Wall clock time and date at job start Mon Mar 30 2020 03:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.40215 * 120.50764 * 2 1 4 4 C 1.38506 * 120.74433 * 15.46171 * 3 2 1 5 5 C 1.38288 * 119.81121 * 180.02562 * 4 3 2 6 6 C 1.38272 * 120.20089 * 359.97438 * 5 4 3 7 7 C 1.38314 * 120.26281 * 359.97438 * 6 5 4 8 8 C 1.38399 * 119.86951 * 0.03385 * 7 6 5 9 9 O 1.35984 * 120.65993 * 180.02562 * 8 7 6 10 10 C 1.43001 * 116.70848 * 147.11577 * 9 8 7 11 11 H 1.09004 * 109.44255 * 166.45177 * 10 9 8 12 12 C 1.50702 * 109.44548 * 286.35093 * 10 9 8 13 13 H 1.07992 * 119.99893 * 119.99820 * 12 10 9 14 14 C 1.37875 * 120.00076 * 300.00361 * 12 10 9 15 15 N 1.31521 * 119.99881 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00253 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47045 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47004 * 119.99792 * 16 14 12 19 19 H 1.48497 * 109.47375 * 239.99968 * 16 14 12 20 20 C 1.35084 * 120.51016 * 179.71421 * 2 1 3 21 21 O 1.21303 * 120.13232 * 1.67498 * 20 2 1 22 22 H 1.08999 * 109.46892 * 90.00692 * 1 2 3 23 23 H 1.09000 * 109.46803 * 209.99865 * 1 2 3 24 24 H 1.09000 * 109.47214 * 330.00659 * 1 2 3 25 25 H 1.07998 * 120.09395 * 0.07718 * 4 3 2 26 26 H 1.07999 * 119.89527 * 180.02562 * 5 4 3 27 27 H 1.08011 * 119.87123 * 179.97438 * 6 5 4 28 28 H 1.07999 * 120.06511 * 179.97438 * 7 6 5 29 29 H 0.97006 * 119.99998 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1769 1.2080 0.0000 4 6 1.5478 2.4005 0.3174 5 6 2.2683 3.5808 0.3108 6 6 3.6131 3.5731 -0.0107 7 6 4.2472 2.3854 -0.3275 8 6 3.5327 1.2001 -0.3233 9 8 4.1401 0.0232 -0.6317 10 6 3.6581 -1.1440 0.0393 11 1 4.0455 -2.0338 -0.4570 12 6 4.1235 -1.1270 1.4725 13 1 3.4007 -1.1277 2.2749 14 6 5.4719 -1.1105 1.7593 15 7 6.3521 -1.1101 0.7821 16 14 6.0489 -1.0887 3.5359 17 1 4.8702 -1.0935 4.4392 18 1 6.8801 -2.2904 3.8012 19 1 6.8549 0.1344 3.7796 20 6 2.1509 -1.1638 0.0058 21 8 1.5566 -2.2210 -0.0196 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5137 25 1 0.4978 2.4084 0.5700 26 1 1.7793 4.5114 0.5585 27 1 4.1707 4.4982 -0.0146 28 1 5.2976 2.3831 -0.5786 29 1 7.3009 -1.0988 0.9838 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084770280.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:46 Heat of formation + Delta-G solvation = -37.125448 kcal Electronic energy + Delta-G solvation = -16519.230435 eV Core-core repulsion = 13793.926549 eV Total energy + Delta-G solvation = -2725.303886 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.52519 -37.99920 -36.52128 -34.88814 -32.84085 -29.91204 -29.14504 -28.66710 -26.30590 -23.47826 -22.64738 -21.56288 -18.71963 -18.11925 -17.07993 -16.43676 -15.17119 -15.04476 -14.72349 -14.44072 -14.07406 -13.73453 -13.65139 -13.13837 -12.65252 -12.30848 -11.84164 -11.80353 -11.51031 -11.28760 -11.04885 -10.89241 -10.49793 -10.36547 -9.77331 -9.43372 -8.85246 -8.77368 -7.94457 -7.00285 -6.31133 -4.52543 1.79357 1.98195 3.14547 3.19110 3.25656 3.33713 3.39338 4.20481 4.29290 4.69838 4.97939 5.15577 5.31560 5.45952 5.53353 5.65819 5.74994 5.92550 6.00325 6.11440 6.35197 6.61766 6.68340 6.93297 7.00710 7.14076 7.34214 7.53991 7.63304 7.75978 8.41687 8.62861 8.72102 9.22392 10.72343 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.021915 B = 0.012354 C = 0.009520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.330699 B = 2265.894464 C = 2940.325221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.561 5.561 3 C 0.090 3.910 4 C -0.135 4.135 5 C -0.141 4.141 6 C -0.117 4.117 7 C -0.126 4.126 8 C 0.137 3.863 9 O -0.299 6.299 10 C 0.206 3.794 11 H 0.114 0.886 12 C -0.559 4.559 13 H 0.066 0.934 14 C 0.088 3.912 15 N -0.848 5.848 16 Si 0.904 3.096 17 H -0.270 1.270 18 H -0.277 1.277 19 H -0.277 1.277 20 C 0.502 3.498 21 O -0.538 6.538 22 H 0.056 0.944 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.121 0.879 26 H 0.117 0.883 27 H 0.120 0.880 28 H 0.130 0.870 29 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.978 8.255 -1.044 10.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.286 5.286 3 C -0.004 4.004 4 C -0.156 4.156 5 C -0.160 4.160 6 C -0.136 4.136 7 C -0.145 4.145 8 C 0.088 3.912 9 O -0.212 6.212 10 C 0.150 3.850 11 H 0.131 0.869 12 C -0.596 4.596 13 H 0.084 0.916 14 C -0.122 4.122 15 N -0.482 5.482 16 Si 0.730 3.270 17 H -0.194 1.194 18 H -0.203 1.203 19 H -0.203 1.203 20 C 0.294 3.706 21 O -0.414 6.414 22 H 0.075 0.925 23 H 0.096 0.904 24 H 0.090 0.910 25 H 0.138 0.862 26 H 0.135 0.865 27 H 0.138 0.862 28 H 0.148 0.852 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.001 7.508 -1.263 9.694 hybrid contribution 0.076 0.000 1.165 1.167 sum -5.925 7.509 -0.099 9.565 Atomic orbital electron populations 1.21690 0.79447 1.03170 1.01888 1.45669 1.06497 1.05174 1.71292 1.18170 0.91520 0.86192 1.04522 1.20490 0.99864 0.91140 1.04100 1.20647 0.94469 0.96897 1.04022 1.20815 0.94603 0.97126 1.01092 1.20530 0.99917 0.90429 1.03651 1.18713 0.88192 0.88742 0.95531 1.86476 1.59494 1.12945 1.62306 1.20599 0.82501 0.85690 0.96203 0.86881 1.21156 0.92756 1.55905 0.89788 0.91621 1.25006 0.96234 0.92651 0.98263 1.70033 1.01960 1.44572 1.31650 0.86349 0.78998 0.78083 0.83607 1.19393 1.20301 1.20287 1.22671 0.92832 0.82232 0.72878 1.90592 1.71538 1.30094 1.49192 0.92533 0.90361 0.90971 0.86166 0.86464 0.86247 0.85187 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.29 10.24 59.85 0.61 1.90 15 2 N -0.56 -11.76 3.12 -120.57 -0.38 -12.13 15 3 C 0.09 1.85 6.39 -83.49 -0.53 1.31 15 4 C -0.14 -2.24 9.36 -39.46 -0.37 -2.61 15 5 C -0.14 -2.12 10.04 -39.55 -0.40 -2.52 15 6 C -0.12 -1.86 10.04 -39.54 -0.40 -2.25 15 7 C -0.13 -2.44 10.00 -39.49 -0.39 -2.84 15 8 C 0.14 3.07 6.06 -39.09 -0.24 2.83 15 9 O -0.30 -7.63 9.58 -19.69 -0.19 -7.82 15 10 C 0.21 5.41 3.06 -29.00 -0.09 5.32 15 11 H 0.11 3.09 8.14 -51.93 -0.42 2.67 15 12 C -0.56 -15.40 8.37 -34.44 -0.29 -15.69 15 13 H 0.07 1.85 7.73 -52.49 -0.41 1.44 15 14 C 0.09 2.36 5.40 -17.82 -0.10 2.26 15 15 N -0.85 -23.42 12.84 55.43 0.71 -22.71 15 16 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 15 17 H -0.27 -6.20 7.11 56.52 0.40 -5.80 15 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 19 H -0.28 -6.25 7.11 56.52 0.40 -5.84 15 20 C 0.50 12.29 6.85 -10.81 -0.07 12.22 15 21 O -0.54 -13.87 16.77 5.54 0.09 -13.78 15 22 H 0.06 0.82 8.14 -51.93 -0.42 0.39 15 23 H 0.08 1.29 7.48 -51.93 -0.39 0.90 15 24 H 0.07 0.94 5.96 -51.93 -0.31 0.63 15 25 H 0.12 1.65 6.12 -52.49 -0.32 1.33 15 26 H 0.12 1.37 8.06 -52.49 -0.42 0.94 15 27 H 0.12 1.51 8.06 -52.48 -0.42 1.09 15 28 H 0.13 2.46 8.06 -52.49 -0.42 2.03 15 29 H 0.27 6.93 8.31 -40.82 -0.34 6.59 15 LS Contribution 255.02 15.07 3.84 3.84 Total: -1.00 -30.53 255.02 -5.88 -36.40 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -2.67 Total: 0.54 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -2.26 Total: -0.06 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.34 Total: -34.84 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.10 Total: -21.60 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.53 -5.88 -36.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084770280.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.722 kcal (2) G-P(sol) polarization free energy of solvation -30.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds