Wall clock time and date at job start Mon Mar 30 2020 03:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.40215 * 120.50650 * 2 1 4 4 C 1.38502 * 120.74617 * 15.19540 * 3 2 1 5 5 C 1.38288 * 119.81536 * 180.02562 * 4 3 2 6 6 C 1.38273 * 120.20087 * 359.97438 * 5 4 3 7 7 C 1.38322 * 120.25841 * 359.97438 * 6 5 4 8 8 C 1.38389 * 119.87161 * 0.02929 * 7 6 5 9 9 O 1.35979 * 120.66295 * 180.02562 * 8 7 6 10 10 C 1.43003 * 116.71547 * 147.12136 * 9 8 7 11 11 H 1.09000 * 109.44001 * 286.35139 * 10 9 8 12 12 C 1.50700 * 109.44697 * 166.45197 * 10 9 8 13 13 H 1.07997 * 119.99726 * 239.99828 * 12 10 9 14 14 C 1.37876 * 120.00101 * 59.99441 * 12 10 9 15 15 N 1.31508 * 119.99902 * 179.97438 * 14 12 10 16 16 Si 1.86796 * 120.00121 * 0.02562 * 14 12 10 17 17 H 1.48495 * 109.47484 * 89.99923 * 16 14 12 18 18 H 1.48495 * 109.47221 * 209.99939 * 16 14 12 19 19 H 1.48504 * 109.47098 * 329.99479 * 16 14 12 20 20 C 1.35083 * 120.50749 * 179.72150 * 2 1 3 21 21 O 1.21291 * 120.13862 * 1.97211 * 20 2 1 22 22 H 1.09008 * 109.46939 * 90.00065 * 1 2 3 23 23 H 1.08998 * 109.47162 * 209.99772 * 1 2 3 24 24 H 1.09000 * 109.47050 * 330.00212 * 1 2 3 25 25 H 1.08004 * 120.09285 * 0.02562 * 4 3 2 26 26 H 1.08004 * 119.90034 * 180.02562 * 5 4 3 27 27 H 1.08000 * 119.87537 * 180.02562 * 6 5 4 28 28 H 1.07997 * 120.06277 * 180.02562 * 7 6 5 29 29 H 0.96997 * 120.00175 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1768 1.2081 0.0000 4 6 1.5466 2.4012 0.3120 5 6 2.2670 3.5816 0.3056 6 6 3.6131 3.5732 -0.0106 7 6 4.2485 2.3847 -0.3220 8 6 3.5341 1.1994 -0.3178 9 8 4.1426 0.0218 -0.6209 10 6 3.6580 -1.1439 0.0508 11 1 3.9905 -1.1291 1.0887 12 6 4.1964 -2.3757 -0.6303 13 1 3.5160 -3.0989 -1.0548 14 6 5.5576 -2.5793 -0.7114 15 7 6.0274 -3.6544 -1.3053 16 14 6.7345 -1.3286 0.0235 17 1 7.0161 -1.6850 1.4373 18 1 8.0027 -1.3287 -0.7490 19 1 6.1203 0.0223 -0.0336 20 6 2.1508 -1.1638 0.0057 21 8 1.5568 -2.2208 -0.0253 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 0.4953 2.4098 0.5596 26 1 1.7770 4.5128 0.5491 27 1 4.1708 4.4980 -0.0136 28 1 5.3001 2.3817 -0.5681 29 1 6.9850 -3.7979 -1.3620 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084770279.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:43 Heat of formation + Delta-G solvation = -26.642722 kcal Electronic energy + Delta-G solvation = -16390.449318 eV Core-core repulsion = 13665.599996 eV Total energy + Delta-G solvation = -2724.849321 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.79581 -38.22495 -36.88193 -35.10322 -32.85838 -30.31052 -29.51249 -28.88576 -26.72005 -23.23741 -22.66590 -21.88525 -18.88836 -18.44733 -17.29567 -16.54741 -15.85424 -15.12964 -15.01793 -14.60873 -14.15952 -14.05606 -13.78691 -13.38206 -12.75908 -12.37057 -12.30579 -12.00780 -11.72336 -11.44540 -11.01531 -10.93920 -10.50814 -10.03085 -9.96638 -9.45161 -9.01408 -8.77769 -8.24667 -7.27964 -6.34206 -4.46569 1.49013 1.64177 3.03691 3.12436 3.26369 3.32470 3.48308 4.01290 4.24562 4.31584 4.73098 5.06081 5.17292 5.19413 5.31906 5.46891 5.59427 5.66084 5.83965 5.87622 6.01557 6.25784 6.38286 6.44303 6.71098 6.85099 6.98906 7.08516 7.56614 8.14718 8.24155 8.53666 8.77473 9.22241 10.74027 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.026309 B = 0.011812 C = 0.008401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.029157 B = 2369.887780 C = 3332.052858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.568 5.568 3 C 0.092 3.908 4 C -0.134 4.134 5 C -0.134 4.134 6 C -0.117 4.117 7 C -0.129 4.129 8 C 0.095 3.905 9 O -0.305 6.305 10 C 0.177 3.823 11 H 0.060 0.940 12 C -0.509 4.509 13 H 0.100 0.900 14 C 0.091 3.909 15 N -0.867 5.867 16 Si 0.869 3.131 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.224 1.224 20 C 0.502 3.498 21 O -0.502 6.502 22 H 0.059 0.941 23 H 0.080 0.920 24 H 0.072 0.928 25 H 0.125 0.875 26 H 0.121 0.879 27 H 0.123 0.877 28 H 0.131 0.869 29 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.951 14.383 4.088 16.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.295 5.295 3 C -0.003 4.003 4 C -0.154 4.154 5 C -0.152 4.152 6 C -0.136 4.136 7 C -0.148 4.148 8 C 0.047 3.953 9 O -0.221 6.221 10 C 0.121 3.879 11 H 0.078 0.922 12 C -0.545 4.545 13 H 0.118 0.882 14 C -0.117 4.117 15 N -0.502 5.502 16 Si 0.694 3.306 17 H -0.205 1.205 18 H -0.209 1.209 19 H -0.147 1.147 20 C 0.291 3.709 21 O -0.375 6.375 22 H 0.077 0.923 23 H 0.099 0.901 24 H 0.091 0.909 25 H 0.143 0.857 26 H 0.139 0.861 27 H 0.141 0.859 28 H 0.149 0.851 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.032 13.498 3.876 15.284 hybrid contribution 0.387 0.520 0.354 0.739 sum -5.645 14.018 4.230 15.693 Atomic orbital electron populations 1.21717 0.78916 1.03189 1.02310 1.45844 1.06859 1.04941 1.71857 1.18231 0.91269 0.86667 1.04152 1.20571 1.00098 0.90943 1.03837 1.20746 0.94368 0.97073 1.03053 1.20872 0.94693 0.97160 1.00888 1.20602 1.00116 0.90366 1.03715 1.19125 0.89092 0.89483 0.97628 1.87068 1.57954 1.12681 1.64358 1.20797 0.85699 0.85176 0.96237 0.92247 1.20755 0.93479 0.99876 1.40417 0.88249 1.25036 0.98254 0.95077 0.93349 1.69880 1.14492 1.26095 1.39725 0.87034 0.80049 0.84543 0.78951 1.20452 1.20857 1.14721 1.22123 0.92002 0.82323 0.74402 1.90624 1.70744 1.29734 1.46354 0.92282 0.90100 0.90909 0.85721 0.86065 0.85889 0.85100 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 10.23 59.85 0.61 1.80 15 2 N -0.57 -11.02 3.12 -120.56 -0.38 -11.39 15 3 C 0.09 1.66 6.39 -83.49 -0.53 1.13 15 4 C -0.13 -1.89 9.36 -39.47 -0.37 -2.26 15 5 C -0.13 -1.67 10.04 -39.55 -0.40 -2.06 15 6 C -0.12 -1.54 10.04 -39.54 -0.40 -1.94 15 7 C -0.13 -2.13 10.00 -39.49 -0.39 -2.52 15 8 C 0.10 1.89 6.44 -39.09 -0.25 1.64 15 9 O -0.31 -7.24 6.89 -19.67 -0.14 -7.38 15 10 C 0.18 4.42 2.41 -28.99 -0.07 4.35 15 11 H 0.06 1.43 7.56 -51.93 -0.39 1.04 15 12 C -0.51 -14.75 9.14 -34.44 -0.31 -15.06 15 13 H 0.10 3.20 7.36 -52.49 -0.39 2.81 15 14 C 0.09 2.59 5.47 -17.82 -0.10 2.49 15 15 N -0.87 -25.85 13.96 55.43 0.77 -25.08 15 16 Si 0.87 20.66 26.99 -169.99 -4.59 16.07 15 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 19 H -0.22 -5.06 5.31 56.52 0.30 -4.76 15 20 C 0.50 11.87 7.37 -10.80 -0.08 11.79 15 21 O -0.50 -13.03 15.59 5.55 0.09 -12.94 15 22 H 0.06 0.83 8.14 -51.92 -0.42 0.40 15 23 H 0.08 1.22 7.49 -51.93 -0.39 0.83 15 24 H 0.07 0.82 5.96 -51.93 -0.31 0.51 15 25 H 0.13 1.43 6.12 -52.48 -0.32 1.11 15 26 H 0.12 1.13 8.06 -52.48 -0.42 0.71 15 27 H 0.12 1.24 8.06 -52.49 -0.42 0.82 15 28 H 0.13 2.05 8.06 -52.49 -0.42 1.63 15 29 H 0.27 7.49 8.31 -40.82 -0.34 7.15 15 LS Contribution 248.06 15.07 3.74 3.74 Total: -1.00 -32.20 248.06 -5.52 -37.72 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -2.73 Total: -0.09 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -2.29 Total: -0.65 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.40 Total: -36.47 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.05 Total: -20.32 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.59 Total: 16.07 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -32.20 -5.52 -37.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084770279.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.081 kcal (2) G-P(sol) polarization free energy of solvation -32.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds