Wall clock time and date at job start Mon Mar 30 2020 02:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00479 * 2 1 4 4 H 1.48498 * 109.46997 * 270.00506 * 3 2 1 5 5 H 1.48507 * 109.46651 * 30.00060 * 3 2 1 6 6 H 1.48490 * 109.47102 * 150.00065 * 3 2 1 7 7 C 1.37886 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99902 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00056 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46989 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.46984 * 180.02562 * 10 9 7 12 12 C 1.38399 * 119.84516 * 89.99643 * 11 10 9 13 13 C 1.38135 * 120.18778 * 179.97438 * 12 11 10 14 14 C 1.38612 * 119.82295 * 0.02562 * 13 12 11 15 15 N 1.39457 * 133.36692 * 180.02562 * 14 13 12 16 16 H 0.97003 * 126.24936 * 359.95347 * 15 14 13 17 17 C 1.34775 * 107.49412 * 179.97438 * 15 14 13 18 18 O 1.21604 * 125.27597 * 179.97438 * 17 15 14 19 19 O 1.34232 * 109.45018 * 359.97438 * 17 15 14 20 20 C 1.35559 * 109.17655 * 0.02562 * 19 17 15 21 21 C 1.38123 * 119.83791 * 269.97771 * 11 10 9 22 22 H 0.97002 * 119.99209 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47054 * 59.99831 * 9 7 2 24 24 H 1.08997 * 109.47424 * 300.00181 * 9 7 2 25 25 H 1.09000 * 109.46815 * 60.00244 * 10 9 7 26 26 H 1.09001 * 109.46698 * 299.99952 * 10 9 7 27 27 H 1.08001 * 119.91225 * 359.97438 * 12 11 10 28 28 H 1.07999 * 120.09225 * 179.72510 * 13 12 11 29 29 H 1.08002 * 120.04631 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 6 5.5285 -2.6368 -0.0009 12 6 6.2172 -2.6367 1.1995 13 6 7.5985 -2.6373 1.2078 14 6 8.2951 -2.6375 0.0094 15 7 9.6528 -2.6385 -0.3090 16 1 10.3899 -2.6386 0.3217 17 6 9.7537 -2.6387 -1.6530 18 8 10.7963 -2.6391 -2.2789 19 8 8.5250 -2.6385 -2.1935 20 6 7.6019 -2.6375 -1.2008 21 6 6.2158 -2.6374 -1.1990 22 1 -0.4849 0.8401 -0.0004 23 1 3.8752 -0.6805 0.8889 24 1 3.8746 -0.6802 -0.8911 25 1 3.6577 -3.1507 -0.8908 26 1 3.6584 -3.1503 0.8893 27 1 5.6732 -2.6361 2.1325 28 1 8.1344 -2.6327 2.1455 29 1 5.6739 -2.6382 -2.1333 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082592157.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:53 Heat of formation + Delta-G solvation = -33.024421 kcal Electronic energy + Delta-G solvation = -15300.064770 eV Core-core repulsion = 12574.938718 eV Total energy + Delta-G solvation = -2725.126052 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.29770 -38.87600 -37.54048 -35.67829 -33.70070 -31.85275 -30.59414 -28.75707 -25.22547 -23.66286 -23.34037 -22.13486 -20.45972 -18.34913 -18.19118 -17.40504 -16.85503 -16.31418 -15.55984 -14.90074 -14.34098 -14.09669 -13.75346 -13.47093 -12.96380 -12.89868 -12.69412 -12.22808 -11.76412 -11.43053 -11.18996 -11.00650 -10.85536 -10.13690 -9.98330 -9.78712 -9.27967 -8.84300 -8.59699 -8.09141 -6.10482 -4.09642 1.04954 1.13566 2.16892 2.34944 2.83382 3.27467 3.35491 3.38109 3.55105 4.26443 4.39972 4.79590 4.93983 5.05526 5.23480 5.25418 5.33160 5.77335 5.80347 6.03992 6.19676 6.30374 6.34010 6.45635 6.63823 6.74103 7.07910 7.17354 7.30886 7.56468 7.70453 8.45191 8.93791 9.51514 11.02644 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.042006 B = 0.005430 C = 0.005258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.407950 B = 5155.189371 C = 5323.740845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.074 0.926 9 C -0.007 4.007 10 C -0.070 4.070 11 C -0.045 4.045 12 C -0.097 4.097 13 C -0.098 4.098 14 C 0.045 3.955 15 N -0.648 5.648 16 H 0.440 0.560 17 C 0.637 3.363 18 O -0.499 6.499 19 O -0.237 6.237 20 C 0.036 3.964 21 C -0.081 4.081 22 H 0.264 0.736 23 H 0.019 0.981 24 H 0.014 0.986 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.142 0.858 28 H 0.133 0.867 29 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.689 -5.460 3.148 16.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.562 4.562 8 H 0.092 0.908 9 C -0.045 4.045 10 C -0.107 4.107 11 C -0.046 4.046 12 C -0.116 4.116 13 C -0.119 4.119 14 C -0.053 4.053 15 N -0.305 5.305 16 H 0.283 0.717 17 C 0.391 3.609 18 O -0.384 6.384 19 O -0.142 6.142 20 C -0.010 4.010 21 C -0.100 4.100 22 H 0.073 0.927 23 H 0.037 0.963 24 H 0.033 0.967 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.159 0.841 28 H 0.151 0.849 29 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 16.003 -5.342 2.413 17.043 hybrid contribution 0.877 1.008 0.318 1.373 sum 16.880 -4.334 2.732 17.641 Atomic orbital electron populations 1.69910 1.06305 1.26981 1.50796 1.25014 0.94712 0.99159 0.94451 0.86810 0.80362 0.83682 0.78645 1.20228 1.21364 1.18952 1.21107 0.89221 0.94590 1.51290 0.90811 1.19584 0.97138 0.90993 0.96769 1.20697 0.86195 1.00878 1.02961 1.20240 0.98114 0.95203 0.91030 1.21045 0.92353 0.99258 0.98917 1.20067 0.93910 1.03356 0.94559 1.18427 0.82957 1.07982 0.95919 1.43515 1.07320 1.71622 1.08027 0.71744 1.18531 0.83128 0.78161 0.81069 1.91170 1.25033 1.56472 1.65678 1.84979 1.15187 1.80231 1.33807 1.19020 0.91164 1.07462 0.83372 1.20039 0.87571 1.02154 1.00223 0.92651 0.96285 0.96746 0.90998 0.90789 0.84055 0.84910 0.83949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.97 13.96 55.43 0.77 -26.20 15 2 C 0.07 1.91 5.47 -17.82 -0.10 1.82 15 3 Si 0.88 21.02 27.47 -169.99 -4.67 16.35 15 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 6 H -0.26 -6.06 6.54 56.52 0.37 -5.69 15 7 C -0.52 -14.08 9.66 -34.44 -0.33 -14.41 15 8 H 0.07 2.12 7.99 -52.49 -0.42 1.70 15 9 C -0.01 -0.16 4.02 -27.88 -0.11 -0.28 15 10 C -0.07 -1.19 5.27 -27.88 -0.15 -1.34 15 11 C -0.04 -0.64 5.13 -104.60 -0.54 -1.18 15 12 C -0.10 -1.18 9.69 -39.56 -0.38 -1.56 15 13 C -0.10 -1.03 10.07 -39.48 -0.40 -1.43 15 14 C 0.05 0.54 7.25 -83.79 -0.61 -0.07 15 15 N -0.65 -6.99 6.22 -14.39 -0.09 -7.08 15 16 H 0.44 3.19 8.96 -40.82 -0.37 2.82 15 17 C 0.64 9.08 9.44 54.05 0.51 9.59 15 18 O -0.50 -8.33 18.05 -19.01 -0.34 -8.67 15 19 O -0.24 -3.57 10.72 -21.99 -0.24 -3.80 15 20 C 0.04 0.50 7.35 -38.98 -0.29 0.22 15 21 C -0.08 -1.14 9.71 -39.48 -0.38 -1.53 15 22 H 0.26 7.40 8.31 -40.82 -0.34 7.07 15 23 H 0.02 0.41 7.20 -51.93 -0.37 0.04 15 24 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 15 25 H 0.07 1.21 8.08 -51.93 -0.42 0.79 15 26 H 0.07 1.21 8.08 -51.93 -0.42 0.79 15 27 H 0.14 1.49 8.06 -52.49 -0.42 1.07 15 28 H 0.13 0.98 8.06 -52.49 -0.42 0.55 15 29 H 0.14 1.89 8.06 -52.49 -0.42 1.46 15 LS Contribution 260.62 15.07 3.93 3.93 Total: -1.00 -31.51 260.62 -6.24 -37.75 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: -2.83 Total: -2.11 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -2.77 Total: -10.17 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: 0.68 Total: -33.28 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -0.58 Total: -12.47 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -31.51 -6.24 -37.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082592157.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.723 kcal (2) G-P(sol) polarization free energy of solvation -31.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds