.07 6.84 -83.80 -0.57 0.50 15 4 C -0.10 -1.72 9.68 -39.48 -0.38 -2.10 15 5 C -0.01 -0.11 5.07 -104.60 -0.53 -0.64 15 6 C 0.02 0.33 4.17 -29.03 -0.12 0.21 15 7 C -0.52 -13.52 9.65 -34.44 -0.33 -13.85 15 8 H 0.08 2.17 7.98 -52.49 -0.42 1.75 15 9 C 0.07 1.93 5.47 -17.82 -0.10 1.84 15 10 N -0.90 -26.03 13.96 55.43 0.77 -25.26 15 11 Si 0.88 19.83 27.47 -169.99 -4.67 15.16 15 12 H -0.27 -6.11 7.11 56.52 0.40 -5.70 15 13 H -0.29 -6.52 7.11 56.52 0.40 -6.12 15 14 H -0.26 -5.63 6.54 56.52 0.37 -5.26 15 15 C -0.11 -1.70 9.68 -39.56 -0.38 -2.08 15 16 C -0.08 -1.16 10.06 -39.48 -0.40 -1.55 15 17 C 0.00 0.06 7.35 -38.99 -0.29 -0.22 15 18 O -0.24 -4.12 10.72 -21.99 -0.24 -4.36 15 19 C 0.63 10.87 9.07 54.06 0.49 11.36 15 20 O -0.51 -9.55 17.81 -19.01 -0.34 -9.89 15 21 H 0.07 0.72 8.14 -51.93 -0.42 0.30 15 22 H 0.09 0.84 8.07 -51.93 -0.42 0.42 15 23 H 0.09 0.79 8.14 -51.93 -0.42 0.37 15 24 H 0.13 2.05 8.06 -52.49 -0.42 1.63 15 25 H 0.03 0.66 7.14 -51.93 -0.37 0.29 15 26 H 0.03 0.63 7.51 -51.93 -0.39 0.24 15 27 H 0.27 7.23 8.31 -40.82 -0.34 6.89 15 28 H 0.14 2.04 8.06 -52.49 -0.42 1.61 15 29 H 0.13 1.59 8.06 -52.49 -0.42 1.17 15 LS Contribution 261.51 15.07 3.94 3.94 Total: -1.00 -30.55 261.51 -5.77 -36.31 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: -2.88 Total: -2.42 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -1.95 Total: -4.78 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.37 Total: -33.97 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.57 Total: -14.24 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.67 Total: 15.16 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.55 -5.77 -36.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082592151.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.424 kcal (2) G-P(sol) polarization free energy of solvation -30.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds