Wall clock time and date at job start Mon Mar 30 2020 02:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00479 * 2 1 4 4 H 1.48498 * 109.46997 * 270.00506 * 3 2 1 5 5 H 1.48507 * 109.46651 * 30.00060 * 3 2 1 6 6 H 1.48490 * 109.47102 * 150.00065 * 3 2 1 7 7 C 1.37886 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99902 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00056 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46989 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.46984 * 180.02562 * 10 9 7 12 12 C 1.38399 * 119.84516 * 89.99643 * 11 10 9 13 13 C 1.38135 * 120.18778 * 179.97438 * 12 11 10 14 14 C 1.38612 * 119.82295 * 0.02562 * 13 12 11 15 15 N 1.39457 * 133.36692 * 180.02562 * 14 13 12 16 16 H 0.97003 * 126.24936 * 359.95347 * 15 14 13 17 17 C 1.34775 * 107.49412 * 179.97438 * 15 14 13 18 18 O 1.21604 * 125.27597 * 179.97438 * 17 15 14 19 19 O 1.34232 * 109.45018 * 359.97438 * 17 15 14 20 20 C 1.35559 * 109.17655 * 0.02562 * 19 17 15 21 21 C 1.38123 * 119.83791 * 269.97771 * 11 10 9 22 22 H 0.97002 * 119.99209 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47054 * 59.99831 * 9 7 2 24 24 H 1.08997 * 109.47424 * 300.00181 * 9 7 2 25 25 H 1.09000 * 109.46815 * 60.00244 * 10 9 7 26 26 H 1.09001 * 109.46698 * 299.99952 * 10 9 7 27 27 H 1.08001 * 119.91225 * 359.97438 * 12 11 10 28 28 H 1.07999 * 120.09225 * 179.72510 * 13 12 11 29 29 H 1.08002 * 120.04631 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 6 5.5285 -2.6368 -0.0009 12 6 6.2172 -2.6367 1.1995 13 6 7.5985 -2.6373 1.2078 14 6 8.2951 -2.6375 0.0094 15 7 9.6528 -2.6385 -0.3090 16 1 10.3899 -2.6386 0.3217 17 6 9.7537 -2.6387 -1.6530 18 8 10.7963 -2.6391 -2.2789 19 8 8.5250 -2.6385 -2.1935 20 6 7.6019 -2.6375 -1.2008 21 6 6.2158 -2.6374 -1.1990 22 1 -0.4849 0.8401 -0.0004 23 1 3.8752 -0.6805 0.8889 24 1 3.8746 -0.6802 -0.8911 25 1 3.6577 -3.1507 -0.8908 26 1 3.6584 -3.1503 0.8893 27 1 5.6732 -2.6361 2.1325 28 1 8.1344 -2.6327 2.1455 29 1 5.6739 -2.6382 -2.1333 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082592157.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:53 Heat of formation + Delta-G solvation = -54.137669 kcal Electronic energy + Delta-G solvation = -15300.980309 eV Core-core repulsion = 12574.938718 eV Total energy + Delta-G solvation = -2726.041592 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.34090 -39.95083 -38.68033 -36.77057 -35.40647 -33.55406 -31.62020 -30.17799 -26.77966 -24.71771 -24.33045 -23.52579 -21.93851 -19.43399 -19.26500 -18.77141 -18.48166 -17.43222 -16.63179 -16.31805 -15.99895 -15.06664 -14.91040 -14.71502 -14.52557 -14.45591 -13.86639 -13.64986 -13.24147 -12.85805 -12.49268 -12.41481 -12.05591 -11.79435 -11.57037 -11.47906 -11.26258 -10.72228 -9.81714 -9.14892 -8.25175 -6.28541 0.06526 0.12021 1.17610 1.27465 1.39949 1.41012 1.52178 1.84036 2.39418 2.55543 3.11241 3.32313 3.77259 3.91970 4.15828 4.21313 4.32159 4.67830 4.77935 4.84691 4.91348 5.09662 5.20917 5.41475 5.45623 5.48970 5.56364 5.71270 5.77310 6.05847 6.32610 6.59926 6.80756 7.36263 8.91319 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.042006 B = 0.005430 C = 0.005258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.407950 B = 5155.189371 C = 5323.740845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.004 3.996 3 Si 0.944 3.056 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.242 1.242 7 C -0.528 4.528 8 H 0.038 0.962 9 C -0.005 4.005 10 C -0.060 4.060 11 C -0.059 4.059 12 C -0.092 4.092 13 C -0.079 4.079 14 C 0.054 3.946 15 N -0.622 5.622 16 H 0.458 0.542 17 C 0.634 3.366 18 O -0.530 6.530 19 O -0.253 6.253 20 C 0.012 3.988 21 C -0.089 4.089 22 H 0.265 0.735 23 H 0.027 0.973 24 H 0.014 0.986 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.162 0.838 28 H 0.177 0.823 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.039 -5.003 4.837 19.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.192 4.192 3 Si 0.768 3.232 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.165 1.165 7 C -0.566 4.566 8 H 0.056 0.944 9 C -0.043 4.043 10 C -0.098 4.098 11 C -0.060 4.060 12 C -0.111 4.111 13 C -0.099 4.099 14 C -0.045 4.045 15 N -0.281 5.281 16 H 0.304 0.696 17 C 0.388 3.612 18 O -0.417 6.417 19 O -0.159 6.159 20 C -0.034 4.034 21 C -0.107 4.107 22 H 0.073 0.927 23 H 0.045 0.955 24 H 0.032 0.968 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.180 0.820 28 H 0.194 0.806 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 18.379 -4.902 4.135 19.466 hybrid contribution 0.102 0.765 -0.198 0.797 sum 18.481 -4.137 3.937 19.344 Atomic orbital electron populations 1.70068 1.08292 1.27997 1.52949 1.25967 0.95499 1.03350 0.94398 0.85741 0.79783 0.78688 0.78953 1.19838 1.21304 1.16476 1.21528 0.92128 0.93162 1.49832 0.94362 1.19516 0.93551 0.94360 0.96861 1.20441 0.88487 0.97797 1.03051 1.19942 0.96293 0.97538 0.92209 1.21313 0.93195 0.97918 0.98661 1.20434 0.93215 1.00752 0.95487 1.18611 0.83013 1.07063 0.95767 1.43335 1.07626 1.70090 1.07034 0.69563 1.18591 0.82530 0.78236 0.81876 1.91144 1.25957 1.58050 1.66521 1.84929 1.15772 1.80300 1.34880 1.19143 0.91191 1.08936 0.84090 1.20021 0.87917 1.02496 1.00300 0.92651 0.95474 0.96757 0.91670 0.90210 0.82026 0.80605 0.84288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.39 13.96 21.45 0.30 -58.09 15 2 C 0.00 0.25 5.47 84.66 0.46 0.72 15 3 Si 0.94 42.85 27.47 68.60 1.88 44.73 15 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 15 5 H -0.29 -12.90 7.11 99.48 0.71 -12.20 15 6 H -0.24 -9.95 6.54 99.48 0.65 -9.30 15 7 C -0.53 -28.75 9.66 25.60 0.25 -28.50 15 8 H 0.04 2.28 7.99 -2.91 -0.02 2.26 15 9 C -0.01 -0.23 4.02 29.85 0.12 -0.11 15 10 C -0.06 -2.00 5.27 29.85 0.16 -1.84 15 11 C -0.06 -1.56 5.13 -19.85 -0.10 -1.66 15 12 C -0.09 -1.86 9.69 22.28 0.22 -1.64 15 13 C -0.08 -1.26 10.07 22.33 0.22 -1.03 15 14 C 0.05 1.10 7.25 38.31 0.28 1.38 15 15 N -0.62 -11.50 6.22 -430.02 -2.68 -14.17 15 16 H 0.46 4.91 8.96 -92.71 -0.83 4.08 15 17 C 0.63 17.14 9.44 129.79 1.23 18.37 15 18 O -0.53 -17.27 18.05 19.17 0.35 -16.92 15 19 O -0.25 -7.42 10.72 8.50 0.09 -7.33 15 20 C 0.01 0.32 7.35 22.66 0.17 0.49 15 21 C -0.09 -2.39 9.71 22.33 0.22 -2.17 15 22 H 0.26 15.22 8.31 -92.71 -0.77 14.45 15 23 H 0.03 1.11 7.20 -2.38 -0.02 1.09 15 24 H 0.01 0.60 7.57 -2.39 -0.02 0.58 15 25 H 0.06 2.19 8.08 -2.39 -0.02 2.17 15 26 H 0.08 2.50 8.08 -2.39 -0.02 2.48 15 27 H 0.16 2.63 8.06 -2.91 -0.02 2.61 15 28 H 0.18 1.37 8.06 -2.91 -0.02 1.35 15 29 H 0.14 3.68 8.06 -2.91 -0.02 3.66 15 Total: -1.00 -69.46 260.62 3.45 -66.01 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: 0.30 Total: 1.79 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: 3.21 Total: -16.01 kcal Atomic # 7 Polarization: -69.89 SS G_CDS: -2.38 Total: -72.27 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: 0.44 Total: -24.25 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.88 Total: 44.73 kcal Total: -69.46 3.45 -66.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082592157.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.869 kcal (2) G-P(sol) polarization free energy of solvation -69.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds