Wall clock time and date at job start Mon Mar 30 2020 03:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.39457 * 126.25625 * 2 1 4 4 C 1.38612 * 133.35833 * 359.97438 * 3 2 1 5 5 C 1.38129 * 119.82204 * 179.97438 * 4 3 2 6 6 C 1.50705 * 119.90480 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.46912 * 269.97894 * 6 5 4 8 8 H 1.07998 * 120.00024 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00020 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00360 * 179.97438 * 9 7 6 11 11 Si 1.86805 * 119.99740 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47409 * 89.99744 * 11 9 7 13 13 H 1.48498 * 109.46878 * 209.99885 * 11 9 7 14 14 H 1.48502 * 109.46972 * 329.99368 * 11 9 7 15 15 C 1.38407 * 120.19004 * 359.97438 * 5 4 3 16 16 C 1.38129 * 120.30872 * 0.03584 * 15 5 4 17 17 C 1.38614 * 119.91546 * 0.26265 * 16 15 5 18 18 O 1.35558 * 132.99249 * 179.71720 * 17 16 15 19 19 C 1.34231 * 109.17234 * 179.97438 * 18 17 16 20 20 O 1.21601 * 125.27049 * 180.02562 * 19 18 17 21 21 H 1.08996 * 109.47513 * 90.00260 * 1 2 3 22 22 H 1.09004 * 109.46767 * 210.00244 * 1 2 3 23 23 H 1.08997 * 109.47397 * 329.99918 * 1 2 3 24 24 H 1.07994 * 120.08858 * 359.96071 * 4 3 2 25 25 H 1.08995 * 109.47175 * 29.97683 * 6 5 4 26 26 H 1.09002 * 109.47082 * 149.98603 * 6 5 4 27 27 H 0.97001 * 120.00078 * 180.02562 * 10 9 7 28 28 H 1.07996 * 119.84806 * 180.02562 * 15 5 4 29 29 H 1.08002 * 120.03785 * 179.97438 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2897 1.1246 0.0000 4 6 2.0398 2.4880 -0.0005 5 6 3.0948 3.3797 0.0002 6 6 2.8252 4.8624 0.0003 7 6 2.7366 5.3569 -1.4205 8 1 2.8633 4.6667 -2.2414 9 6 2.4939 6.6906 -1.6724 10 7 2.4171 7.1223 -2.9123 11 14 2.2755 7.8846 -0.2525 12 1 3.5951 8.4519 0.1247 13 1 1.3643 8.9824 -0.6645 14 1 1.6935 7.1687 0.9112 15 6 4.3986 2.9153 0.0019 16 6 4.6552 1.5581 0.0021 17 6 3.6031 0.6556 -0.0048 18 8 3.5471 -0.6988 -0.0113 19 6 2.2621 -1.0868 -0.0158 20 8 1.8769 -2.2402 -0.0216 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8899 0.5138 24 1 1.0231 2.8521 -0.0016 25 1 1.8842 5.0606 0.5133 26 1 3.6355 5.3790 0.5149 27 1 2.2466 8.0607 -3.0895 28 1 5.2192 3.6174 0.0028 29 1 5.6743 1.2006 0.0030 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082592151.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:32 Heat of formation + Delta-G solvation = -39.196910 kcal Electronic energy + Delta-G solvation = -15609.433479 eV Core-core repulsion = 12884.039767 eV Total energy + Delta-G solvation = -2725.393712 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.30287 -39.85217 -38.69798 -37.11397 -35.12280 -32.94962 -31.32446 -29.39176 -28.61979 -25.22879 -23.84219 -22.81434 -22.72250 -19.25429 -18.92202 -18.65298 -18.60233 -17.40919 -16.29946 -16.14573 -15.82880 -15.17186 -15.11297 -14.96196 -14.48102 -14.35865 -13.72228 -13.46967 -13.44877 -13.06449 -12.70312 -12.38994 -12.07935 -12.00300 -11.74163 -11.60475 -11.35419 -10.73223 -9.58775 -9.10933 -8.24040 -6.29836 0.12569 0.19527 1.02974 1.27414 1.44673 1.46356 1.56834 1.77779 2.41101 2.63404 3.11452 3.35733 3.55987 3.93365 4.20632 4.31322 4.38514 4.39683 4.46958 4.65281 4.75209 4.96042 5.12037 5.17276 5.22504 5.30813 5.54070 5.65609 5.82442 6.12055 6.30211 6.45837 6.78011 7.34146 8.92138 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.042269 B = 0.006198 C = 0.005823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.259909 B = 4516.371708 C = 4807.159700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.542 5.542 3 C 0.062 3.938 4 C -0.103 4.103 5 C -0.031 4.031 6 C 0.020 3.980 7 C -0.519 4.519 8 H 0.031 0.969 9 C 0.009 3.991 10 N -0.951 5.951 11 Si 0.948 3.052 12 H -0.265 1.265 13 H -0.291 1.291 14 H -0.238 1.238 15 C -0.106 4.106 16 C -0.066 4.066 17 C -0.007 4.007 18 O -0.246 6.246 19 C 0.627 3.373 20 O -0.528 6.528 21 H 0.082 0.918 22 H 0.098 0.902 23 H 0.109 0.891 24 H 0.142 0.858 25 H 0.041 0.959 26 H 0.045 0.955 27 H 0.266 0.734 28 H 0.157 0.843 29 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.676 -8.397 9.564 12.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.274 5.274 3 C -0.036 4.036 4 C -0.123 4.123 5 C -0.032 4.032 6 C -0.017 4.017 7 C -0.557 4.557 8 H 0.049 0.951 9 C -0.189 4.189 10 N -0.591 5.591 11 Si 0.771 3.229 12 H -0.190 1.190 13 H -0.218 1.218 14 H -0.161 1.161 15 C -0.124 4.124 16 C -0.085 4.085 17 C -0.053 4.053 18 O -0.152 6.152 19 C 0.382 3.618 20 O -0.416 6.416 21 H 0.101 0.899 22 H 0.117 0.883 23 H 0.127 0.873 24 H 0.160 0.840 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.175 0.825 29 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.831 -9.099 9.467 13.158 hybrid contribution -0.319 0.550 -0.207 0.669 sum -1.150 -8.550 9.261 12.656 Atomic orbital electron populations 1.22142 0.71750 1.06115 1.04793 1.45826 1.09369 1.04053 1.68116 1.18563 0.89047 0.89856 1.06095 1.20035 1.01118 0.87338 1.03830 1.20065 0.92917 0.96389 0.93799 1.18709 0.98551 0.88662 0.95757 1.21149 1.48876 0.93862 0.91809 0.95081 1.25958 0.94267 1.00370 0.98263 1.70061 1.51170 1.16307 1.21574 0.85694 0.78913 0.78247 0.80040 1.19038 1.21762 1.16109 1.21147 0.97197 0.94092 0.99975 1.20252 0.97835 0.89967 1.00428 1.19265 0.95378 0.79712 1.10935 1.84873 1.27776 1.22033 1.80488 1.18591 0.78952 0.85432 0.78785 1.91079 1.74957 1.17203 1.58332 0.89930 0.88322 0.87253 0.84027 0.94127 0.93650 0.92499 0.82537 0.81527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.78 11.06 127.77 1.41 3.19 15 2 N -0.54 -15.57 3.21 -784.50 -2.52 -18.09 15 3 C 0.06 1.91 6.84 38.31 0.26 2.17 15 4 C -0.10 -3.28 9.68 22.33 0.22 -3.07 15 5 C -0.03 -1.07 5.07 -19.85 -0.10 -1.17 15 6 C 0.02 0.82 4.17 29.10 0.12 0.94 15 7 C -0.52 -27.09 9.65 25.60 0.25 -26.84 15 8 H 0.03 1.84 7.98 -2.91 -0.02 1.82 15 9 C 0.01 0.46 5.47 84.66 0.46 0.92 15 10 N -0.95 -56.54 13.96 21.45 0.30 -56.25 15 11 Si 0.95 39.99 27.47 68.60 1.88 41.88 15 12 H -0.27 -10.75 7.11 99.48 0.71 -10.04 15 13 H -0.29 -12.46 7.11 99.48 0.71 -11.75 15 14 H -0.24 -8.96 6.54 99.48 0.65 -8.31 15 15 C -0.11 -3.14 9.68 22.28 0.22 -2.93 15 16 C -0.07 -1.79 10.06 22.33 0.22 -1.57 15 17 C -0.01 -0.23 7.35 22.65 0.17 -0.06 15 18 O -0.25 -8.14 10.72 8.51 0.09 -8.05 15 19 C 0.63 20.91 9.07 129.79 1.18 22.09 15 20 O -0.53 -19.63 17.81 19.18 0.34 -19.28 15 21 H 0.08 1.49 8.14 -2.39 -0.02 1.47 15 22 H 0.10 1.73 8.07 -2.38 -0.02 1.71 15 23 H 0.11 1.69 8.14 -2.39 -0.02 1.67 15 24 H 0.14 4.14 8.06 -2.91 -0.02 4.12 15 25 H 0.04 1.57 7.14 -2.39 -0.02 1.55 15 26 H 0.05 1.70 7.51 -2.39 -0.02 1.68 15 27 H 0.27 14.82 8.31 -92.71 -0.77 14.05 15 28 H 0.16 4.11 8.06 -2.91 -0.02 4.09 15 29 H 0.17 3.36 8.06 -2.91 -0.02 3.33 15 Total: -1.00 -66.34 261.51 5.61 -60.73 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 1.11 Total: 5.38 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: 4.41 Total: -6.31 kcal Atomic # 7 Polarization: -72.12 SS G_CDS: -2.22 Total: -74.34 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: 0.43 Total: -27.34 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 1.88 Total: 41.88 kcal Total: -66.34 5.61 -60.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082592151.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.529 kcal (2) G-P(sol) polarization free energy of solvation -66.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds