Wall clock time and date at job start Mon Mar 30 2020 03:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.40215 * 120.50650 * 2 1 4 4 C 1.38502 * 120.74617 * 15.19540 * 3 2 1 5 5 C 1.38288 * 119.81536 * 180.02562 * 4 3 2 6 6 C 1.38273 * 120.20087 * 359.97438 * 5 4 3 7 7 C 1.38322 * 120.25841 * 359.97438 * 6 5 4 8 8 C 1.38389 * 119.87161 * 0.02929 * 7 6 5 9 9 O 1.35979 * 120.66295 * 180.02562 * 8 7 6 10 10 C 1.43003 * 116.71547 * 147.12136 * 9 8 7 11 11 H 1.09000 * 109.44001 * 286.35139 * 10 9 8 12 12 C 1.50700 * 109.44697 * 166.45197 * 10 9 8 13 13 H 1.07997 * 119.99726 * 239.99828 * 12 10 9 14 14 C 1.37876 * 120.00101 * 59.99441 * 12 10 9 15 15 N 1.31508 * 119.99902 * 179.97438 * 14 12 10 16 16 Si 1.86796 * 120.00121 * 0.02562 * 14 12 10 17 17 H 1.48495 * 109.47484 * 89.99923 * 16 14 12 18 18 H 1.48495 * 109.47221 * 209.99939 * 16 14 12 19 19 H 1.48504 * 109.47098 * 329.99479 * 16 14 12 20 20 C 1.35083 * 120.50749 * 179.72150 * 2 1 3 21 21 O 1.21291 * 120.13862 * 1.97211 * 20 2 1 22 22 H 1.09008 * 109.46939 * 90.00065 * 1 2 3 23 23 H 1.08998 * 109.47162 * 209.99772 * 1 2 3 24 24 H 1.09000 * 109.47050 * 330.00212 * 1 2 3 25 25 H 1.08004 * 120.09285 * 0.02562 * 4 3 2 26 26 H 1.08004 * 119.90034 * 180.02562 * 5 4 3 27 27 H 1.08000 * 119.87537 * 180.02562 * 6 5 4 28 28 H 1.07997 * 120.06277 * 180.02562 * 7 6 5 29 29 H 0.96997 * 120.00175 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1768 1.2081 0.0000 4 6 1.5466 2.4012 0.3120 5 6 2.2670 3.5816 0.3056 6 6 3.6131 3.5732 -0.0106 7 6 4.2485 2.3847 -0.3220 8 6 3.5341 1.1994 -0.3178 9 8 4.1426 0.0218 -0.6209 10 6 3.6580 -1.1439 0.0508 11 1 3.9905 -1.1291 1.0887 12 6 4.1964 -2.3757 -0.6303 13 1 3.5160 -3.0989 -1.0548 14 6 5.5576 -2.5793 -0.7114 15 7 6.0274 -3.6544 -1.3053 16 14 6.7345 -1.3286 0.0235 17 1 7.0161 -1.6850 1.4373 18 1 8.0027 -1.3287 -0.7490 19 1 6.1203 0.0223 -0.0336 20 6 2.1508 -1.1638 0.0057 21 8 1.5568 -2.2208 -0.0253 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 0.4953 2.4098 0.5596 26 1 1.7770 4.5128 0.5491 27 1 4.1708 4.4980 -0.0136 28 1 5.3001 2.3817 -0.5681 29 1 6.9850 -3.7979 -1.3620 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084770279.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:43 Heat of formation + Delta-G solvation = -49.636795 kcal Electronic energy + Delta-G solvation = -16391.446415 eV Core-core repulsion = 13665.599996 eV Total energy + Delta-G solvation = -2725.846419 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.34119 -39.78717 -38.45265 -36.59173 -34.97041 -31.80475 -30.94861 -30.32628 -28.28023 -25.03709 -24.16898 -23.11940 -20.40905 -20.09446 -19.19635 -18.09406 -17.52578 -16.73105 -16.59762 -16.14512 -15.69197 -15.36421 -15.18634 -15.05880 -14.50987 -13.94952 -13.89252 -13.23575 -13.05937 -13.00510 -12.75253 -12.51583 -12.15227 -11.85086 -11.44572 -11.31138 -10.94156 -10.65884 -9.51343 -8.69965 -8.51029 -6.71991 0.21336 0.42550 1.30143 1.34571 1.44292 1.61472 1.66592 2.31662 2.47243 2.85114 3.14938 3.25444 3.80237 4.12360 4.17792 4.27680 4.33877 4.49032 4.51803 4.58582 4.73390 4.86603 5.00751 5.12317 5.37582 5.56067 5.60764 5.87154 5.93028 6.06258 6.42917 6.64940 6.81769 7.03793 8.62338 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.026309 B = 0.011812 C = 0.008401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.029157 B = 2369.887780 C = 3332.052858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.562 5.562 3 C 0.062 3.938 4 C -0.121 4.121 5 C -0.113 4.113 6 C -0.102 4.102 7 C -0.134 4.134 8 C 0.043 3.957 9 O -0.326 6.326 10 C 0.184 3.816 11 H 0.064 0.936 12 C -0.534 4.534 13 H 0.044 0.956 14 C 0.037 3.963 15 N -0.918 5.918 16 Si 0.942 3.058 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.206 1.206 20 C 0.493 3.507 21 O -0.545 6.545 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.119 0.881 25 H 0.159 0.841 26 H 0.170 0.830 27 H 0.165 0.835 28 H 0.134 0.866 29 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.586 19.647 5.461 21.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.288 5.288 3 C -0.031 4.031 4 C -0.141 4.141 5 C -0.131 4.131 6 C -0.121 4.121 7 C -0.154 4.154 8 C -0.004 4.004 9 O -0.242 6.242 10 C 0.127 3.873 11 H 0.081 0.919 12 C -0.570 4.570 13 H 0.062 0.938 14 C -0.166 4.166 15 N -0.555 5.555 16 Si 0.762 3.238 17 H -0.193 1.193 18 H -0.201 1.201 19 H -0.129 1.129 20 C 0.282 3.718 21 O -0.422 6.422 22 H 0.084 0.916 23 H 0.090 0.910 24 H 0.137 0.863 25 H 0.176 0.824 26 H 0.188 0.812 27 H 0.182 0.818 28 H 0.152 0.848 29 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.696 18.834 5.248 20.666 hybrid contribution 0.436 -0.859 -0.091 0.968 sum -6.260 17.974 5.157 19.720 Atomic orbital electron populations 1.22034 0.76099 1.05027 1.03394 1.45771 1.08548 1.04181 1.70306 1.18553 0.90973 0.87287 1.06321 1.21029 1.01732 0.89633 1.01688 1.21370 0.93935 0.98124 0.99661 1.21383 0.95389 0.97132 0.98148 1.20861 1.00528 0.90381 1.03586 1.19593 0.90604 0.88760 1.01449 1.86832 1.58467 1.13650 1.65225 1.20308 0.86933 0.84503 0.95519 0.91880 1.20711 0.93367 1.01724 1.41199 0.93783 1.26024 0.99907 0.97203 0.93435 1.70006 1.15249 1.28433 1.41807 0.85925 0.77210 0.82297 0.78321 1.19264 1.20144 1.12871 1.21902 0.91863 0.83296 0.74731 1.90585 1.71264 1.31460 1.48878 0.91573 0.91013 0.86305 0.82377 0.81229 0.81774 0.84834 0.91234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.06 10.23 127.77 1.31 3.37 15 2 N -0.56 -21.46 3.12 -653.54 -2.04 -23.50 15 3 C 0.06 2.11 6.39 38.14 0.24 2.35 15 4 C -0.12 -2.73 9.36 22.34 0.21 -2.52 15 5 C -0.11 -1.99 10.04 22.29 0.22 -1.76 15 6 C -0.10 -2.05 10.04 22.30 0.22 -1.83 15 7 C -0.13 -3.99 10.00 22.33 0.22 -3.77 15 8 C 0.04 1.63 6.44 22.59 0.15 1.78 15 9 O -0.33 -15.66 6.89 -93.31 -0.64 -16.31 15 10 C 0.18 9.62 2.41 29.13 0.07 9.69 15 11 H 0.06 3.16 7.56 -2.39 -0.02 3.15 15 12 C -0.53 -33.20 9.14 25.60 0.23 -32.97 15 13 H 0.04 3.13 7.36 -2.91 -0.02 3.11 15 14 C 0.04 2.22 5.47 84.66 0.46 2.69 15 15 N -0.92 -57.97 13.96 21.45 0.30 -57.67 15 16 Si 0.94 43.92 26.99 68.60 1.85 45.77 15 17 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15 18 H -0.28 -12.42 7.11 99.48 0.71 -11.72 15 19 H -0.21 -8.95 5.31 99.48 0.53 -8.42 15 20 C 0.49 24.35 7.37 87.64 0.65 24.99 15 21 O -0.55 -30.25 15.59 -3.06 -0.05 -30.30 15 22 H 0.07 1.74 8.14 -2.38 -0.02 1.72 15 23 H 0.07 2.13 7.49 -2.39 -0.02 2.11 15 24 H 0.12 2.12 5.96 -2.39 -0.01 2.11 15 25 H 0.16 2.49 6.12 -2.91 -0.02 2.47 15 26 H 0.17 1.54 8.06 -2.91 -0.02 1.52 15 27 H 0.16 2.04 8.06 -2.91 -0.02 2.02 15 28 H 0.13 3.80 8.06 -2.91 -0.02 3.77 15 29 H 0.28 16.04 8.31 -92.71 -0.77 15.27 15 Total: -1.00 -78.45 248.06 4.40 -74.05 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: 0.99 Total: 5.93 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 3.99 Total: 2.02 kcal Atomic # 7 Polarization: -79.43 SS G_CDS: -1.74 Total: -81.16 kcal Atomic # 8 Polarization: -45.91 SS G_CDS: -0.69 Total: -46.60 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.85 Total: 45.77 kcal Total: -78.45 4.40 -74.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084770279.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.411 kcal (2) G-P(sol) polarization free energy of solvation -78.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds